LOC103033010 (sta5b,stat5,LOC108444239,LOC106607295,LOC108279147)


Basic Information

Item Value
gene id LOC103033010
gene name sta5b,stat5,LOC108444239,LOC106607295,LOC108279147
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4919473 ~ 5082727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672543.1
GCGTAGCCCCCACTGGTTGACACTAGACGGGAGAggtggagagtgagagagagagagagagagagagagagagagagagagaactggagctgccgctgctgctgctggtggaggtggtggtgtgttatatccggagcttctgctgctgcactTCTGTTTTTATGCGACACGACGGCAGATTTAAACGCCGCGCACGAGaCGCTGGGAAAGGTGCCACGCTCCAGCTAGTTTGAAAAGATTTTGTGGTGCCTCGCTTCAGCATTTCCTGGTCTTGCATGGTAACAAAGGGCTGAAGACTAGAGatggcAGTGTGGATTCAGGCCCAGCAGCTGCAGGGTGATGCCCTGCACCAGATGCAGTCTCTCTATGGCCAACACTTTCCTATAGAGGTGCGACACTACCTGTCCCAGTGGATAGAAGGGCAACTCTGGGATGCGATAGATCTGGAGAACCCGCAGGAGGAGTTTAAAGCTAAGCGTCTATTGGACAGTCTAATTCAGGAACTACAGAAAAAGGCGGAGCATCAAGTGGGAGAAGACGGTTTCCTCCTTAAGATTAAACTAGGCCACTACGCTTCACAGTTaaagAGCACGTATGACCGCTGTCCGCTGGAGCTGGTGAGATGCATCAAACATATTCTCTACACAGAGCAGAGACTCGTCAGAGAAGCCAATAATTCGAGCTCACCGCTGGGTGGGATGATAGACAGCATGTCTCAGAAATATCAGCAGATCAACCAGGCCTTCGAGGAGCTGCGGATCCTGACACAGGACACGGAGAACGACCTGCGCAAACTACAGCACAACCAGGAGTACTTCATCATACAGTACCAGGAGAGTCTACGAATACAggCTCAGCTGAGCAGCCTGGCCACGTTGCCCCCCGCTGACAGACAGCTGAGAGAGCCCAGCCTCCTCAGTAAGAGAGCTACTGTAGAGGCCTGGCTTACCAGAGAGGCTAACACCCTACAGAAATACAGACTGGGACTGGCAGAGAAGCATCAAAAGACACTGGCCTTGTTGCGGAAACAGCAGACGGTGATTTTGGATGACGAGCTAATTCAGTGGAAGAGGCGTCAGCAACTGGCTGGTAACGGAGGACCACCAGAGGGGGGACTAGACATTCTTCAGTCATGgtgtgAGAAACTGGCAGAGACCATTTGGCAGAACAGACAGCAGATCAGAAGGGCGGAGCATTTAAGGCAGCAGCTGCCCATTCCCGGCCCCATAGAGGAGCTGCTCAATGACCTCAACAGCACCATCACTGACATCATCTCAGCCCTCGTaaccagCACCTTCATCATAGAGAAGCAGCCTCCTCAGGTGTTGAAGACCCAGACGAAGTTTGCAGCTACAGTCCGTCTGCTGGTGGGGGGCAAACTCAACGTCCACATGAACCCCCCTCAGGTCAAAGCTACCATCATCAGCGAACAGCAGGCCAAAGCCTTGCTCAAGAATGAAAACACCAGAAATGACAGCAGCGGAGAGATCCTGAATAATAACTGTGTGATGGAGTACCACCAAACCACAGGCACTCTGAGTGCACACTTTAGGAATatgTCTCTGAAGAGGATCAAGCGTTCGGACCGCAGAGGGGCGGAGTCTGTTACAGAGGAGAAGTTCACCATCTTGTTTGAGTCGCAGTTTAGTGTTGGAGGCAACGAGCTAGTTTTTCAGGTCAAGacgCTATCCTTGCCTGTTGTAGTGATTGTCCATGGAAGTCAAGACAACAATGCCACAGCCACAGTTCTGTGGGACAATGCTTTCGCAGAGCCGggCCGGGTACCTTTCATAGTGCCGGACAAGGTGCTGTGGCCACAGTTGTGTGATGCTCTCAACATGAAGTACAGGGCGGAGGTGCAGTCCAACAGAGGCCTCTCTGAGGAGAACCTGGTGTTCCTCGCCCAGAAAGCTTTCAGCAGCTCCAGCTGCAACCCGGAGGATTACCGCAGTATGACCATGACCTGGTCCCAGTTCAACAGGGAAAGTCTGCCGGGCAGGAACTTCACGTTCTGGCAGTGGTTTGACGGCGTCATGGAGCTCACTAAAAAACATCTGAAGCCTCACTGGAACGATGGGGCCATTCTGGGCTTTGTGAATAAGCAGCAAGCTCAGGACATGCTGATGTCCAAACCTAACGGCACGTTCCTGCTGCGGTTCAGTGATTCAGAGATAGGAGGCATCACCATCGCCTGGGTGGCAGAAAACCCCAACAAAACAGggGAGAGAATGGTGTGGAACCTCATGCCCTACACAACCAAAGACTTCTCTATTCGCTCTCTGGCTGACCGCATCAGTGACCTGAACCACCTGCTGTTCCTGTACCCCGATCGACCCAAAGACGAGGTTTTCTCCAAATACTACACCCCTCCACTCTCGAAAGCCGTGGACGGCTACGTCAAACCACAGATCAAACAAGTGGTGCCAGAgtttgCAACGCCTAATCCTGACCCAGCAGCGAACCCCACCTACATGGATCATGCAGCATCGCCGGCCGTCAGTCACCCATCAAACTACGGCATTTATCCTGCAATGTAA
>XM_022672548.1
GCGTAGCCCCCACTGGTTGACACTAGACGGGAGAggtggagagtgagagagagagagagagagagagagagagagagagagaactggagctgccgctgctgctgctggtggaggtggtggtgtgttatatccggagcttctgctgctgcactTCTGTTTTTATGCGACACGACGGCAGATTTAAACGCCGCGCACGAGaCGCTGGGAAAGGTGCCACGCTCCAGCTAGTTTGAAAAGatggcAGTGTGGATTCAGGCCCAGCAGCTGCAGGGTGATGCCCTGCACCAGATGCAGTCTCTCTATGGCCAACACTTTCCTATAGAGGTGCGACACTACCTGTCCCAGTGGATAGAAGGGCAACTCTGGGATGCGATAGATCTGGAGAACCCGCAGGAGGAGTTTAAAGCTAAGCGTCTATTGGACAGTCTAATTCAGGAACTACAGAAAAAGGCGGAGCATCAAGTGGGAGAAGACGGTTTCCTCCTTAAGATTAAACTAGGCCACTACGCTTCACAGTTaaagAGCACGTATGACCGCTGTCCGCTGGAGCTGGTGAGATGCATCAAACATATTCTCTACACAGAGCAGAGACTCGTCAGAGAAGCCAATAATTCGAGCTCACCGCTGGGTGGGATGATAGACAGCATGTCTCAGAAATATCAGCAGATCAACCAGGCCTTCGAGGAGCTGCGGATCCTGACACAGGACACGGAGAACGACCTGCGCAAACTACAGCACAACCAGGAGTACTTCATCATACAGTACCAGGAGAGTCTACGAATACAggCTCAGCTGAGCAGCCTGGCCACGTTGCCCCCCGCTGACAGACAGCTGAGAGAGCCCAGCCTCCTCAGTAAGAGAGCTACTGTAGAGGCCTGGCTTACCAGAGAGGCTAACACCCTACAGAAATACAGACTGGGACTGGCAGAGAAGCATCAAAAGACACTGGCCTTGTTGCGGAAACAGCAGACGGTGATTTTGGATGACGAGCTAATTCAGTGGAAGAGGCGTCAGCAACTGGCTGGTAACGGAGGACCACCAGAGGGGGGACTAGACATTCTTCAGTCATGgtgtgAGAAACTGGCAGAGACCATTTGGCAGAACAGACAGCAGATCAGAAGGGCGGAGCATTTAAGGCAGCAGCTGCCCATTCCCGGCCCCATAGAGGAGCTGCTCAATGACCTCAACAGCACCATCACTGACATCATCTCAGCCCTCGTaaccagCACCTTCATCATAGAGAAGCAGCCTCCTCAGGTGTTGAAGACCCAGACGAAGTTTGCAGCTACAGTCCGTCTGCTGGTGGGGGGCAAACTCAACGTCCACATGAACCCCCCTCAGGTCAAAGCTACCATCATCAGCGAACAGCAGGCCAAAGCCTTGCTCAAGAATGAAAACACCAGAAATGACAGCAGCGGAGAGATCCTGAATAATAACTGTGTGATGGAGTACCACCAAACCACAGGCACTCTGAGTGCACACTTTAGGAATatgTCTCTGAAGAGGATCAAGCGTTCGGACCGCAGAGGGGCGGAGTCTGTTACAGAGGAGAAGTTCACCATCTTGTTTGAGTCGCAGTTTAGTGTTGGAGGCAACGAGCTAGTTTTTCAGGTCAAGacgCTATCCTTGCCTGTTGTAGTGATTGTCCATGGAAGTCAAGACAACAATGCCACAGCCACAGTTCTGTGGGACAATGCTTTCGCAGAGCCGggCCGGGTACCTTTCATAGTGCCGGACAAGGTGCTGTGGCCACAGTTGTGTGATGCTCTCAACATGAAGTACAGGGCGGAGGTGCAGTCCAACAGAGGCCTCTCTGAGGAGAACCTGGTGTTCCTCGCCCAGAAAGCTTTCAGCAGCTCCAGCTGCAACCCGGAGGATTACCGCAGTATGACCATGACCTGGTCCCAGTTCAACAGGGAAAGTCTGCCGGGCAGGAACTTCACGTTCTGGCAGTGGTTTGACGGCGTCATGGAGCTCACTAAAAAACATCTGAAGCCTCACTGGAACGATGGGGCCATTCTGGGCTTTGTGAATAAGCAGCAAGCTCAGGACATGCTGATGTCCAAACCTAACGGCACGTTCCTGCTGCGGTTCAGTGATTCAGAGATAGGAGGCATCACCATCGCCTGGGTGGCAGAAAACCCCAACAAAACAGggGAGAGAATGGTGTGGAACCTCATGCCCTACACAACCAAAGACTTCTCTATTCGCTCTCTGGCTGACCGCATCAGTGACCTGAACCACCTGCTGTTCCTGTACCCCGATCGACCCAAAGACGAGGTTTTCTCCAAATACTACACCCCTCCACTCTCGAAAGCCGTGGACGGCTACGTCAAACCACAGATCAAACAAGTGGTGCCAGAgtttgCAACGCCTAATCCTGACCCAGCAGCGAACCCCACCTACATGGATCATGCAGCATCGCCGGCCGTCAGTCACCCATCAAACTACGGCATTTATCCTGCAATGTAA

Function

NR:

description
PREDICTED: signal transducer and activator of transcription 5B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K11224 STAT5B; signal transducer and activator of transcription 5B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672543.1 True 2537 mRNA 0.53 20 4919473 5082727
XM_022672548.1 False 2472 mRNA 0.53 19 4919473 5082727

Neighbor

gene id symbol gene type direction distance location
stat3 stat3,LOC107653351,LOC107731003,LOC107754129 coding upstream 11312 4854378 ~ 4908161 (+)
cavin1 NA coding upstream 82458 4806334 ~ 4837015 (+)
LOC103021349 LOC103021349,LOC108444243 coding upstream 187149 4705449 ~ 4732324 (+)
LOC103021882 LOC108412577 coding upstream 273347 4639227 ~ 4646126 (+)
LOC103023220 LOC108412582 coding upstream 281235 4635868 ~ 4638238 (+)
kcnh4 kcnh4,LOC107568301 coding downstream 259906 5342633 ~ 5408162 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding downstream 339451 5422178 ~ 5450200 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding downstream 369525 5452252 ~ 5467730 (+)
dhx58 NA coding downstream 392087 5474814 ~ 5500346 (+)
znf385c znf385c,LOC107590592 coding downstream 457214 5539941 ~ 5686852 (+)
G8088 NA non-coding upstream 4563 4914464 ~ 4914910 (+)
G8083 NA non-coding upstream 66407 4852867 ~ 4853066 (+)
G7992 NA non-coding upstream 255108 4664114 ~ 4664365 (+)
G7972 NA non-coding upstream 416909 4501524 ~ 4502564 (+)
G7969 NA non-coding upstream 430275 4487180 ~ 4489198 (+)
G8133 NA non-coding downstream 6901 5089628 ~ 5108793 (+)
G8134 NA non-coding downstream 11234 5093961 ~ 5101259 (+)
G8141 NA non-coding downstream 35321 5118048 ~ 5125168 (+)
G8155 NA non-coding downstream 60273 5143000 ~ 5143355 (+)
G8157 NA non-coding downstream 63643 5146370 ~ 5152507 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 116972 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 990231 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 1466807 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 2077259 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 2361129 2530616 ~ 2558344 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 102807 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 249338 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 646195 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 1274675 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 1626358 6709085 ~ 6734703 (+)

Expression


Co-expression Network