LOC111193176 (LOC108259092,LOC107687002)


Basic Information

Item Value
gene id LOC111193176
gene name LOC108259092,LOC107687002
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 5895157 ~ 5897909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672645.1
AGGCGCATTGGAGAAACGCCGAGAACAGTGTGGAAGACACTGGCTGAGTCCGCTGCTGAATATAAGGCTGGGCTGAAGTGAGGAGCAGCAGAAAGCAGCCAGTTCTACACGAAATAAGAGGAGAGAAGCAGCAGCTCTAACAGCGAGACTTAATCCACACATTCCGGATTATTTCTTCAACTGCGCctgaaaacagacaaaaaagatgTCATCTGCTAAAGGAGTTGCTATCGGCATTGACCTGGGCACGACCTACTCTTGTGTAGGAGTGTTTCAGCATGGAAAAGTGGAGATCATTGCTAATGACCAGGGAAACAGGACCACCCCCAGCTACGTGGCtttcacagacacagagaggctGATTGGAGATGCTGCAAAGAACCAAGTGGCCATGAACCCCAACAACACTGTGTTTGATGCCAAGAGGCTGATCGGCCGCAAGTTTGACGATCCTGTCGTTCAGTCCGATATGAAGCACTGGCCCTTCCAAGTGGTCAGCGATGGAGGAAAGCCAAAGGTTCAAGTTGAGTACAAAGGAGAGCAGAAGACCTTTAACCCTGAAGAGATCTCCTCCATGGTTCTGGTGAAGATGAAGGAAATTGCAGAGGCCTATTTGGGACAGAAGGTGACAAATGCCGTTATTACTGTACCTGCCTACTTCAACGACTCTCAGAGGCAGGCCACCAAAGATGCTGGAGTGATTGCTGGTCTGAACGTCCTGAGGATCATCAATGAACCCACAGCTGCAGCGATCGCTTACGGTTTAGACAAAGGCAAGAAAGGAGAGCGCCACGTCCTGATCTTTGATCTGGGAGGCGGTACCTTCGATGTGTCCATCCTGACAATTGAAGACGGCATCTTTGAGGTGAAAGCCACAGCGGGAGACACTCACCTGGGTGGGGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTAGAAGAATTCAAGAGGAAGCACAAGAAGGATATCAGCCAGAACAAGCGGGCGCTGAGGAGGCTTCGTACAGCCTGTGAGAGAGCCAAGAGAACCCTGTCCTCCAGCTCTCAGGCAAGCATTGAGATCGACTCCCTGCATGAGGGTGTAGATTTCTACACCTCCATCACCAGAGCGAGATTTGAGGAGATGTGCTCAGACCTGTTCAGGGGAACATTGGAGCCAGTGGAGAAAGCCCTGAGAGATGCCAAGATGGACAAATCCCAGATCCATGAAATTGTTCTGGTCGGAGGGTCCACCAGAATCCCCAAGATCCAGAAACTTCTGCAGGATTTCTTCAACGGCCGGGATCTGAACAAAAGCATCAACCCAGATGAGGCGGTGGCTTACGGCGCTGCAGTTCAGGCTGCTATTCTGATGGGTGACACCTCTGGAAATGTTCAAGACCTGCTTCTGCTGGATGTGGCTCCACTGTCCCTGGGCATCGAGACTGCAGGAGGAGTGATGGCTACTCTCATTAAGCGCAACACCACCATCCCCACCAAGCAGACGCAGACCTTCTCCACATACGCAGACAACCAGCCTGGTGTTCTCATCCAAGTGTTTGAAGGTGAGAGAGCCATGACAAAAGACAACAACCTGCTGGGGAAGTTTGACCTGACGGGCATCCCACCTGCACCACGTGGAGTCCCTCAGATTGAGGTGACTTTTGACATCGACGCCAACGGCATTCTGAACGTGTCAGCGGTGGACAAAAGCACCGGCAAACAGAACAAGATCACCATCACCAATGACAAGGGCAGACTGAGCAAAGAGGAGATCGAGAGGATGGTGCAGGAAGCAGACCAATACAAAGCAGAAGACGACCTCCAGAGGGAGAAGATCGCTGCCAAGAACTCTCTGGAGTCGTTCGCCTTTAACATGAAAAACAGTGTGGAAGATGAGAACTTGAAAGGCAAGATCAGTGAAGATGACAAGAAGAAGGTGATTGAGAAGTGCAACCAGGCCATTTCCTGGCTGGAGAACAATCAGCTGGCTGATAAGGAGGAGTTTGAGCATCAGCTGAAGGAACTGGAGAAAGTGTGCAACCCCATCATCACAAAGCTGTACCAGGGAGGGATGCCAGCTGGAGGCTGTGGAGCTCAGGCCCGAGCCAGCTCAGGGGGCAGCGCTCAGGGTCCTACTATTGAAGAAGTTGATTAGaaaattaacttaacttttaagcacattgttttttgttttttgcccaAACCTtataaaattttactttttatatcaACAGGAGGTAGAACATGCCTTGTTCTTTGGTTTACATAAAGCTTGGGGAATCAGTACTGTTTATACATGACATTTTTCAACTTCAAACCAATTAATGactgtgtataatgtgtaaacATTGTgaatactgttttatatttgtgtattatataaaaaataaatgtatttaataagcAAAAAA

Function

NR:

description
PREDICTED: heat shock 70 kDa protein 1

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672645.1 True 2393 mRNA 0.49 2 5895157 5897909

Neighbor

gene id symbol gene type direction distance location
dnajc7 dnajc7,LOC107690290,LOC107687006,LOC107755572 coding upstream 167536 5706208 ~ 5727621 (+)
znf385c znf385c,LOC107590592 coding upstream 208305 5539941 ~ 5686852 (+)
dhx58 NA coding upstream 394811 5474814 ~ 5500346 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding upstream 427427 5452252 ~ 5467730 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding upstream 444957 5422178 ~ 5450200 (+)
nudt9 nudt9,LOC107690277,LOC107755585,LOC107729190,LOC107686995 coding downstream 147003 6044912 ~ 6052499 (+)
LOC103042622 LOC108432050 coding downstream 245183 6143092 ~ 6271142 (+)
LOC111194160 NA coding downstream 381060 6278969 ~ 6279690 (+)
LOC103042304 plcd3,plcd3a,LOC108432051,LOC107654535,LOC107581738,LOC107591554 coding downstream 383428 6281337 ~ 6336335 (+)
LOC103044667 LOC103044667,LOC108432054,LOC108432053 coding downstream 485534 6383443 ~ 6394943 (+)
G8263 nkiras2,kbrs2,LOC106607286 non-coding upstream 190118 5703365 ~ 5705039 (+)
G8250 NA non-coding upstream 252310 5601622 ~ 5642847 (+)
G8181 NA non-coding upstream 482749 5411840 ~ 5412408 (+)
LOC111193166 NA non-coding upstream 561163 5332883 ~ 5333994 (+)
G8157 NA non-coding upstream 742650 5146370 ~ 5152507 (+)
G8291 NA non-coding downstream 7511 5905420 ~ 5905619 (+)
G8292 NA non-coding downstream 12361 5910270 ~ 5910650 (+)
G8304 NA non-coding downstream 53711 5951620 ~ 5958778 (+)
G8309 NA non-coding downstream 66818 5964727 ~ 5966391 (+)
G8320 ehd3,LOC108411040,LOC108260452 non-coding downstream 70266 5968175 ~ 5976450 (+)
G8287 ttc25,LOC106601019 other upstream 165657 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 556068 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 566290 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 1092656 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 1965915 3924285 ~ 3929242 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 459493 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 811176 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 2540877 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 2566207 8464116 ~ 8485936 (+)
G9074 NA other downstream 2697960 8595869 ~ 8596783 (+)

Expression


Co-expression Network