CI01000009_10271506_10292564


Basic Information

Item Value
gene id CI01000009_10271506_10292564
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10270745 ~ 10292564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10271506_10292564.mRNA
GTCATCATTTTTCAGACCTACACAAACAACAGTGCTGTTCCTATTGAAGCAAAGTACGTCTTTCCACTGGAGGAGACGGCAGCAGTGTGTGGATTTGAAGCCTTTATCAATGGAAAACACGTCATTGGAAAGGTAAAGGAAAAAGAACAGGCTCGTAAGGAGTACAAGCAAGCCATAGAGAAAGGCCATGGAGCCTACCTGATGGACCAGGATGCACCGGATGTATTTACTATCAGCGTGGGGAACCTTCCTCCCGGAGCCACAGTTTTGATCAAGGTGACGTTCATCACTGAGCTGGTGGTGAGATCAGGCTCTATAGTCTTCTCATTGGCTGGCAGCGTGGCACCATGGCAACAGAGCGCCGCCCTTAATCAGACGACTCAGGCAACTGTTGAAAAGATTGGTGTGACGGAGCTTCAGTCAGAGGGGGAGTTTTCTCTGTCTATGTCCATTGAAATGCCTTACGAGATCATCAACTTGAGCTCTTCACACCGCATCAAAACCAAGATGACAGACTGTAAGGCAGTGATCAGCACGTTACCGGGACAGACTCTTGGATCTGAAGGGTTACAGGTGTCCTTCAGTCTTTCTAATATCCACATGCCCAGGATGTGGGTCGAGAACCATCCGGATAAAGATAGTCAGGCCTGCATGCTGGTGTTTTATCCAGACTTTAAGTCAAGCGGGGTGTCCAGCTCTGGAGGTCCATCCAGCGTGAGCGATGTGATCATCCTACTGGACTCCTCCAAGTCCATGCGGGGAGACGCCATGCTGAACGCCCGCAGGATTGCCCTTCAAGTCCTCAAATCTCTGGACCGCTCACTGAAGATCAACATCATCTCTTTCAGCACTGGTTACAAGGAAGCTTTTCCTGCACCAGTGCCTTTAGATGAAGCATCTGAACCAGCCAGAAAGTTTATTATGTCCTGTAGTGGTGCTGGTGGCGGCACTGAGCTGTGGTGGCCTCTCCGGAGCCTGAGCCTGCTGCCTCCCTGCCGGGGTGTGAGGAACATCCTGCTGCTCTCTGATGGACATGTTCAGAATCAGCCTCTGACCCTACAGCTGGTCCGAGAAAACTCCTGCCACACGCGTCTCTTCACCTGCGGACTCAGCTTGACAGCTAATCGTCATATGCTCAGAGCTTTGGCTCAAGCAGGTGGAGGAACATATGAATTTTTTGACACCAAGATGAAACACACTTGGGCAGAGAAGGTGCGCGCTCAGGTTCAGCGTATGGAGTCTCCAGGCTGCAGATCAGTGGCAGTGAAGTGGCAGCAGTTTAATCCCACAGCGCCCCCTCCTGTTCAAGCCCCCTCACAGCTTCACGCCCTCTTCAGTGACTGTCACACTCTCATATACGGCTTTGTGCCGCACTGCACTAAGGACCAGAATGAGCTTGACACTGGATTGACAGATATTCCTAAACTCATATCAGAGGAGGATGTGGATATTTTGCCATATATGGGCTGGACTGAAGAGAAGCGCAAGGCTGCGCATTTTATTGCTGCTGAAGAAGATCACATATGGTTGAAATCAGCGGAATGGTCCAGTGACATGTCCACATATAATCTCCTGGATTTTGATTGTATTACACGTCCTGTGGGGAGTTGCTATGAAGAAGAGTATGATGATCTAGAAGCAGCTGCCACTGTCCATGAGATCATGTCCAGCTCTCCTTATTTAAAGACATGCTTCACTCCTATTTCTATGAGTAGCACTGAATTTCATGAAGACTTAGCATTGGAAGAAATTATTGAAAACCTAGATTTTATGCCTGTTAGTAACATGCAATTAAGTGCTCCACAGCTTCCCCCTTCCCCTGGCATCATGACTGGTGCCCCAATATCTGCACCTATTTCCACGAGTTACATGGAAAACTTGCTGGCTCCCCCTCTTCATGCTGCCTCTGTTTCCTTTGGTCAACCTAAAACTTGTAAGCTTGCCTTTGGATCTGGTAGCCTTCCTGTCGTCCCGCAAAACACAACTGAGCCTCTAGGGTATTCTGGTTACTCAGCCTTTAGCTTTGGAGCATCTCAGCAACAACAAAAACCCTTTGCGTTTTCTGCACCTGGTGTGAAGGCTCACGCGGACATTCTGAGACTGGTGGCGACTCTGCTGGTGCTGCAGCTGATCCGGGTGAAGAAGCTGGCAGTGGGAGAGTTGCTCGAGTCTCTCTTCCGGCTGAAAGAGTCCCAAGAGCCAAGACCGATGCACTGGGAGGCAGTGAAGAGGGCCGTGGACTGGGCCTGTCGGACAGACAGACAGTATCCGTGTGTGTGCAGCAGGCTGGAGATCGGCTGGGATTGGGAATCATCTACACGTCAGTTACTGGGCTGTGATTCTCCAAACCCATATTCCCCTCTCAAAGCTGTTCTGGAGAGACGTATGACAGACTGTAAGGCAGTGATCAGCACGTTACCGGGACAGACTCTTGGATCTGAAGGGTTACAGGTGTCCTTCAGTCTTTCTAATATCCACATGCCCAGGATGTGGGTCGAGAACCATCCGGATAAAGATAGTCAGGCCTGCATGCTGGTGTTTTATCCAGACTTTAAGTCAAGCGGGGTGTCCAGCTCTGGAGGTCCATCCAGTGTGAGCGATGTGGTCATCCTACTAGACTCCTCCAAGTCCATGCGGGGAGACGCCATGCTGAACGCCCGCAGGATTGCCCTTCAAGTCCTCAAATCTCTGGACCACTCACTGAAGATCAACATCATCTCTTTCAGCACTGATTGCAAAGAAGCTTTTCCTGCACCAGTGCCTTTAGATGAAGCATCTGAACCAGCCAGAGAATTTATTAAGTCCTGTAGTGGTGCTGGTGGCGGCACTGAGCTGTGGTGGCCTCTCCGGAGCCTGAGCCTGCTGCCTCCCTGCCGGGGTGTGAGGAACATCCTGCTGCTCTCTGATGGACATGTTCAGAATCAGCCTCTGACCCTACAGCTGGACCAGAATGAGCTTGACACTGGATTGACAGATATTCCTAAACTCATTTCAGAGGAGGATGTGGATATTTTGCCATATATGGGCTGGACTGAAGAGGATGAAGAAGATGAAGGAGATGACATATGGATGGATTCAAGGGAATTGTCCAGTAGCTGCTCCAGATCTCCTGATCTGCTGGGTTATGCTTATATAGAAGCAGCATTAGATGATGATGAAGATGATTCTGGGGATGACTATGACAAATATGATGATTGTTTAGATCAAAAAATGGATGTTGATATTTTTGAGTCAGTGAAACCTTCTTCTCCTCCTTCTGGTGGTGTCATCATGAGTGACAGGTTTCCTCCTCCTACTGCCACCCAAGTTGCCACCTCAATGCCTTTTCACTATGAATTTCCCTGTTCCTCATTGGAATCTTACTCCTCAAATTACAGCCTTGAATCCCAGACAGACACGACTCCTGTAGTTGCCTCAGTTGGTGCTCCCCTTCCTTATCACGTTCATGTCATTCGTGGGTCAATGGAACCTCGCTCCCTCACTAACTGGATTTCTTCTCAACCTCCTTCTGTTGATTCCAGATATGAGTCCATATCTAACTCCGTGACTGACAAGCTTCCCCCTCCACCTCCCCCTGCTGCCTCAGTGCCTCCTCCCCATCTTAATTCTGCATCAGCGGAATCTCGTTCCATAGAATGCAGCCTTGCTTCCTTTAGCAGCATGAGTGGAACTTCTGCCCTTCGCCGTGCCCCAGCACCCGAGCTTAACACCTCAACTTCTCTCTTTGGAGGTTCTCTTCCGCCTTTTAATCTTGCAACTATGTCGTACTTGTCTCGCAGCTCTGCTCCTCCATCTTTTTTTAGCACGGTGGGCGCATCTTTTTCAACAAATGAAACTCCTGCCCTTCGCTGTTTCTCAGAGATTGAGTGTGCCACCACAACTCCTGACTTTGCAGGTCGTCCTCTTCCTCCTCGTTTTGCATCTAAGCAGTACTCGTACAATCTAAACAGTACCAGCCTTACTCCTCCTCTTACTGATTTTGGAAGGGTGGACAAATCTTTTTCAAGGAGTAGCAAGGCTGCTGACCCTGCTGTCTTTGGTCTTCCCATAATATATACGTCGCTCTCTCCCCCTGCATCTGGTGGCATTGGTGGTTTCCTCCAAAGTACAAATGAGCCTTTGGGCCTTTTTGGTTCCTCATCCTCTGGACTTTTTGAAGCATCTCATCGACAACGGCCACAACAAGCAGCACAAAAACAAGTACAAAGACAAAACCTACCACAGTCATTAGAGGGCCGTGGACTGGGCCTGTCGGACAGACAGACAGTATCCGTGTGTGTGCAGCAGGCTGGAGATCGGCCGGGATTGGGAATCATCTACACGTCAGTTGCTGGGTTGTGATTCTCCAAACCCATATTCCCCTCTCAAAGCTGTTCTGGAGAGACGTGTGGGTGTATCAGTCATGTAGAAACTGGACACGTACTTCTCTCTTCATTTACAGTTGTTAGAGGTGAACTAACCCTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTTACTCGCCCCCATGTAGTTCTAAATCCTTAAGACTTTCGTTCATCTTCAGAACACAAATGAAGCCATTTTTAATGAAATATGAGAGATTTCTGTCCCTCCATTGAAAGTCTATTCACCCAAAACTCTGACATTTCAAAATGTTCATAAAAAGATTTTAAAATAAATCCATATGAATTGAGCGACTTATAAGTCTTCTGAAGAGACACGATCGCTGTATATGATGAATAGATTAATTTAGCCATTTATTAATCATAATCACATATAAACATTAATCAGCGAACAATGTTTACAGCCTTCAGTTTTGGTCATGGAAGCTCAAGAATGCTTGCTTGACGCACGAGAACCAGTGAAGTTCATTCTCTCATGATACACCAGCATGTTTGAGCTTCCACAAGAATCAATGAGGTTTGTTCTCGCAGGTCAAGAATGGCTGAGCTTTTGTTTATGTTTGCTGATTTTTGGATGAACTATCCCTTTAATATTGCAAAAAAACTACTGTTATAGCTTTAAAGTCGTGTCAACAATATATTTGGAAAATTGTCACACGTAAAATGTCAGAAGATAGAAAATGTCAAAAAAAATGTCATTTAACAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10271506_10292564.mRNA True 5102 mRNA 0.47 22 10270745 10292564

Neighbor

gene id symbol gene type direction distance location
CI01000009_10261399_10263994 VTCN1 coding downstream 6751 10260600 ~ 10263994 (-)
CI01000009_10250936_10259244 TRIM45 coding downstream 11501 10250896 ~ 10259244 (-)
CI01000009_10149267_10242850 MGC130950, MAN1A2.L, MAN1A2 coding downstream 27895 10149267 ~ 10242850 (-)
CI01000009_10137314_10138474 MAN1A2, FAM46C coding downstream 131220 10137091 ~ 10139525 (-)
CI01000009_10089124_10102162 WDR3 coding downstream 168583 10087937 ~ 10102162 (-)
CI01000009_10297628_10300270 NA coding upstream 5064 10297628 ~ 10301102 (-)
CI01000009_10305247_10317487 NA coding upstream 12613 10305177 ~ 10317744 (-)
CI01000009_10330884_10337327 NA coding upstream 38216 10330780 ~ 10337327 (-)
CI01000009_10355985_10360375 CYP27A7 coding upstream 63171 10355735 ~ 10360375 (-)
CI01000009_10414678_10421940 NA coding upstream 121244 10413808 ~ 10421940 (-)
G57276 NA non-coding downstream 12140 10257887 ~ 10258605 (-)
G57240 NA non-coding downstream 71326 10190610 ~ 10199419 (-)
G57245 NA non-coding downstream 126195 10142610 ~ 10144550 (-)
G57234 NA non-coding downstream 133975 10082118 ~ 10136770 (-)
G57035 NA non-coding upstream 10881 10303445 ~ 10304468 (-)
G57311 NA non-coding upstream 26155 10318719 ~ 10318989 (-)
G57283 NA non-coding upstream 146884 10439448 ~ 10442918 (-)
G57349 NA non-coding upstream 219852 10512416 ~ 10512647 (-)
CI01000009_08858198_08860555 NA other downstream 1410182 8856310 ~ 8860563 (-)
G55814 NA other downstream 1842733 8425821 ~ 8428012 (-)
G53515 NA other downstream 4765497 5502395 ~ 5505248 (-)
G52828 NA other downstream 6039276 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 7008788 3261038 ~ 3262843 (-)
G59097 NA other upstream 1995653 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 3682824 13975099 ~ 13978614 (-)
G59490 NA other upstream 3741000 14033564 ~ 14037873 (-)
G59811 NA other upstream 4569833 14862397 ~ 14887464 (-)
G59941 NA other upstream 4839540 15132104 ~ 15132503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037068 parp4 coding NC_007120.7 CM002893.2 20483846 ~ 20502622 (+)