foxred2 (foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836)


Basic Information

Item Value
gene id foxred2
gene name foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11586489 ~ 11597328 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673618.1
tgagctgagctgaggaggaggaggaggatgttATGGAAGTGACTGAAACAGACACAGGGATGTTAACGTTAATCATGCACAAATCATTTACTGCTTATGTACAGAGTTCTGAATGACAGAGGGAGCTGCCATGGTGAGAGTGCTGAtggagctggtgctggccaTCCTCTGCCTCCTGTCAGTAGTTTCTCGGGTCCTCAGTGTCTCTGGTGAACATTATGGGATTAACAAAACTCACCACCACGATTACTGCATACTGGGGGCTGGACCTGCAGGCCTGCAGATGGGTTACTTCCTCTCCCGGAGTCACAGAGACTATATAATATTAGAGCGAAACACTGGACCTGGAAGTTTCTTCCAGAGGTATCCTCGACATAGAAAACTTATCAGCATCAATAAGATCTACACAGGGAGACAAAACAAGGAATTCAACCTGCGTCATGACTGGAACTCTCTGCTGAGTGACCAGCCGGACCTGCTGTTTCAGAGAGTCAGTGAGGACCTGTACCCTCACGCTGACGCCTACCCCCTCTACCTCTCTATGTTTGAGAGAGAGCTGGGACTGCGGGTTAAATACGCCACTGATATAGGAAAAGTTCGAGCTGCAGATTTCACTGGAAGCAAAGGCTACATACTGACTGATCAGCATGGGGCAGATTATAAATGCAGGGTTCTGTTTGTGTGCACTGGCCTGTGGGTTCCTCAGCAGGTGGATTTTGTTGGCTCTGACTTGGTGGAAGGCTACGAGTCCATTCCCACAGATCCTGAGGATTACAAAAATCAGGCTGTGTTGATCTTGGGCAAAGGAAACTCCGCCTTTGAGACGGCGCAGAGCATTTTGGGCAGAGCCAGCCGGATCCACATGTACAGCCCGAGCCCTGTGCGACTAGCCTGGAAGACACACTATGTTGGAGACCTCAgGGCGGTGAATAATGAACTATTAGACACTTACCAGCTAAAGTCTCTGGATGGTTTAGTAGAGGGAGGACTGGAGGACATTGCCATTGTCCGTAGGGGACAAGATGGAGGGAAAAGTAGGAGAACTGGGGGAAAAAAGAGGACTGTTAAATCTACAGAGAGGAAAGAACAGTTCTACCTTACTCTCTCTGAACTTTTGGATAATCGTAACAGCAACAAAAGCGGTAACATTACTGCTGAAAATCTGCCTGGATATCATGACGACAACTTCTCATTACGGCAACCGTATGACCGAGTGATCCGCTGTCTGGGGTTCCGCTTCAACTTCTCCATCTATGACggCTCAGCTCGCCTGCTGCACAGCAGTTGTGCTCGTGGCCGCCTTCCAGCATTAACTGCGTGGTATGAGGGCAGGGGAACCCCCAACCTGTTTGTCTTGGGAACAGCTGCCCACTCCAGAGACTACCGCATGTCCGCTGGAGGCTTCATTCATGGGTTCCGTTACACAGTGCGTGCAGTGCATAAGGTGTTGGAACAGCGTTACCACAACATTGCTTGGCCAGCTACCAGACTGTCCACCAGTCAGCTGCTTTCCTGGATTTTGAAAAGAGTGAATGAAGCTTCTGGACCATACCAAATGTTTGGGGTGTTGGGGGATGTTATACTGCTACAGGGctctcactgtgagtatCTGGAGGAGTTTCCAGTGCAGGCCATGCCTCAGTTGTCCACTCTGTCAGGCCGACTTGTCTCAGAACATGGCCTCCTTGTCCTGGTCATGCAGTACGGACTGAACCGAACCGACACACTCGGGCCTGGCCGTGCTGAGTCCGAGTGGACCAAAGCCTGGAAGTCCAACTTCCTCCACCCGGTCATTTACTACTACCGCAAACTTCCAACTGAGAAAGATATGAAGCAGCGTCCGGTTGGTTGGCCACTGCCGCGTCCTGATGCTGTGCATCACATGGTAGAGGACTTCCTGACCGAGTGGGATCAGCCCATCTCTCACAGCCAGCCACTCAGGCACTTCCTCGAGCACTGCCTTCAGACTGATCTCAGAGCATTCTATGCAGaATCTTGTTTTCGACTTTCCCTAACCAGTCGCAAGCCGCCCCTGTTCTGCCAGCAGGGCTACCTAAACAAACAGGGCTTTGTGGGAAACAGCCACCTGTGGCAGCACGCCCGAGAGGCTGGACTCATGCCAGCTCATCAGGGCTCAGTTACTCCTGCTGGTGACGGGACGTTTTCTGAATTCCTGACCCACGCTGGTGCTGCAGTGACTTCAACAATCAACTTTGACCTTTAAACGAACTTAAACCAAAGACTAAATTATCCGTGGTTCTGAAACTCGGTACTTTCTGTCTATACCTTTTTATGGTACTTCATAAATGCCTCATATTTTCATCCAGgattattattgttatgttaAAAATTGTTAGAATTTGATATTAGCAGTTCTTCTCTAAATAATGATGTGTATATGTTGGGTTGGGTTCTGCTATgaaatacttaatttattttttatacgtGCCAGGTACtgaactgattttttaaaaaggactgATACATGCCAGTATTGAGTGAGGATTGTTACAGATATACTGTACAAGCTACAGTTTTAACAAGATATAAGGGAACAGTCACCCAGACTTTGAGACAGTgaacatatttataataaaattagtTATTGTGAA
>XM_022673626.1
tgagctgagctgaggaggaggaggaggatgttATGGAAGTGACTGAAACAGACACAGGGATGTTAACGTTAATCATGCACAAATCATTTACTGCTTATGTACAGAGTTCTGAATGACAGAGGGAGCTGCCATGGTGAGAGTGCTGAtggagctggtgctggccaTCCTCTGCCTCCTGTCAGTAGTTTCTCGGGTCCTCAGTGTCTCTGGTGAACATTATGGGATTAACAAAACTCACCACCACGATTACTGCATACTGGGGGCTGGACCTGCAGGCCTGCAGATGGGTTACTTCCTCTCCCGGAGTCACAGAGACTATATAATATTAGAGCGAAACACTGGACCTGGAAGTTTCTTCCAGAGGGTTCTGTTTGTGTGCACTGGCCTGTGGGTTCCTCAGCAGGTGGATTTTGTTGGCTCTGACTTGGTGGAAGGCTACGAGTCCATTCCCACAGATCCTGAGGATTACAAAAATCAGGCTGTGTTGATCTTGGGCAAAGGAAACTCCGCCTTTGAGACGGCGCAGAGCATTTTGGGCAGAGCCAGCCGGATCCACATGTACAGCCCGAGCCCTGTGCGACTAGCCTGGAAGACACACTATGTTGGAGACCTCAgGGCGGTGAATAATGAACTATTAGACACTTACCAGCTAAAGTCTCTGGATGGTTTAGTAGAGGGAGGACTGGAGGACATTGCCATTGTCCGTAGGGGACAAGATGGAGGGAAAAGTAGGAGAACTGGGGGAAAAAAGAGGACTGTTAAATCTACAGAGAGGAAAGAACAGTTCTACCTTACTCTCTCTGAACTTTTGGATAATCGTAACAGCAACAAAAGCGGTAACATTACTGCTGAAAATCTGCCTGGATATCATGACGACAACTTCTCATTACGGCAACCGTATGACCGAGTGATCCGCTGTCTGGGGTTCCGCTTCAACTTCTCCATCTATGACggCTCAGCTCGCCTGCTGCACAGCAGTTGTGCTCGTGGCCGCCTTCCAGCATTAACTGCGTGGTATGAGGGCAGGGGAACCCCCAACCTGTTTGTCTTGGGAACAGCTGCCCACTCCAGAGACTACCGCATGTCCGCTGGAGGCTTCATTCATGGGTTCCGTTACACAGTGCGTGCAGTGCATAAGGTGTTGGAACAGCGTTACCACAACATTGCTTGGCCAGCTACCAGACTGTCCACCAGTCAGCTGCTTTCCTGGATTTTGAAAAGAGTGAATGAAGCTTCTGGACCATACCAAATGTTTGGGGTGTTGGGGGATGTTATACTGCTACAGGGctctcactgtgagtatCTGGAGGAGTTTCCAGTGCAGGCCATGCCTCAGTTGTCCACTCTGTCAGGCCGACTTGTCTCAGAACATGGCCTCCTTGTCCTGGTCATGCAGTACGGACTGAACCGAACCGACACACTCGGGCCTGGCCGTGCTGAGTCCGAGTGGACCAAAGCCTGGAAGTCCAACTTCCTCCACCCGGTCATTTACTACTACCGCAAACTTCCAACTGAGAAAGATATGAAGCAGCGTCCGGTTGGTTGGCCACTGCCGCGTCCTGATGCTGTGCATCACATGGTAGAGGACTTCCTGACCGAGTGGGATCAGCCCATCTCTCACAGCCAGCCACTCAGGCACTTCCTCGAGCACTGCCTTCAGACTGATCTCAGAGCATTCTATGCAGaATCTTGTTTTCGACTTTCCCTAACCAGTCGCAAGCCGCCCCTGTTCTGCCAGCAGGGCTACCTAAACAAACAGGGCTTTGTGGGAAACAGCCACCTGTGGCAGCACGCCCGAGAGGCTGGACTCATGCCAGCTCATCAGGGCTCAGTTACTCCTGCTGGTGACGGGACGTTTTCTGAATTCCTGACCCACGCTGGTGCTGCAGTGACTTCAACAATCAACTTTGACCTTTAAACGAACTTAAACCAAAGACTAAATTATCCGTGGTTCTGAAACTCGGTACTTTCTGTCTATACCTTTTTATGGTACTTCATAAATGCCTCATATTTTCATCCAGgattattattgttatgttaAAAATTGTTAGAATTTGATATTAGCAGTTCTTCTCTAAATAATGATGTGTATATGTTGGGTTGGGTTCTGCTATgaaatacttaatttattttttatacgtGCCAGGTACtgaactgattttttaaaaaggactgATACATGCCAGTATTGAGTGAGGATTGTTACAGATATACTGTACAAGCTACAGTTTTAACAAGATATAAGGGAACAGTCACCCAGACTTTGAGACAGTgaacatatttataataaaattagtTATTGTGAA

Function

symbol description
foxred2 Predicted to enable flavin adenine dinucleotide binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Orthologous to human FOXRED2 (FAD dependent oxidoreductase domain containing 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673618.1 True 2612 mRNA 0.48 10 11586489 11597328
XM_022673626.1 False 2306 mRNA 0.48 9 11586489 11597328

Neighbor

gene id symbol gene type direction distance location
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 9649 11564449 ~ 11576840 (+)
gcat gcat,LOC107703894 coding upstream 23942 11555137 ~ 11562547 (+)
LOC103043560 LOC108432223,LOC107726800 coding upstream 110791 11441057 ~ 11475698 (+)
LOC103042933 atp5h,LOC103042933,LOC103361245,LOC107670447 coding upstream 242229 11338585 ~ 11344260 (+)
LOC103042308 ndel1,ndel1b,LOC108432229,LOC107670517,LOC107744966,LOC107599320 coding upstream 266711 11301473 ~ 11319778 (+)
ankrd54 ankrd54 coding downstream 975 11598303 ~ 11605494 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding downstream 8796 11606124 ~ 11622342 (+)
LOC103045592 NA coding downstream 26355 11623683 ~ 11631900 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding downstream 147084 11744412 ~ 11750209 (+)
LOC103023317 LOC108432209,LOC108260824 coding downstream 285403 11882731 ~ 11917275 (+)
G9727 NA non-coding upstream 2330 11582551 ~ 11584159 (+)
G9708 NA non-coding upstream 37358 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 80599 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 87868 11495734 ~ 11498621 (+)
G9656 NA non-coding upstream 178255 11407983 ~ 11408234 (+)
G9730 NA non-coding downstream 23674 11621002 ~ 11621408 (+)
G9770 spc24 non-coding downstream 157735 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 240312 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 519689 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 554577 12151905 ~ 12198169 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 148157 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1556899 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 1974677 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2655484 8919829 ~ 8931005 (+)
G9113 NA other upstream 2776022 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 705199 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 930361 12527689 ~ 12600530 (+)
G10003 NA other downstream 1016363 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1176885 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1537273 13134601 ~ 13135118 (+)

Expression


Co-expression Network