hmgxb4 (hmgxb4,LOC106607053,LOC106601319)


Basic Information

Item Value
gene id hmgxb4
gene name hmgxb4,LOC106607053,LOC106601319
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11606124 ~ 11622342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673630.1
TAATCAgcttaaaatgatcatttttggTGGGTAACACAGAACCACACAACCTTAAATCCTCCTATTTTCCCATGGCTATACTTTGAGTTGTGCACTACTGGTAGTGCACATAAGCATGTCATAACGTGAACAGAATTCTTATCTTGAAATTGAGCTATGAATGATTGTTATTCTGTGTCTGTATGGCTGTGTGAGCTGGTTTTAATGAGAGTAGCTCAGCTGGCTGCTGGTTCTCTCTATGCTCCTCTCTGGCTGCTGTGGACCCTCCTCTCAGCTCGCCGCTTTGTTGTTGACTGAAATTAAAGATGGCGACCGGCGCTGCCTAAATCGAGACATCGGCGAAGCAGGGTGTCAGTCAATACGACTGACTGGTAAAACCCAGCCAATAAAGGAAGAATGACCATGGCCTTTGAGGAGATAAAGAAGAAAGGAGTGATGGaTTTAGGCATGGAGGGCGAGATAGGGCTGGTGGCTGGCCGCAGTCAGAGGGAGAAGAGGCGGTCATATAAAGATTTgttgagagaggaggaggaaattGCAGCGCAGGTGCGCAAAACATCCAAGAACCGGCCAAAGGACTCAGAGTTGTTTTCGATGGGAGGAGATTCacataagaagaagaagaaacactCTGATGACTATTATCACAGAGATCACCACGGTTCAGGTCCTCCTCCCCATAAGAAGAAACGCAAGTCTTCAGACCGCTCACCctcactctcctcctcctcatcctcacaGCCCCCCCACTCCACAGACACTGCTATGGGCCTCCTGCAGGCCATTACCTCCCCTCTGGCCACAGGTTCAGACCCTAGCCCACACCTGAACAAAAAACCATCCTACCCCCCCCATTCCTCCCACTCCTCCTCTAAAGACCGTAAGCGTGAAGGTGGATCCAAAAGCAGCCATTCCTCCTTCTCACATGCCCGCCCGCCCGGCTCTGTTCCATCCTCATCCAAGAAGCACTCTTCGTCCTCGTCTTCCTCTTCCTCAAAGTCGTCCCTGTTCCACGGGGGTGCGGGGAGGGGCGAGCCGCTCACTCTGCGAGATGCAGAGGGGCTGAAGATGAAGCTCATCCTTTCACCAAAGGAGAGGAATGAGGGAGGAGGACCGAACGAGGGGTTCACCTTCCCTCCGCACTCCTCCCCTGGAACAGTGGGACATCACTTGTCTTCCAGTGTGAAAAAAGCAGGAATAAAGAAGGAGAAGGTAAAGGACCGGACGGCGTCATCCAAACCATCGAAGAAGAAACAGCACGGCCGAGAGCCTCTTCCTGTGGTAGGGAAGGAAGTGGAAGTTGAGGGACACTATGGTGGGCCTTTAGGAGGACTGGGAGGTGACAGTTCATCTTCAGGAGGAGAACTAGAAGCAGGTGAACTAATCATTGACGATTCCTATACACATCTctccaaaaagaagaaaaagagcaagaagagcaaaaagaaaaaggagaaagagaaagaccgGGACAAGGATAAGAGCTCTAAGGAGAAGAAGCACAGCAAGAGTGGAAGTACAGGAAAGAAAGGATTCACAGGGGACTTGTCCAGAAGTCATTCCCATTCTCACAGCTCTTCTAATCATGGCACTTCAGGAGGGATGTACACCATGGCACCTCCAGTCCAGtcacatcatcaccatcatcatcaccaccatcagaGCAATGACCACATgatagagaagaagaaaaagaaagaggagaaggagagggaCAAGCACGACAAGGATAAGCCAAAGAAGAAGAGTATGACAGCGTACCAAGTGTTCTGTAAAGAATACAGACTCAACATAAATGCAGAACAGCCTGGACTTGtCTTTGGAGAGCTGAGCAAGAAGCTTGCAGAGATTTGGAAGCAGCTgcctgaaaaagaaaaacaggcCTGGAAGCAGAAAGCTCAGTATCTTCAACATAAACAGAACAAAGCTGAAGCCACCACAGTTAGGCAGAAGAGCTCTCTGCTGGACAACAGAAGCAAAAtgtccaGTAAGGCTGGGTTAGGATCAGGTTTGACCTCTCCAGGTCGTTCTTCTCTGGGAATGTCTCCAGTCCGGGTGCCAGAGGTGGATCCCATCGATGCTGCTGCTCACCTACAGCTGCTAGGAGAGTCTCTCTCGCTAATTGGACACCGGCTACAGGAAACCGAGGGAATGGTGGCAGTGTCTGGCAGCCTCTCTGTCCTTCTAGACTCCATATTGTGCGCCCTTGGTCCGTTAACCTGCCTCACTGCCCAGGTCCCCCAGCTCAACGGCTGCCCTCGCAGCGTCCTGTCAAACACCCTGGACAACATAGCTTACATAATGCCTGGACTATGAATCCTCACACTAGAGACCTGAAGGTTTTACCCGAAACCACATTTCCAAAAGTCGGACTTACTCGTCATGCAGCACCTGTTTGTTTTAAGGCCACTTAACAAGAACAGAACCAGAGGATTTTTATCAATGCTCAGATCAAGTGTgggagaaacaaaaacaatggaCATTTGTAGTGGTAGatgttttttaaagcaatttttaaatgttaaatatttttaaattgtactttAAAAAAGGAATCAGGAGTCCTGTTTTAGAGAACATGTCTGTGTAGCGTTTTAtcattgctgtttgtgtttttgtgtgtgtgtgtgtatgtgtatgtttgtgtgaatgtttctgTAAGGGAATTTGTTAGTGTTCTTATCTGACTTGTGTACTTCATGATTTCCAGagcaatttatttttatgcagAAATGTACAGTTTCATGTCGGGGCCCaaggctgtttttttattaatttaccattaagttaatataaacaAACCGCAGTTTGACTGCAGTTAGTCATTTTATTGTGTCATTTACAGTTTtgtacatttacaaaaaatggaAGACTAtgatttaaatgttaaagtttgtttaTAGTAAAAGCATGAATTGAAAGTT
>XM_022673634.1
GTAATCAgcttaaaatgatcatttttggTGGGTAACACAGAACCACACAACCTTAAATCCTCCTATTTTCCCATGGCTATACTTTGAGTTGTGCACTACTGGTAGTGCACATAAGCATGTCATAACGTGAACAGAATTCTTATCTTGAAATTGAGCTATGAATGATTGTTATTCTGTGTCTGTATGGCTGTGTGAGCTGGTTTTAATGAGAGTAGCTCAGCTGGCTGCTGGTTCTCTCTATGCTCCTCTCTGGCTGCTGTGGACCCTCCTCTCAGCTCGCCGCTTTGTTGTTGACTGAAATTAAAGATGGCGACCGGCGCTGCCTAAATCGAGACATCGGCGAAGGGTGTCAGTCAATACGACTGACTGGTAAAACCCAGCCAATAAAGGAAGAATGACCATGGCCTTTGAGGAGATAAAGAAGAAAGGAGTGATGGaTTTAGGCATGGAGGGCGAGATAGGGCTGGTGGCTGGCCGCAGTCAGAGGGAGAAGAGGCGGTCATATAAAGATTTgttgagagaggaggaggaaattGCAGCGCAGGTGCGCAAAACATCCAAGAACCGGCCAAAGGACTCAGAGTTGTTTTCGATGGGAGGAGATTCacataagaagaagaagaaacactCTGATGACTATTATCACAGAGATCACCACGGTTCAGGTCCTCCTCCCCATAAGAAGAAACGCAAGTCTTCAGACCGCTCACCctcactctcctcctcctcatcctcacaGCCCCCCCACTCCACAGACACTGCTATGGGCCTCCTGCAGGCCATTACCTCCCCTCTGGCCACAGGTTCAGACCCTAGCCCACACCTGAACAAAAAACCATCCTACCCCCCCCATTCCTCCCACTCCTCCTCTAAAGACCGTAAGCGTGAAGGTGGATCCAAAAGCAGCCATTCCTCCTTCTCACATGCCCGCCCGCCCGGCTCTGTTCCATCCTCATCCAAGAAGCACTCTTCGTCCTCGTCTTCCTCTTCCTCAAAGTCGTCCCTGTTCCACGGGGGTGCGGGGAGGGGCGAGCCGCTCACTCTGCGAGATGCAGAGGGGCTGAAGATGAAGCTCATCCTTTCACCAAAGGAGAGGAATGAGGGAGGAGGACCGAACGAGGGGTTCACCTTCCCTCCGCACTCCTCCCCTGGAACAGTGGGACATCACTTGTCTTCCAGTGTGAAAAAAGCAGGAATAAAGAAGGAGAAGGTAAAGGACCGGACGGCGTCATCCAAACCATCGAAGAAGAAACAGCACGGCCGAGAGCCTCTTCCTGTGGTAGGGAAGGAAGTGGAAGTTGAGGGACACTATGGTGGGCCTTTAGGAGGACTGGGAGGTGACAGTTCATCTTCAGGAGGAGAACTAGAAGCAGGTGAACTAATCATTGACGATTCCTATACACATCTctccaaaaagaagaaaaagagcaagaagagcaaaaagaaaaaggagaaagagaaagaccgGGACAAGGATAAGAGCTCTAAGGAGAAGAAGCACAGCAAGAGTGGAAGTACAGGAAAGAAAGGATTCACAGGGGACTTGTCCAGAAGTCATTCCCATTCTCACAGCTCTTCTAATCATGGCACTTCAGGAGGGATGTACACCATGGCACCTCCAGTCCAGtcacatcatcaccatcatcatcaccaccatcagaGCAATGACCACATgatagagaagaagaaaaagaaagaggagaaggagagggaCAAGCACGACAAGGATAAGCCAAAGAAGAAGAGTATGACAGCGTACCAAGTGTTCTGTAAAGAATACAGACTCAACATAAATGCAGAACAGCCTGGACTTGtCTTTGGAGAGCTGAGCAAGAAGCTTGCAGAGATTTGGAAGCAGCTgcctgaaaaagaaaaacaggcCTGGAAGCAGAAAGCTCAGTATCTTCAACATAAACAGAACAAAGCTGAAGCCACCACAGTTAGGCAGAAGAGCTCTCTGCTGGACAACAGAAGCAAAAtgtccaGTAAGGCTGGGTTAGGATCAGGTTTGACCTCTCCAGGTCGTTCTTCTCTGGGAATGTCTCCAGTCCGGGTGCCAGAGGTGGATCCCATCGATGCTGCTGCTCACCTACAGCTGCTAGGAGAGTCTCTCTCGCTAATTGGACACCGGCTACAGGAAACCGAGGGAATGGTGGCAGTGTCTGGCAGCCTCTCTGTCCTTCTAGACTCCATATTGTGCGCCCTTGGTCCGTTAACCTGCCTCACTGCCCAGGTCCCCCAGCTCAACGGCTGCCCTCGCAGCGTCCTGTCAAACACCCTGGACAACATAGCTTACATAATGCCTGGACTATGAATCCTCACACTAGAGACCTGAAGGTTTTACCCGAAACCACATTTCCAAAAGTCGGACTTACTCGTCATGCAGCACCTGTTTGTTTTAAGGCCACTTAACAAGAACAGAACCAGAGGATTTTTATCAATGCTCAGATCAAGTGTgggagaaacaaaaacaatggaCATTTGTAGTGGTAGatgttttttaaagcaatttttaaatgttaaatatttttaaattgtactttAAAAAAGGAATCAGGAGTCCTGTTTTAGAGAACATGTCTGTGTAGCGTTTTAtcattgctgtttgtgtttttgtgtgtgtgtgtgtatgtgtatgtttgtgtgaatgtttctgTAAGGGAATTTGTTAGTGTTCTTATCTGACTTGTGTACTTCATGATTTCCAGagcaatttatttttatgcagAAATGTACAGTTTCATGTCGGGGCCCaaggctgtttttttattaatttaccattaagttaatataaacaAACCGCAGTTTGACTGCAGTTAGTCATTTTATTGTGTCATTTACAGTTTtgtacatttacaaaaaatggaAGACTAtgatttaaatgttaaagtttgtttaTAGTAAAAGCATGAATTGAAAGTT

Function

symbol description
hmgxb4 Enables identical protein binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Part of NURF complex.

NR:

description
PREDICTED: HMG domain-containing protein 4 isoform X1

GO: NA

KEGG:

id description
K11298 HMG2L1; high mobility group protein 2-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673630.1 True 2924 mRNA 0.47 13 11606125 11622342
XM_022673634.1 False 2922 mRNA 0.47 13 11606124 11622342

Neighbor

gene id symbol gene type direction distance location
ankrd54 ankrd54 coding upstream 630 11598303 ~ 11605494 (+)
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding upstream 8796 11586489 ~ 11597328 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 29284 11564449 ~ 11576840 (+)
gcat gcat,LOC107703894 coding upstream 43577 11555137 ~ 11562547 (+)
LOC103043560 LOC108432223,LOC107726800 coding upstream 130426 11441057 ~ 11475698 (+)
LOC103045592 NA coding downstream 1341 11623683 ~ 11631900 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding downstream 122070 11744412 ~ 11750209 (+)
LOC103023317 LOC108432209,LOC108260824 coding downstream 260389 11882731 ~ 11917275 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding downstream 321376 11943718 ~ 12070412 (+)
gaa LOC106601771 coding downstream 660928 12283270 ~ 12301714 (+)
G9727 NA non-coding upstream 21965 11582551 ~ 11584159 (+)
G9708 NA non-coding upstream 56993 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 100234 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 107503 11495734 ~ 11498621 (+)
G9656 NA non-coding upstream 197890 11407983 ~ 11408234 (+)
G9770 spc24 non-coding downstream 132721 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 215298 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 494675 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 529563 12151905 ~ 12198169 (+)
G9856 NA non-coding downstream 601358 12223700 ~ 12224690 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 167792 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1576534 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 1994312 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2675119 8919829 ~ 8931005 (+)
G9113 NA other upstream 2795657 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 680185 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 905347 12527689 ~ 12600530 (+)
G10003 NA other downstream 991349 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1151871 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1512259 13134601 ~ 13135118 (+)

Expression


Co-expression Network