LOC103045592


Basic Information

Item Value
gene id LOC103045592
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11623683 ~ 11631900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673643.1
gttcagagagagaaacagggctgggtttctgtttttttggtaGAAGAGAATGAGGAAGTGTTGAAAGAAACAACCGACAACCCTACACAACCGGACTGGATCAGAGAACATGGAGGAGCCTACAACACACAGCCACGAGGAGAGCACGGATCTTGAGCCAGagttgaGGCTGGTGCTGCTGGGCTTTGCTGGATCAGGGAAGAGCAGCGTGGGGAACGCCGTGCTCGGCTTTAAAGCGTTCGAAACCCGTCTCAGCGCCGAGTCCCAGAAGCCGGTTACACAGCAGTGTGAGAGGAAGTGTGGGATCGTCGCTGGAAAAAAGGTGGCGGTGATCGACACTCCAGACTGGTTCTTCTCAGAGCGCCCCCCGAAGGAAGTGCAGGGCCAGCTGTCTCTATGCAAATCGCTGTCCGGCCCGGGACCCCACGCCTTCCTGCTGTGCGTCTCTGTGCACCGGCCAGGTGAGCAGGATCTCCAAGCGTTGGATGCTTTGGGGAAGGTGTTTGGGCCAGAAGCTTTGAGCAAGCACACCGTCGTACTTTTCACTCGTGCGGAACGTCTTTCTGAAGACCTGCCGCTGGAGGAGTTACTGAGCGGCGAGCGCAAAGACCTGCAGGAGGTGGTGGCGAGGTGCGGGAATCGCTATCAGGTCCTGGAACTCGAAGAAGATGATGGAAAGAGTGTGGAAAAGCTGCTGGAGAAGGTGGAGGAGATGGTAAACGAGAGTGGGGAGGAATTCTACACCTTTCCATCACTTAAGAAAGCAGATTCGGAAATTAGAGGAACCGAGGGGAACGAAGAGCCAGACTTATCGTCTGAAATCATGTGtagaaagagaggaggaggaggtgaaggAGGAGATGAGGAAGAACAGGGCAGTGAGAAGGCTGAGAAGGTGAGTGCAGATGATCAGGAGGCGGTGGGAGACGAAGACACCACTTTATCACCTCCTGGACCTCCTCCTTCATTTCTGCGCTGGATGTGGGACAGTGTAATGGGTTGGGTGCTCTGGATACCCAGTCTGCTGAGGGGCAGCACATTACTCGGTTCCTTTGTGGGGCTGTTCGTTGGAGGAGTGTTCGGAGGGGTCATGGGAGCTACGGTGGGCTCGGTGGCCACTGAGGTGGGCAGGAGAAAACCTCAAAAAGCAAAAGAGAAATGACTTTGTCTACTTTTAGAACACTAAAACTTCATTAAAAAGCTCTTGACCAAGTCACTAAGCAAGATATTAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673643.1 True 1235 mRNA 0.54 4 11623683 11631900

Neighbor

gene id symbol gene type direction distance location
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding upstream 1341 11606124 ~ 11622342 (+)
ankrd54 ankrd54 coding upstream 18189 11598303 ~ 11605494 (+)
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding upstream 26355 11586489 ~ 11597328 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 46843 11564449 ~ 11576840 (+)
gcat gcat,LOC107703894 coding upstream 61136 11555137 ~ 11562547 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding downstream 112512 11744412 ~ 11750209 (+)
LOC103023317 LOC108432209,LOC108260824 coding downstream 250831 11882731 ~ 11917275 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding downstream 311818 11943718 ~ 12070412 (+)
gaa LOC106601771 coding downstream 651370 12283270 ~ 12301714 (+)
LOC103031044 NA coding downstream 820003 12451903 ~ 12463253 (+)
G9730 NA non-coding upstream 2275 11621002 ~ 11621408 (+)
G9727 NA non-coding upstream 39524 11582551 ~ 11584159 (+)
G9708 NA non-coding upstream 74552 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 117793 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 125062 11495734 ~ 11498621 (+)
G9770 spc24 non-coding downstream 123163 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 205740 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 485117 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 520005 12151905 ~ 12198169 (+)
G9856 NA non-coding downstream 591800 12223700 ~ 12224690 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 185351 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1594093 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2011871 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2692678 8919829 ~ 8931005 (+)
G9113 NA other upstream 2813216 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 670627 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 895789 12527689 ~ 12600530 (+)
G10003 NA other downstream 981791 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1142313 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1502701 13134601 ~ 13135118 (+)

Expression


Co-expression Network