LOC103046201 (s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889)


Basic Information

Item Value
gene id LOC103046201
gene name s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11744412 ~ 11750209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673649.1
TGCAAGTCTGATCCTGCAGCAGTAACACCCCCCTCAGCACCCCTGCTCCTCAGCTCAGTCTGTCAGAGCAGGCAGAGCGCGAGCACCCGGGGGCTACAGctcactcactactcactactcactactcacaACCACTGGAAACCACTGGAAACTACTAAAAACACTACTGAGGTTCCCCTTAAAAACCCAGACCTCCAGAGTTCCAGCAGCCAAAGTGATCTGAGCCAGCAGGAAACAAGGAGCGACAACCGATCTGCCGAGCAAAGCCTCAACAATTTGTGGATTTACTGCTTCCATCTTGTGGTGGAACCATGATTCCTCTAAGGACTAGTATGTAAGCAGAGAAGCTAAAGAAAGGTTGGTGAAAAGTATGGAAGCATCGCACGCTGCCTATGTTGCTGCGCATCCGACGGCGGCTCCCCTGACCCCGGCTGCGGGATACCTATTCAGAATGTTTCGGGAGTACCAGAGCAACGAGGTTATTGTGGAGCACTACAACTTTACTGGAAAGCTGAACAAGAACAAGTACAGGGATGGCCTGAAACCTGAAGCCATCGTGTTCCTCATTATCTGTCTGCTTATTGTTCTGGAGAACGCTGTGGTTCTTGTAGCAATCTGGAAGAATAAAAAGTTCCATGTGCCCATGTACTACCTGCTGGGCAACTTGACTTTCTCAGACTTGTTGGCAGGATTCACCTACATGGTGAACATTGTAACGTCAGGTGCCAACACTCTCAAAATGACCCCAGTCCAGTGGTTCCTGAGAGAAGGAGGAGTCTTCATAACGCTGGCTGCATCCATCATCAGCCTGCTGGCCATCGCCATCGAACGGCATGTCACAATGGTGCGGATGAAGCCCTACCAGGGGGCCAAGCGTGGACGAATGTTCGCCCTGATTGGTGTGAGCTGGGTGTTGTCTGTCTTCTTGGGTGTGCTGCCCATTATGGGCTGGAACTGCATGGGTAACCTGGAGCAGTGTTCCACAGTCCTGCCGCTCTATTCCAAGAGCTTCATCCTCTGTTGCATCACAGTTTTCACCGCCATCTTACTGGCGATCGTGGTGCTCTACGTCCGCATCTTCCACGTCGTAAAGTCCAACACCAAGCGACTCGGCTGCGGCCCTCAGCGCAAAGGTTCGGCCAAGAGGTCTCAGAAGTACATGGCTCTGTTGAAAACCGTCACCATCGTGCTGGGGGTCTTCATCGCCTGCTGGCTGCCCCTCTTTATTCTCCTTTTGTTGGACTTTTGCTGCCCAGCCCAAAGCTGCGAGGTGCTCTTTAAGGCGGACTACTTCCTGGGTATCGCTATGATCAACTCACTGCTCAACCCCATCATCTACACGCTAACCAGTAAAGACATGTACAAGGCCATCCTGAAACTGCTCTGCAGCTACTGTCTGCTGACTAAAGATGGACACTTGAAGAAGTTCGGAATACCCTTCTTGGAGTGCAGCACGAGTAAgacggaagtgccatcgcacaGGCTGGAGGGACTGGAGACAACAGTCTCCTCCGGAAACTTTACTCCAACCACGATAAAGACGATTTATCCCAAAATGTCAAAGACGTGAGTTTAGAGACTTTTGACATTTGTGTCAAGACTCTTACACGTTATACTATGGACTATATGATGTAGTAGAGTCAAAAGTGCCTCGACAGGAGGTCAGAGACTGCACAGACTGTACTGAAGGTGTTTCCTTTAAAGGgtagagatatacttgctgttaacTGCTTTAACTGCAGTCACGTACGCATATCGTCgttgtctaatgaaaaacaagtgtctccattttttcttagatttttagtctactacataatttgaaccggcaaactgtc

Function

symbol description
s1pr5a Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; pleuroperitoneal region; and somite. Orthologous to human S1PR5 (sphingosine-1-phosphate receptor 5).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04295 S1PR5, EDG8; sphingosine 1-phosphate receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673649.1 True 1838 mRNA 0.50 2 11744412 11750209

Neighbor

gene id symbol gene type direction distance location
LOC103045592 NA coding upstream 112512 11623683 ~ 11631900 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding upstream 122070 11606124 ~ 11622342 (+)
ankrd54 ankrd54 coding upstream 138918 11598303 ~ 11605494 (+)
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding upstream 147084 11586489 ~ 11597328 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 167572 11564449 ~ 11576840 (+)
LOC103023317 LOC108432209,LOC108260824 coding downstream 132522 11882731 ~ 11917275 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding downstream 193509 11943718 ~ 12070412 (+)
gaa LOC106601771 coding downstream 533061 12283270 ~ 12301714 (+)
LOC103031044 NA coding downstream 701694 12451903 ~ 12463253 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding downstream 718441 12468650 ~ 12471254 (+)
G9730 NA non-coding upstream 123004 11621002 ~ 11621408 (+)
G9727 NA non-coding upstream 160253 11582551 ~ 11584159 (+)
G9708 NA non-coding upstream 195281 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 238522 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 245791 11495734 ~ 11498621 (+)
G9770 spc24 non-coding downstream 4854 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 87431 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 366808 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 401696 12151905 ~ 12198169 (+)
G9856 NA non-coding downstream 473491 12223700 ~ 12224690 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 306080 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1714822 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2132600 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2813407 8919829 ~ 8931005 (+)
G9113 NA other upstream 2933945 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 552318 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 777480 12527689 ~ 12600530 (+)
G10003 NA other downstream 863482 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1024004 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1384392 13134601 ~ 13135118 (+)

Expression


Co-expression Network