gaa (LOC106601771)


Basic Information

Item Value
gene id gaa
gene name LOC106601771
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12283270 ~ 12301714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673742.1
TGCTTCCGAGTTTCCCCTGCTTTGGAATTCTCTTCCAAAAATAAGCGGCAACAAACCTGAAACAAGCCTTGTATcagttattaatatttatttatcttctgTTTGGGTTACTGTTTAAATTGGCGCTTATTTCTACAGTTATGGAAATTGACTGACTCggTTTCTCCTGCTGATCTGATATGGACTGTCCTCAGATTCATAAAAGCTCCCATAAACCTGCCAGGATCATGACTTTAAAAAACGTCTGGAACAAAAAGCTCCTGGAATAAGCATGAATCATGAATCTGTATGGGTTTCCACATCACCTTTTAACTcctgttattttaattattgcaGCATCATGTACTTTGTACATCAGTCTGCTGTATTTTCATCAAGCACCCACAATAAGACTTCCACCATTAACACAGTTAGTTAATAAGTACAGTGTCTCTGTATCTGTCCCAAATGTGAGAGTTTACACCCAGAGCAAGCCTAAAGTAAACTTCAGTAATGTTGATGTTCATGCTGGAAAGGACTGTGGTATTGCTGTGGAGAGGAGGTTTGACTGTGCTCGGGACCGAGCCCTCACTCAGTCACAGTGTGAGCAGAGGGGCTGCTGCTATGTTCCCCTGCCCAAGTCTGCATTCAGTGGTCCGCCCTGGTGTTTCTACCCTGTTTCTTATCCTGGCTACAGAATGGGACCACTTGTTCCAACTTCAAGGGGCCAGGAGGCCAACCTTACCCGCTCCACCAGTTCTTACCTTCCCCGGGACGTCCAAACACTGACACTGGAGGTGATGGCAGAGGAGGCAGGCCGCCTGCACATCGCACTGAAGGATCCATCTCAGGATCGTTATGAGGTTCCCTTCGTCGCAGTGCCTCCCACCACTCCCACAGACACTCAGAGCTTCCTCTATGATGTGGAGTTCCAGCCAGACCCTTTTGGCTTTGTTGTGCGACGTGCATCCAATGGCCGAGTACTGCTGAATACCACAGTAGCCCCCCTACTGTTTGCAGACCAGTACCTGCAGCTCTCCACCACTCTGGCCTCCTCTCTCGTGTCTGGATTTGGGGAGCACTACACTGGACTCACACTGGACCTTAACTGGACCTCTGTCACTCTGTGGAACAGAGACATGGCTCCACACAGAGATACAAATCTATATGGATCCCATCCATTTTGCTTGGTTCAGGAAGGTGATGGTCAGGCGTATGGGATCTTCCTCCTCAACAGCAATGCTATGGaagtGGTATCACAGCCTGCTCCTGCACTAACCTGGGTGACCACTGGAGGGATTATGGACTTCTACATCTTCTTAGGCCCTGATCCACAGAGTGTCGCCCAGCAGTACCATCAGGTTATTGGATATCCAATGATGCCGCCCTATTGGTCGTTGGGATTCCATCTCTGCCGCTGGGGCTACACCTCCACCAACGCTACCAGAGCTGTAGTGCAGCACATGCACCAGGCCAACTTTCCTCTAGATGTGCAGTGGAACGATCTTGATTACGCTGACAAGAGGAGAGTGTTCACCTTTGACCCGCAGAGGTTTGGAGACCTGCCTGAGATGGTGAAAGAGTTCCACAGTGAGGGAATGAAGTATGTGCTCATTTTGGACCCAGGCatcagcagcacaagccccccAGGTTCATACAAACCCTTTGACGAGGGAGAGCGGAGGGGGGTGTTCATCAGAAACCTCACAGGACAGACTCTCATCGGGAAGGTGTGGCCGGGTCCGACCGCATTCCCAGACTTCACTAACCCAGACGCAGTGAGCTGGTGGGAGGAGTGCATTGCTGACTTTTATGCCAAGGTGCCAGTGGACGGCCTGTGGATTGATATGAATGAGCCTGCTAATTTTGTTCAAGGCTCGCTGCTCGGATGCCCAGACACTGACCTGGAGAACCCTTTTTATGTTCCAGATATGATCGGAGGTCAGTTAAATGCAGGTACCCTGTGCATGTCCAGCCAGCAGTCCCTGTCTGCTCACTACAACCTGCACAACCTGTACGGGCTAACTGAGGCCATGGCCACCCACAGTGCTTTGCTGAAAGCGAGGGGTTCCCGTCCCTTCGTGTTGTCCCGGTCCTCCTTCCCTGGACTGGGTCGCTACTCAGGTCACTGGACTGGTGATGTGCACAGTGACTGGGAGCAGCTGCGATACTCCATACCTGCTGTGCTGCTGTTCGGTCTGTATGGGGTTCCTCTGGTGGGGGCGGATATTTGTGGTTTTGAAGGAGACACCAGTGAGGAGCTGTGCGTGCGCTGGACCCAGCTAGGAGCTTTCTACCCGTTCATGAGGAACCACAATGACCGATCCAATGCTCCCCAAGAGCCGTATGTGTTCGGACAGCAGGCCCAGGCAGCTATGAGGAGTGTGATGATGCTCAGATACTCTCTGCTGCCCTTCCTCTACACTCTGTTCCACCAGGCTCAAACCTCAGCCAGCACTGTGGCCAGACCCCTGTTTCTAGAATTTCCATTTGATCCAAACTGCCAGACCATAGACCAGCAGTTCCTATGGGGGAGTTCTCTCCTCATCAGTCCTGTTCTGGAGCAGGGAGCAGTGGAGCTGACAGCTTACCTCCCCCCAGGGATGTGGTACAGTCTGTATGATGGACAGCCTTACAACAGCAGGGGGCAGTACCTGCTGCTTTCTGCCCCACTAGATACCATCAACGTCCATGTGAGAGGGGGGCGCATTATTCCACAGCAGATGCCTGCTTTAACAACCACAGCCTCACGCAGTAACCCTTTCCTCCTGACGGTGGCGCTGTCCTCAGACGGCTGGGCAGTAGGGGAGCTGTTCTGGGATGATGGAGAGAGTCTGGGCACTTTTGAGCGTGGAGATTACTCCTTTATTATCTTCACTGCAGAACAGTCTCAGCTGGTGAGTGAGCCAGGAAAAGTGAATGGAGCTCTGGATGGTTTAGTTTTGGGAGAGATAAGAGTGTTTGGGGTTCTAACCCCACCTTCAGGTGTGTGGGCTAACGGCAAGGAAGTGCAGGATTACTCATACTGCACTGGCACCAAGGTTCTTACGGTGTCCAGTCTCAGCCTGCTAATGTCAGAGACGTTTAAAGTGCAGTGGAGTTCATGACAACATGAGCCTAACTTtgctgtttaaaatacttcatCATATATCAGCATTTCAATTACACAACACACATCAACAACATTCTCAGTAAATGTTTCAATTCCTGTGTTTGGATTGTTATttgaataaagtatttttttttatattcgtcttg
>XM_022673744.1
CCGACAGTCAAACAGTCGCCATCTACCAGGAGATTTAGCAAAGTAACAGACCTTCTAAAggTTTCTCCTGCTGATCTGATATGGACTGTCCTCAGATTCATAAAAGCTCCCATAAACCTGCCAGGATCATGACTTTAAAAAACGTCTGGAACAAAAAGCTCCTGGAATAAGCATGAATCATGAATCTGTATGGGTTTCCACATCACCTTTTAACTcctgttattttaattattgcaGCATCATGTACTTTGTACATCAGTCTGCTGTATTTTCATCAAGCACCCACAATAAGACTTCCACCATTAACACAGTTAGTTAATAAGTACAGTGTCTCTGTATCTGTCCCAAATGTGAGAGTTTACACCCAGAGCAAGCCTAAAGTAAACTTCAGTAATGTTGATGTTCATGCTGGAAAGGACTGTGGTATTGCTGTGGAGAGGAGGTTTGACTGTGCTCGGGACCGAGCCCTCACTCAGTCACAGTGTGAGCAGAGGGGCTGCTGCTATGTTCCCCTGCCCAAGTCTGCATTCAGTGGTCCGCCCTGGTGTTTCTACCCTGTTTCTTATCCTGGCTACAGAATGGGACCACTTGTTCCAACTTCAAGGGGCCAGGAGGCCAACCTTACCCGCTCCACCAGTTCTTACCTTCCCCGGGACGTCCAAACACTGACACTGGAGGTGATGGCAGAGGAGGCAGGCCGCCTGCACATCGCACTGAAGGATCCATCTCAGGATCGTTATGAGGTTCCCTTCGTCGCAGTGCCTCCCACCACTCCCACAGACACTCAGAGCTTCCTCTATGATGTGGAGTTCCAGCCAGACCCTTTTGGCTTTGTTGTGCGACGTGCATCCAATGGCCGAGTACTGCTGAATACCACAGTAGCCCCCCTACTGTTTGCAGACCAGTACCTGCAGCTCTCCACCACTCTGGCCTCCTCTCTCGTGTCTGGATTTGGGGAGCACTACACTGGACTCACACTGGACCTTAACTGGACCTCTGTCACTCTGTGGAACAGAGACATGGCTCCACACAGAGATACAAATCTATATGGATCCCATCCATTTTGCTTGGTTCAGGAAGGTGATGGTCAGGCGTATGGGATCTTCCTCCTCAACAGCAATGCTATGGaagtGGTATCACAGCCTGCTCCTGCACTAACCTGGGTGACCACTGGAGGGATTATGGACTTCTACATCTTCTTAGGCCCTGATCCACAGAGTGTCGCCCAGCAGTACCATCAGGTTATTGGATATCCAATGATGCCGCCCTATTGGTCGTTGGGATTCCATCTCTGCCGCTGGGGCTACACCTCCACCAACGCTACCAGAGCTGTAGTGCAGCACATGCACCAGGCCAACTTTCCTCTAGATGTGCAGTGGAACGATCTTGATTACGCTGACAAGAGGAGAGTGTTCACCTTTGACCCGCAGAGGTTTGGAGACCTGCCTGAGATGGTGAAAGAGTTCCACAGTGAGGGAATGAAGTATGTGCTCATTTTGGACCCAGGCatcagcagcacaagccccccAGGTTCATACAAACCCTTTGACGAGGGAGAGCGGAGGGGGGTGTTCATCAGAAACCTCACAGGACAGACTCTCATCGGGAAGGTGTGGCCGGGTCCGACCGCATTCCCAGACTTCACTAACCCAGACGCAGTGAGCTGGTGGGAGGAGTGCATTGCTGACTTTTATGCCAAGGTGCCAGTGGACGGCCTGTGGATTGATATGAATGAGCCTGCTAATTTTGTTCAAGGCTCGCTGCTCGGATGCCCAGACACTGACCTGGAGAACCCTTTTTATGTTCCAGATATGATCGGAGGTCAGTTAAATGCAGGTACCCTGTGCATGTCCAGCCAGCAGTCCCTGTCTGCTCACTACAACCTGCACAACCTGTACGGGCTAACTGAGGCCATGGCCACCCACAGTGCTTTGCTGAAAGCGAGGGGTTCCCGTCCCTTCGTGTTGTCCCGGTCCTCCTTCCCTGGACTGGGTCGCTACTCAGGTCACTGGACTGGTGATGTGCACAGTGACTGGGAGCAGCTGCGATACTCCATACCTGCTGTGCTGCTGTTCGGTCTGTATGGGGTTCCTCTGGTGGGGGCGGATATTTGTGGTTTTGAAGGAGACACCAGTGAGGAGCTGTGCGTGCGCTGGACCCAGCTAGGAGCTTTCTACCCGTTCATGAGGAACCACAATGACCGATCCAATGCTCCCCAAGAGCCGTATGTGTTCGGACAGCAGGCCCAGGCAGCTATGAGGAGTGTGATGATGCTCAGATACTCTCTGCTGCCCTTCCTCTACACTCTGTTCCACCAGGCTCAAACCTCAGCCAGCACTGTGGCCAGACCCCTGTTTCTAGAATTTCCATTTGATCCAAACTGCCAGACCATAGACCAGCAGTTCCTATGGGGGAGTTCTCTCCTCATCAGTCCTGTTCTGGAGCAGGGAGCAGTGGAGCTGACAGCTTACCTCCCCCCAGGGATGTGGTACAGTCTGTATGATGGACAGCCTTACAACAGCAGGGGGCAGTACCTGCTGCTTTCTGCCCCACTAGATACCATCAACGTCCATGTGAGAGGGGGGCGCATTATTCCACAGCAGATGCCTGCTTTAACAACCACAGCCTCACGCAGTAACCCTTTCCTCCTGACGGTGGCGCTGTCCTCAGACGGCTGGGCAGTAGGGGAGCTGTTCTGGGATGATGGAGAGAGTCTGGGCACTTTTGAGCGTGGAGATTACTCCTTTATTATCTTCACTGCAGAACAGTCTCAGCTGGTGAGTGAGCCAGGAAAAGTGAATGGAGCTCTGGATGGTTTAGTTTTGGGAGAGATAAGAGTGTTTGGGGTTCTAACCCCACCTTCAGGTGTGTGGGCTAACGGCAAGGAAGTGCAGGATTACTCATACTGCACTGGCACCAAGGTTCTTACGGTGTCCAGTCTCAGCCTGCTAATGTCAGAGACGTTTAAAGTGCAGTGGAGTTCATGACAACATGAGCCTAACTTtgctgtttaaaatacttcatCATATATCAGCATTTCAATTACACAACACACATCAACAACATTCTCAGTAAATGTTTCAATTCCTGTGTTTGGATTGTTATttgaataaagtatttttttttatattcgtcttg

Function

NR:

description
PREDICTED: lysosomal alpha-glucosidase

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K12316 GAA; lysosomal alpha-glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673742.1 True 3237 mRNA 0.50 20 12283996 12301714
XM_022673744.1 False 3138 mRNA 0.51 20 12283270 12301714

Neighbor

gene id symbol gene type direction distance location
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding upstream 212858 11943718 ~ 12070412 (+)
LOC103023317 LOC108432209,LOC108260824 coding upstream 365995 11882731 ~ 11917275 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding upstream 533061 11744412 ~ 11750209 (+)
LOC103045592 NA coding upstream 651370 11623683 ~ 11631900 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding upstream 660928 11606124 ~ 11622342 (+)
LOC103031044 NA coding downstream 150189 12451903 ~ 12463253 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding downstream 166936 12468650 ~ 12471254 (+)
LOC111188181 LOC108432168 coding downstream 172503 12474217 ~ 12484578 (+)
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 594182 12895896 ~ 13001095 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding downstream 1800152 14101866 ~ 14112197 (+)
G9870 tnpo2,LOC108432206,LOC105910653,LOC106601762 non-coding upstream 2930 12277539 ~ 12280340 (+)
G9868 tnpo2,LOC104950577,LOC103360699,LOC108432206 non-coding upstream 6458 12274840 ~ 12276812 (+)
G9861 tnpo2,LOC108432206 non-coding upstream 10349 12265778 ~ 12272921 (+)
G9856 NA non-coding upstream 58580 12223700 ~ 12224690 (+)
G9852 NA non-coding upstream 85101 12151905 ~ 12198169 (+)
G9918 NA non-coding downstream 42906 12344620 ~ 12348777 (+)
G9999 NA non-coding downstream 284374 12586088 ~ 12589528 (+)
LOC111193353 NA non-coding downstream 294683 12596397 ~ 12597719 (+)
G10001 slc5a11,LOC107670676,LOC107728787 non-coding downstream 307251 12608965 ~ 12610876 (+)
G10010 NA non-coding downstream 355891 12657605 ~ 12658147 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 844938 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 2253680 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2671458 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 3352265 8919829 ~ 8931005 (+)
G9113 NA other upstream 3472803 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 813 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 225975 12527689 ~ 12600530 (+)
G10003 NA other downstream 311977 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 472499 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 832887 13134601 ~ 13135118 (+)

Expression


Co-expression Network