emc10 (emc10,LOC107551156,LOC107729566,LOC107687623)


Basic Information

Item Value
gene id emc10
gene name emc10,LOC107551156,LOC107729566,LOC107687623
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12876778 ~ 12888981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673927.1
GCTTCCTTGTCTGTGGTTGCACGCTTCCTGTGCACCGTCCGGACAAAATGGCTCCGCTCAGCTCCTCTTTTATTGCGATCGTTTTTGTGAATATTGTCGGGTTTTACACGCAGTATGGAGACTGTAATAATGGCAGGAGGGTACCAGAAACCATAGAGTCAGACCTCACCGGGTTTTCTGTACCACTGGAGCACTCTTTTGAAGTGGATGATGTGCCGAGGTTCTGGGTTCGTGGAAACATCCAGCTGAAGGCTGGCAGAGAGAAcaatgtctttctctctcaggcgATGCTCTCGGAGAAGGACAGGAGTGTACTTAAGGATGTGGCAGCAGTGGATGGGCTGTATAGGATCAGAATTCCCAGAGTTTCTCTGCAGGctgacagacagacggacagacagtTAGAGGGCTACCTCACCGCCTTTGTCAGAGCTTGCTCCCTTGTTGAATCCCACCTCAGTGATGTCATCACTTTACACACGGACGTCAGTGGCTTCGTCATAGGCGTGTCTATAGTGACTATGCCAGGTGCCTGTAGGGGAGCAGAGGTTGAGGATGAGGTTGATCTGGAAGTCTTTAACACAACCATCAGTGTAATGGCACCAGTCAATGCACCAGCccCAGAGACggcactgtttattgaaaggaTGGAACAAGAAATGGACAAAAAGGGAAAACCCCAGGAGCAGAAATCTTTCTTTGCCAAATATTGGATGTACATTGTGCCCCTCGTCCTTTTCCTCATGATGTCAGGAGCTCAGGATCAGTCTGGAGGCGGAGCTGGTGGTGGCTCAGGCAATGGCGGTGGACGATGATTTCTGTGGCAGCAGGGTCTGTTCGTTGGCAGTCATGTAGTTGtacataataatttaaacaattgAAATTAACATTAACTTAACGCATGCACATATGTGCCGTTCATGTGCATTTATGAACTGATTAAGAACTGATGTTGAAAGATTAATGTAGACTAGTGCTGCTGGTCTGTGTTTTTACTACTGATTTATTGAATAAAATCTGTTGTAAATGATACCTCTACTCTA
>XM_022673934.1
GCTTCCTTGTCTGTGGTTGCACGCTTCCTGTGCACCGTCCGGACAAAATGGCTCCGCTCAGCTCCTCTTTTATTGCGATCGTTTTTGTGAATATTGTCGGGTTTTACACGCAGTATGGAGACTGTAATAATGGCAGGAGGGTACCAGAAACCATAGAGTCAGACCTCACCGGGTTTTCTGTACCACTGGAGCACTCTTTTGAAGTGGATGATGTGCCGAGGTTCTGGGTTCGTGGAAACATCCAGCTGAAGGCTGGCAGAGAGAAcaatgtctttctctctcaggcgATGCTCTCGGAGAAGGACAGGAGTGTACTTAAGGATGTGGCAGCAGTGGATGGGCTGTATAGGATCAGAATTCCCAGAGTTTCTCTGCAGGctgacagacagacggacagacagtTAGAGGGCTACCTCACCGCCTTTGTCAGAGCTTGCTCCCTTGTTGAATCCCACCTCAGTGATGTCATCACTTTACACACGGACGTCAGTGGCTTCGTCATAGGCGTGTCTATAGTGACTATGCCAGGTGCCTGTAGGGGAGCAGAGGTTGAGGATGAGGTTGATCTGGAAGTCTTTAACACAACCATCAGTGTAATGGCACCAGTCAATGCACCAGCccCAGAGACggcactgtttattgaaaggaTGGAACAAGAAATGGACAAAAAGGGAAAACCCCAGGAGCAGAAATCTTTCTTTGCCAAATATTGGTATTTGATTCTGGGAGGTGCAGTGTTCCTCATGGCCACCAGTTCAGCACAGCCCCCAGCAGGGGGCGGCAGAGAGCAGAGCTGAAACCCATGCATTTCAATGGATGTACATTGTGCCCCTCGTCCTTTTCCTCATGATGTCAGGAGCTCAGGATCAGTCTGGAGGCGGAGCTGGTGGTGGCTCAGGCAATGGCGGTGGACGATGATTTCTGTGGCAGCAGGGTCTGTTCGTTGGCAGTCATGTAGTTGtacataataatttaaacaattgAAATTAACATTAACTTAACGCATGCACATATGTGCCGTTCATGTGCATTTATGAACTGATTAAGAACTGATGTTGAAAGATTAATGTAGACTAGTGCTGCTGGTCTGTGTTTTTACTACTGATTTATTGAATAAAATCTGTTGTAAATGATACCTCTACTCTA
>XM_022673938.1
agctaataaaaaaaagaaatcagattagtcgactaccaaaataatccttagttgcagccctatttgcAATATAGTGAACAACTAACGTCCTTTTATTTGTGGTGCTCTGAGGACGTCTGACAAAACACCACCTCACTGCACTATGGTACCAGAAACCATAGAGTCAGACCTCACCGGGTTTTCTGTACCACTGGAGCACTCTTTTGAAGTGGATGATGTGCCGAGGTTCTGGGTTCGTGGAAACATCCAGCTGAAGGCTGGCAGAGAGAAcaatgtctttctctctcaggcgATGCTCTCGGAGAAGGACAGGAGTGTACTTAAGGATGTGGCAGCAGTGGATGGGCTGTATAGGATCAGAATTCCCAGAGTTTCTCTGCAGGctgacagacagacggacagacagtTAGAGGGCTACCTCACCGCCTTTGTCAGAGCTTGCTCCCTTGTTGAATCCCACCTCAGTGATGTCATCACTTTACACACGGACGTCAGTGGCTTCGTCATAGGCGTGTCTATAGTGACTATGCCAGGTGCCTGTAGGGGAGCAGAGGTTGAGGATGAGGTTGATCTGGAAGTCTTTAACACAACCATCAGTGTAATGGCACCAGTCAATGCACCAGCccCAGAGACggcactgtttattgaaaggaTGGAACAAGAAATGGACAAAAAGGGAAAACCCCAGGAGCAGAAATCTTTCTTTGCCAAATATTGGATGTACATTGTGCCCCTCGTCCTTTTCCTCATGATGTCAGGAGCTCAGGATCAGTCTGGAGGCGGAGCTGGTGGTGGCTCAGGCAATGGCGGTGGACGATGATTTCTGTGGCAGCAGGGTCTGTTCGTTGGCAGTCATGTAGTTGtacataataatttaaacaattgAAATTAACATTAACTTAACGCATGCACATATGTGCCGTTCATGTGCATTTATGAACTGATTAAGAACTGATGTTGAAAGATTAATGTAGACTAGTGCTGCTGGTCTGTGTTTTTACTACTGATTTATTGAATAAAATCTGTTGTAAATGATACCTCTACTCTA

Function

symbol description
emc10 Predicted to contribute to membrane insertase activity. Predicted to be involved in protein insertion into ER membrane by stop-transfer membrane-anchor sequence and tail-anchored membrane protein insertion into ER membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC10 (ER membrane protein complex subunit 10).

NR:

description
PREDICTED: ER membrane protein complex subunit 10-like isoform X2

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23570 EMC10; ER membrane protein complex subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673927.1 False 1043 mRNA 0.47 7 12876778 12888981
XM_022673934.1 True 1146 mRNA 0.48 8 12876778 12888981
XM_022673938.1 False 1048 mRNA 0.45 7 12876778 12888285

Neighbor

gene id symbol gene type direction distance location
LOC111193363 LOC108434907 coding downstream 12003 12826988 ~ 12864775 (-)
tbc1d17 tbc1d17,LOC107687627,LOC107729504,LOC107680857,LOC107551157,LOC107563983 coding downstream 69864 12778323 ~ 12806914 (-)
LOC111193357 LOC108434909 coding downstream 109147 12761269 ~ 12767631 (-)
LOC103046537 nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981 coding downstream 117108 12742351 ~ 12759670 (-)
LOC103033800 ppfia3,LOC108415507,LOC107687647,LOC107551161,LOC107563979,LOC107729434 coding downstream 161064 12674209 ~ 12715714 (-)
LOC111193378 NA coding upstream 204222 13093203 ~ 13096456 (-)
med25 med25 coding upstream 449020 13338001 ~ 13387939 (-)
syt3 syt3,LOC107551154,LOC107563990 coding upstream 535045 13424026 ~ 13540925 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding upstream 742798 13631779 ~ 13671682 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding upstream 794898 13683879 ~ 13964838 (-)
G10102 NA non-coding downstream 9069 12867428 ~ 12867709 (-)
G10036 NA non-coding downstream 209890 12665872 ~ 12666888 (-)
G10013 NA non-coding downstream 277202 12595671 ~ 12599576 (-)
G10015 LOC108432202 non-coding downstream 304433 12545194 ~ 12572345 (-)
G9937 NA non-coding downstream 470605 12346516 ~ 12406173 (-)
G10122 NA non-coding upstream 5855 12894836 ~ 12895286 (-)
G10129 mybpc2a,LOC107551135,LOC107729557 non-coding upstream 108993 12997974 ~ 13001256 (-)
G10130 NA non-coding upstream 112419 13001400 ~ 13002570 (-)
G10137 NA non-coding upstream 116163 13005144 ~ 13008412 (-)
LOC111194169 NA non-coding upstream 124356 13013337 ~ 13017476 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 59592 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1198670 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 1532516 11340140 ~ 11344262 (-)
G9469 NA other downstream 2481298 10393462 ~ 10395480 (-)
LOC111194270 NA other downstream 2651288 10221156 ~ 10225490 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 260376 13149357 ~ 13292878 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 1149877 14038858 ~ 14083107 (-)
G10560 NA other upstream 1352080 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 1730395 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 1899089 14788070 ~ 14797643 (-)

Expression


Co-expression Network