LOC111193378


Basic Information

Item Value
gene id LOC111193378
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 13093203 ~ 13096456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673974.1
taaaaatgataaatagtaactttgctttttttattttatttctagttGTTTTTAAATGGAGCTTCCCTAGAATAATTATTATTCTAAGTACTGTCAGACTCCATGTGGTTTATGATCGGGATCAGATATTAGGAAAACTTCTCAACACTTCAGGGGATTTCACAGAATTATAGTTTTTTAGGTTGCTTTGCCTCTTAATaggaaaatattgatgtattattttgtattataaaataatatgtatttatgttctTTTTAAAGATGGCACCCAAAAGAAAGAAGACAAATgTCTGCAGTACTCAGACAACCAAACAAAAGAAGAGCAGGGTCTCCTGTAATAGACAAGCTCAATCTAATTCATCTACTGCTGTCCAACCAAGTCAACATTCTCAGCTCTTTCTCACCTCTCATAATATCCTTCCTACAGTTCCACCTATATGTCAGACTACCCTACCCTCTGCTACATGCCAAACTTCTCCATCCATGTCATGCATTCAGACTACTCCACCATCTACATCACTTCATGCTGCTCCTAGCACACCTACTCCACAGATTATCCCATTCACAGCTACCTGTCAGACCACTCCCAACCCGTCACAGCCTACCCCTTCCATATCTACTGCTCAAACTGGCCCACCTACTTCCACATCTCAGACTAACACTTCTGTATATACAACTCAGATCAACTTGTCTTCCACAAGCTCTCAGACCCGTCCAGTACCTCATAGTAATATCAGTTTCCAAGAAGTAGAAAGTGTTTTAACACTTTCATTTGGTCGAAGACAGAAAAGATACCAAGTGACAGTGGACGAGTTGAGACGAAGAGTTGGGGCCCCGGAAAATATGTCTGCAAATACCCTCGTCTCCTACCTTCGTGTTGATAAGAACAAGAAACAGGAGTTGAAACAAAGGCTTCAAAATGCGGGTGTCAGCCCTGGACCTTTAACAAGTGTGGTGTCAATGTGCTCAAAATTAACTGAggCTGAAGCTTGTGAGCTGGCAGACAGCTTGGGGAAGATGGCAGCAGCTTACATTCCAGATGACATTCAACTCATGGAGTTAGCCAACAAGGATGTTGCACTGGGGAGACTTGCTTTTTTCAAagaccttCTAAACGAAGCCAAAACCCAGCTGCATCAGCATGCAAGAGCCTTTGACTTAGTTACTCATGGCCTTGGCCTAAAATTATTCGATGTTTTCTTTTCAGTCCTGGGAAAGGTGGCAGACTCAGAGATCAGAAAGTATAGTGCTGCAGAATAAGACTTAGTCCAAACCAA
>XM_022673978.1
GAGGCTTTTAAGCCCTGAACGACGTCTCACAGGCTGCAGTGCCTCCAAGGCTGCAGCCCGCCTCTACCAGCTAAACCAATCAAATAACAGGAAACTGGAATCCCGCCCCATGAGaacacagccaatcagattaaATCAAGGAATTTCGAGCGCGCAGtttcactttattttctttttttcagtgagCTAGCACAGTATAACTGCTACATTTTGGATTTTTGGAAAGGCTGCTGGTCTGTGTTTCTACAGTCAACCACTTATGGCACCCAAAAGAAAGAAGACAAATgTCTGCAGTACTCAGACAACCAAACAAAAGAAGAGCAGGGTCTCCTGTAATAGACAAGCTCAATCTAATTCATCTACTGCTGTCCAACCAAGTCAACATTCTCAGCTCTTTCTCACCTCTCATAATATCCTTCCTACAGTTCCACCTATATGTCAGACTACCCTACCCTCTGCTACATGCCAAACTTCTCCATCCATGTCATGCATTCAGACTACTCCACCATCTACATCACTTCATGCTGCTCCTAGCACACCTACTCCACAGATTATCCCATTCACAGCTACCTGTCAGACCACTCCCAACCCGTCACAGCCTACCCCTTCCATATCTACTGCTCAAACTGGCCCACCTACTTCCACATCTCAGACTAACACTTCTGTATATACAACTCAGATCAACTTGTCTTCCACAAGCTCTCAGACCCGTCCAGTACCTCATAGTAATATCAGTTTCCAAGAAGTAGAAAGTGTTTTAACACTTTCATTTGGTCGAAGACAGAAAAGATACCAAGTGACAGTGGACGAGTTGAGACGAAGAGTTGGGGCCCCGGAAAATATGTCTGCAAATACCCTCGTCTCCTACCTTCGTGTTGATAAGAACAAGAAACAGGAGTTGAAACAAAGGCTTCAAAATGCGGGTGTCAGCCCTGGACCTTTAACAAGTGTGGTGTCAATGTGCTCAAAATTAACTGAggCTGAAGCTTGTGAGCTGGCAGACAGCTTGGGGAAGATGGCAGCAGCTTACATTCCAGATGACATTCAACTCATGGAGTTAGCCAACAAGGATGTTGCACTGGGGAGACTTGCTTTTTTCAAagaccttCTAAACGAAGCCAAAACCCAGCTGCATCAGCATGCAAGAGCCTTTGACTTAGTTACTCATGGCCTTGGCCTAAAATTATTCGATGTTTTCTTTTCAGTCCTGGGAAAGGTGGCAGACTCAGAGATCAGAAAGTATAGTGCTGCAGAATAAGACTTAGTCCAAACCAA
>XM_022673985.1
GAGGCTTTTAAGCCCTGAACGACGTCTCACAGGCTGCAGTGCCTCCAAGGCTGCAGCCCGCCTCTACCAGCTAAACCAATCAAATAACAGGAAACTGGAATCCCGCCCCATGAGaacacagccaatcagattaaATCAAGGAATTTCGAGCGCGCAGtttcactttattttctttttttcagtgagCTAGCACAGTATAACTGCTACATTTTGGATTTTTGGAAAGGCTGCTGGTCTGTGTTTCTACAGTCAACCACTTATGGCACCCAAAAGAAAGAAGACAAATgATACCAAGTGACAGTGGACGAGTTGAGACGAAGAGTTGGGGCCCCGGAAAATATGTCTGCAAATACCCTCGTCTCCTACCTTCGTGTTGATAAGAACAAGAAACAGGAGTTGAAACAAAGGCTTCAAAATGCGGGTGTCAGCCCTGGACCTTTAACAAGTGTGGTGTCAATGTGCTCAAAATTAACTGAggCTGAAGCTTGTGAGCTGGCAGACAGCTTGGGGAAGATGGCAGCAGCTTACATTCCAGATGACATTCAACTCATGGAGTTAGCCAACAAGGATGTTGCACTGGGGAGACTTGCTTTTTTCAAagaccttCTAAACGAAGCCAAAACCCAGCTGCATCAGCATGCAAGAGCCTTTGACTTAGTTACTCATGGCCTTGGCCTAAAATTATTCGATGTTTTCTTTTCAGTCCTGGGAAAGGTGGCAGACTCAGAGATCAGAAAGTATAGTGCTGCAGAATAAGACTTAGTCCAAACCAA

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673974.1 True 1277 mRNA 0.41 5 13093203 13095173
XM_022673978.1 False 1275 mRNA 0.45 6 13093203 13096456
XM_022673985.1 False 773 mRNA 0.45 5 13093203 13096456

Neighbor

gene id symbol gene type direction distance location
emc10 emc10,LOC107551156,LOC107729566,LOC107687623 coding downstream 204222 12876778 ~ 12888981 (-)
LOC111193363 LOC108434907 coding downstream 228428 12826988 ~ 12864775 (-)
tbc1d17 tbc1d17,LOC107687627,LOC107729504,LOC107680857,LOC107551157,LOC107563983 coding downstream 286289 12778323 ~ 12806914 (-)
LOC111193357 LOC108434909 coding downstream 325572 12761269 ~ 12767631 (-)
LOC103046537 nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981 coding downstream 333533 12742351 ~ 12759670 (-)
med25 med25 coding upstream 241545 13338001 ~ 13387939 (-)
syt3 syt3,LOC107551154,LOC107563990 coding upstream 327570 13424026 ~ 13540925 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding upstream 535323 13631779 ~ 13671682 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding upstream 587423 13683879 ~ 13964838 (-)
LOC103035240 LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063 coding upstream 1021135 14117591 ~ 14148282 (-)
G10157 NA non-coding downstream 25464 13067121 ~ 13067739 (-)
G10153 NA non-coding downstream 33825 13059122 ~ 13059378 (-)
G10151 NA non-coding downstream 34157 13058775 ~ 13059046 (-)
G10145 NA non-coding downstream 47564 13045428 ~ 13045639 (-)
G10142 NA non-coding downstream 55105 13029625 ~ 13038098 (-)
G10182 NA non-coding upstream 10802 13107258 ~ 13107512 (-)
G10184 NA non-coding upstream 13637 13110093 ~ 13110294 (-)
G10189 NA non-coding upstream 21532 13117988 ~ 13118231 (-)
G10191 NA non-coding upstream 24363 13120819 ~ 13121074 (-)
G10232 NA non-coding upstream 116101 13212557 ~ 13213158 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 276017 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1415095 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 1748941 11340140 ~ 11344262 (-)
G9469 NA other downstream 2697723 10393462 ~ 10395480 (-)
LOC111194270 NA other downstream 2867713 10221156 ~ 10225490 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 52901 13149357 ~ 13292878 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 942402 14038858 ~ 14083107 (-)
G10560 NA other upstream 1144605 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 1522920 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 1691614 14788070 ~ 14797643 (-)

Expression


Co-expression Network