syt3 (syt3,LOC107551154,LOC107563990)


Basic Information

Item Value
gene id syt3
gene name syt3,LOC107551154,LOC107563990
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 13424026 ~ 13540925 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674037.1
cTGTGAAGGCAGgggaaaacagagagaggagaaacagaGGGGAGcagagtgcgagagagaaagagagagggggagagagaaaaaaaagaggctaCCTCTACCATCCCTTTCCTCCCTCTCACATCCTGTAGCATCCCTCCATCCCAGgcAATGTCAAACATCCCTTCCAATCTGAGGGTGAATCACAAACCACATTAAAGACTGAATGGAAAAAACCCAGAAGAGCCGCTGCAGCCCACGGCGTCCCGCAGGAACTACATAACCCACAATTCAACTCTCCGACTGCTCTGACTTTGTTTTAAGGaccaaacctttaaaaaaagacaaacagacgctttaaaaaaaaaaaaaaaaaaaacacccatgtGTCATCTTTTCTGAGTTGGCTTCTTTGACCGTCTCACCATGACAAGAACTGTGGGGCCTCCAGAACGTcttttatgaaaaagaaaaccagccaataaaaaagaaaagcatgtGAAAGAAAACAAGTGTCTGCAATCACAGCTGAACTCCCTTTCTTCTAGATCCAGATCGCTTCGCCCAGGAGGACGGATATGGCTCGCAAATCTTTAGACGTAAAAGCCATTAAAAGCTCTAATTAAATAAGTGGTCCAAAAGaccacaagagagagagagagagacccctGAACTCCCCGTTGGCCCCCATTGGTTCCTCAGAAATCTATAAACGAGGCATCTCCTCTGATTGGGTCCCTGAGGGAACTGAAtcgggaaagagagaaaaaaaaaaaggcccacCCTCTCCACCGTGCAAGATTTTGGGGGGTTTTGGAGTGCGATGCGGATTGGAGGATGTCGGGGGACTGGGATGAAGACATGTGCAAGAAGGCGCTGGTGCTGGTGGAGGAGCTGTGCTTCCGCTCCGGAGGATACAGCCAGAGCGCCAGCTGCCAGGAGTTCAGCTACATGATGAGGGGGCGCAACAGCCAGATAGACTCAGagatcTCCGTCAGTCTCCTCTCCGTTATCGTGACGTTCTGTGGAATCGTCCtcctctccgtctctctcttcgTCTCCTGGAAGCTGTGCTGGTTGCCATGGCGAGACAAAGAAGGTGGAGGTTTGAGTCTGACGGCGGGGCTCCTTCCTGGAGGAGCGAGTCTCACCGGGCTtggagggggcggagcttcaTCACTCCTGCCCCCACTGCTGCAGAGGAAGGACACGCACTCGTCTTCCTCTTTGTATCCCTCACTCGCCCAGCCTGGCCAGCACCACCCCCACTTCCCCGACATGATgggggtggagggtggaggggGGCTGGTGGTCGGGGGAGTGGTGGGGGGTCCTCAGGAGACACAGGAACACTCCTACCTGGACATGGACTCATACCCCAACAATGCAGGGACTCTTAAGCTGAGCCAGACGTCTCCTGAACTTCCTCCAGGAACAGACGGAGGCCCTGCTGCTGCCAAAGAGATTGCTAATGCCCACTCTCAGCCGACCACCACAACCAgGCCCAAGCCCATGACTCATCAGCTCTCCAGTCCAGATTTCCATGGTGAGGAGAAGAGTGAGCAGGTGACCAGCATTGGCCAGATCAAACCAGAACTGTACAGACTGCGACAGGGCGAGCAGGGCGACGGGAAGCAAGGCGACACCTGCGGCAAAATCAGCTTCCTCCTGCGCTATGCCTTCAACACGGAGCAGCTGGTGGTCAAAATCCTCAAAGCTCTGGACCTGCCGGCCAAAGACGCCAACGGTTTCTCTGACCCGTACGTCAAAATCTACCTGCTGCCTGACAGGAAGAAGAAATATCAGACCAAGgtcCACAGGAAGACTCTGAACCCTGTGTTTAATGAGACGTTTCAGTTTGGCGTGCCGCTGGCCGAGCTGCACTCGAGGAAGCTGCATTTCTCCGTCTACGACTTCGACCGCTTCTCCAGACACGACCTCATCGGCCAGGTGGTGGTGGACAACCTGCTGGACTTCAGCGAGGGCACCGGCGAGAAACCCATCTGGAGGGATATTGTGGAAGGGACGGCGGAAAAAGCTGACCTGGGGGAGTTGAATTTCTCACTGTGTTACTTGCCAACAGCTGGCCGACTGACTGTCACTATCATCAAGGCCACCAACCTCAAAGCCATGGACCTGACAGGCTTCTCagACCCGTACGTGAAGGCGTCTCTGGTTTGCGAGGGTCGCAGGCTGAAGAAGAGGAAAACCTCCATTAAGAAGAACACACTGAACCCCACCTACAACGAAGCTCTAGTCTTCGACATCCCTAACGAAAACATCGAGAGTGTGTCCCTGATCATCGCCGTCATGGACTACGACTGtATTGGCCATAACGAGGTGATTGGGATGTGTTGTGTGGGCAGTGACGCTGAAGGGCCGGGCAGAGAGCACTGGACAGCCATGCTGGCCAATCCACGCAAACCCATTGAACACTGGCACCAACTGGTGGAGGAGAAATCTATTACCACGTATTCGAAGAGCGCCACAGCCTCACCGAAGCCACACATCGTGGTGGACAGTCCACACTCCGAATAGAGATGTCAGCATAATGTTTCTAGCGCCAGACGTTCATTCCTTCTTCTCatctgtgaataaataaatctctccatcGAAATGAGACGGAAGCGGCGGAGGAAAGACACTGCTAGCTAACTGTTCGCTAACTACAGACCCACCACACACAGTGTAGAGACCACTCTGAGTAGAATAGACAACAACAcggaacacacacatacacatacacccTTACACCAACCAGCCATTTCATTAAAACCACCTCATTGTTTCTACTCTACACTCTAAGTCCATTTGATCAGGTGCACTTACTTTATGGAAGCACTTACATTATGGTAGTTCCATAATAACAAAATGTAGTTCCACACTTTAGTGTCAATCTTGGGCTGAGAATAGTATaacaaccagaaatatccagccaaaaCATCCTGTAACCAATAATGGTCTAGAGGACTGGAGAATGACCAACACTAACTGTCCAGCAACAGATCCAGAGCTGCTGTCTCTGACTTTCTATTTAATAGATGGGATTCTATCTGAGTGAATGGGCATTGTGTTTAAAACcgccagcagcactgctgcatctaaTCCACACAATGCTGAGAATgttccaccacccaaataatagacTACTGTGAAgttctgaccattgaagaaAGGAGGATAGTATGcaatatgcagagaaac

Function

symbol description
syt3 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT3 (synaptotagmin 3).

NR:

description
PREDICTED: synaptotagmin-3

GO: NA

KEGG:

id description
K19903 SYT3; synaptotagmin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674037.1 True 3183 mRNA 0.51 12 13424026 13540925

Neighbor

gene id symbol gene type direction distance location
med25 med25 coding downstream 36087 13338001 ~ 13387939 (-)
LOC111193378 NA coding downstream 327570 13093203 ~ 13096456 (-)
emc10 emc10,LOC107551156,LOC107729566,LOC107687623 coding downstream 535045 12876778 ~ 12888981 (-)
LOC111193363 LOC108434907 coding downstream 559251 12826988 ~ 12864775 (-)
tbc1d17 tbc1d17,LOC107687627,LOC107729504,LOC107680857,LOC107551157,LOC107563983 coding downstream 617112 12778323 ~ 12806914 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding upstream 90854 13631779 ~ 13671682 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding upstream 142954 13683879 ~ 13964838 (-)
LOC103035240 LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063 coding upstream 576666 14117591 ~ 14148282 (-)
LOC103035550 paqr4,paqr4a,LOC105897660,LOC106601588 coding upstream 625515 14166440 ~ 14197240 (-)
LOC103039514 LOC108427305 coding upstream 707749 14248674 ~ 14292162 (-)
G10284 NA non-coding downstream 15420 13399883 ~ 13408606 (-)
G10232 NA non-coding downstream 210868 13212557 ~ 13213158 (-)
G10191 NA non-coding downstream 302952 13120819 ~ 13121074 (-)
G10189 NA non-coding downstream 305795 13117988 ~ 13118231 (-)
G10184 NA non-coding downstream 313732 13110093 ~ 13110294 (-)
G10302 NA non-coding upstream 43442 13584367 ~ 13584612 (-)
G10303 NA non-coding upstream 44525 13585450 ~ 13585919 (-)
G10379 NA non-coding upstream 133030 13673955 ~ 13675293 (-)
G10413 NA non-coding upstream 376199 13917124 ~ 13917838 (-)
G10429 NA non-coding upstream 469251 14010176 ~ 14010413 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 131148 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 606840 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1745918 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 2079764 11340140 ~ 11344262 (-)
G9469 NA other downstream 3028546 10393462 ~ 10395480 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 497933 14038858 ~ 14083107 (-)
G10560 NA other upstream 700136 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 1078451 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 1247145 14788070 ~ 14797643 (-)
G10767 NA other upstream 1382040 14922965 ~ 14923959 (-)

Expression


Co-expression Network