LOC111193418


Basic Information

Item Value
gene id LOC111193418
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14331002 ~ 14333447 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674133.1
atttcatttgaTATAAAGTGATATAGGTGATAAAGGGTTAAAACAGATATAAGtcatattaaacaaacaagagataatcCTAGCtgtcttaaataataataaccaattaCATCTAAAACCAAGATAATTAATACATCCTAAACtataataatttgattaattaagcaTAATTGagtacaataattataataataataataacaataataattaatttaaataaactaaccAAGTTATATAAAATTACAACCGAGGTTAAACCCAAacctaaataatttaaaataaataaactctgagTCAAACTTGAGTATTTTTTTGAGTATATTTGGGAAAATCTGTAAAGGAAACAGGTGaaataagtgtttaaaaatctatctgtttaatttgtttattactgtatcttctctgtattttttgtaCACTGATTTTTCCATCACGGCATTTTGTCAGTAAAGTGGGCTTTTACTTTTCAACCTCACCTTTGTCTCCTGTGTATGCTGTCACACACCTACCACCTCCCCTCGAATCTAGTTATACTGGTCTATAGCCTTATTGCAGCTTTCGTATATTCATTGAACCATCCAATTTATAGGTTTGTGGTAACCAGCTACATTGCTGATGGTAAAGCAGTTGCTGCTCTAGTTTACTACTGCAAATAGGTGCTACATTGTGGCGAGCCAGCCAGGAGGTGGCGCTGTTGACAGCATCTCaggtatttttatttcattatcacTAAACAAATACGGGTTTAACAAATGGAGGTTGTACAAGAAAAAAACGTAACTGTATTAAATTCCCTTTTAATTAGTGGCCTAACTTACACAAAAATAGATGAAGAGCTTTTTGAGTACTTGGGAAAGTACGGATCTGTAGCTAGATTAATACCTATTGAAACTCCAGGGTCTGATTGCAGTGGACAAGCAATACTAGAGTACAGTTACAGTACTGCTACTAAGGCAATAGAATCATTACTGCCCCTAGAGTTCAAGAGCACATCCAGTCCTGAGATAGTTTTCCATGTAAGAGCCCTTTCCAGTGCTTACCCATTCGAGGCCAGTGATGAAGCAACCCAGTCACACCATAAAGAGCTACAGAGTACTGCCCAGCTGAGTGGCAGGGGTCTAACAGCACTACTGCATGAAGTGCTACTCAAGACAAGCAAGCCTGTGTCTCAGGTGATTAGTGGCAACAGCCTTGAAGTCAACAGTGAAGATGATAATGGGCCCTTTGTTAGTGTGGATCACCATGACCAACTTACCCCTGTTCGTTCACCTCAAGCAAGTTATTCTGTAAAAGGTAGTCCTGTGAAAACCACTGTAAGGCTTTCCACAAACAGTAAAGAGAATGAGTTTCATTCAAACCCTTCCAACATCTACCCTCCAGAGGTGCAAAGAGTGGTAGTGGAGCACGTAGTGAGAGCTGGAGAGGTTGCATCACATCCATATGGTCAAAGCAGGCTCAGAGCTTTCTCTGGAAGAGTTCCATGTCCTTCCAACGAGGTCGATTATGATGCCTGGAGAACGAATGTCGAACTCTTACTTCAAGACCCTTCTGTTTCAGACCTGGACCGATCCAGAAAGATTATTGACAGTCTTTACCCACCAGCATCAACAGTCATCAAATCATTAGGTCCTTCTGCATTGCCCAAAGCTTATTTGGAGTTGCTTGATTCTGCTTTTGGAACAGTCGCAGATGGAGATGAGCTCTTTGCTCAGTTCCTAAACACATTCCAGGATGCTGGAGAAAAACCCTCATCTTACCTGCACAGACTTCAAGTGGCCTTGATGAAAGCTACCAAAAGAGGAGGAAACACTGTCACAACTTGTGAAAGCCAGCTTCTGAAACAGTTCTGTCGGGGATGTTGGGATCAATCTCTTCTCATTGAGCTGCAGTTAAGGCAAAGACGAGAGAACCCCCCTTCTTTTCCAGAATTTCTTTTAATGCTGCGCTCAGAGGAAGACAAACAAGCAGCCAAAGCCCACCGTATGAGACAGCATCTAGGTATGCCCAAGTCCAGAGTAGCAACCAATGCACAGGTAGTCTCTACTGAATCATCTAGTGACAGCTATTCATTCAGTAACACTGATCTTTCAGCTGAAACCCAAAAGTTAAAAGAACAAGTCGCACAACTGCAAGCCCAGTTGGCTAGATTAACTCCTTCCAACACCAACAAGCAGAAGAAACCTTTCAGTAAGTTTAGACAATCCAATGGTACcaacaccaaaccaaaccctTTTAAGTCTGCTGATACTGACCTGAAGTCCACAGCGAAGCCCAGACCAGGGTATTGTTTCCTATGTGGGGAGGATGGACATGTGGCTAGTTCTTGTGAAAACGAGGCGAACCCAGCTTTAGTACAAGCAAAAAGAAGAGAGCTCAAAGCAAAACAGCAGCAATgggaagaacagcacaagacacatttaaactaaATGCAGTCTCTGTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674133.1 True 2446 mRNA 0.40 1 14331002 14333447

Neighbor

gene id symbol gene type direction distance location
LOC103039514 LOC108427305 coding downstream 38840 14248674 ~ 14292162 (-)
LOC103035550 paqr4,paqr4a,LOC105897660,LOC106601588 coding downstream 133762 14166440 ~ 14197240 (-)
LOC103035240 LOC103035240,LOC108427335,LOC107658445,LOC107729508,LOC108280773,LOC107583063 coding downstream 182720 14117591 ~ 14148282 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding downstream 366164 13683879 ~ 13964838 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding downstream 659320 13631779 ~ 13671682 (-)
armc5 armc5 coding upstream 8473 14341920 ~ 14350288 (-)
LOC103037078 LOC103037078,LOC108427313 coding upstream 20905 14354352 ~ 14360091 (-)
LOC103036770 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 coding upstream 28187 14361634 ~ 14371508 (-)
arl6ip1 arl6ip1,LOC107658451 coding upstream 50787 14384234 ~ 14398697 (-)
smg1 smg1,LOC107729485 coding upstream 71150 14404597 ~ 14463984 (-)
G10561 NA non-coding downstream 24472 14306272 ~ 14306530 (-)
G10430 NA non-coding downstream 309113 14021687 ~ 14021889 (-)
G10429 NA non-coding downstream 320589 14010176 ~ 14010413 (-)
G10413 NA non-coding downstream 413164 13917124 ~ 13917838 (-)
G10379 NA non-coding downstream 655709 13673955 ~ 13675293 (-)
G10595 NA non-coding upstream 359335 14692782 ~ 14694894 (-)
G10649 NA non-coding upstream 373886 14707333 ~ 14708613 (-)
G10654 NA non-coding upstream 437883 14771330 ~ 14771618 (-)
G10782 polr3d non-coding upstream 685844 15019291 ~ 15020115 (-)
LOC111194139 NA non-coding upstream 754424 15087871 ~ 15089128 (-)
G10560 NA other downstream 87208 14241061 ~ 14243794 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other downstream 247895 14038858 ~ 14083107 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 1038124 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 1513816 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 2652894 11676154 ~ 11678108 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 285929 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 454623 14788070 ~ 14797643 (-)
G10767 NA other upstream 589518 14922965 ~ 14923959 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other upstream 627385 14960832 ~ 14981569 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 939308 15272755 ~ 15278437 (-)

Expression


Co-expression Network