LOC103023776 (LOC108435289,LOC108278169,LOC107726099,LOC107662779)


Basic Information

Item Value
gene id LOC103023776
gene name LOC108435289,LOC108278169,LOC107726099,LOC107662779
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19191856 ~ 19207348 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674561.1
ATTCAGTCAGAAACGAATGATCCCGCGTAGCTGCGAGTCCGCCTGTAGTTTGAGTGAGAGCGGCGGCAGCGCTGTTTGTGTGTTGAGCTCAGTTTTAGATCAGAATATCCGTCATGTTTAGCTTTTGAACAGTAAATGAAGCGCAGtgttttatagtgtgtgtagttttaacTCCGCTGAGAGCTTTAGAAGCGTCTGGCTGGCTGTTAATCAGGTTCAGCTgctgttagcctgttagcactGAACCAAACACTCACAGACTCAAACAGTCAAACCCCCTCCGCTGCCCCGCTCCTACTGCTTTACTGCAAAATGGCAAAGAGAAAGAAGCTCTCCAACATGGTGATTGCGTGTGAGTGGGCATCTTGCACTTTCAAGGGAGAAAGCATGGAGGAGCTTAGTGATCACATGTCTGAACATCTGAAGGAGCATCTTGGTGAAGGAGATACGATGGAGGAGCTCGATGATTACCCGTGTCTGTGGCAGGGCTGTGAGTTCCTGGCTATGGGGAGCCCAAATGAGCTGGTCGCTCACGCGCATTTCCACATCTTCCACAGCAAACTTAAGTTCATTGGGACCCAGCTTCTGCAGTCGCATCCGGAGCTGCCCAGCTGCACTCAGGAACTCCACAGCAACAACCTCATCACAGACATCTCAGAGGGATTCGTGTGTCAGTGGGAACACTGTGATAGCACTTTCAATAATCCAGAGTGGTTCTACAGACATGTGGACATGCATGCACACTGCACAGAACTGCAGCCGCTCCCAGACCAACAGCAGGCCCTTTTCTGCAGCTGGAAAGGTTGTGATGCGTTCTTTAAGATAAAGTATCGGCTGCGGGAGCATCTGCGCAGCCACACCCAGGAGCGCCTAGTGGCCTGCCCCACCTGCGGCTGCATGTTCTCCAGCAACACCAAGTTCTATGATCACATTCAGAGACAAGCTGAGCCTGAAGATACTCTGACCTGTGGCCATTGTGACAAGGGCTTTGCTAATGAAAGATTGCTGAGAGATCACGTTCGACAGCACGTGAATCACATAAAATGTCCCCTCTGTGACATGACTTGCACGTCCCTTTCCACCCTGAAGATCCACATCAAGTTCCGGCACTGTGACGAACGGCCCTTCCCATGTGACTTCTGTGAGAGCAGCTTCAAGAACCAGCATGATCTGAGGAAGCACATGGAGACCCATAATGAAGGAGCAGcgtatcactgctcagtggAAGGCTGTGGATACTCGTCTCGCATGGCTCACACCATGAACCAGCACTACAAGAGAGTGCACGAGGGAAACATGGTGTCCAGATATAAATGTCATCTGTGTGACAAGAACTTCTCATGGTGTTACACCCTTACCCTCCACCTGCGAAAGAAACATCAGCTCAAATGGCCGTCTGGACACTCGCGCTTCAGGTATAAAGAAGACGAGGACGGATACCTGAGACTCAACATGGTTCGCTTTGAGACAGTGGAGGTTACAGAAGAGCTGATAAAGAACATGGCGGAAAAGCGCACCCCACGCAAGGTCTCTGGGTCAGGCGGCCAGGGTAAGAGGCCAGCACTGCAGGCAGAGTGTGTGAACGATGTTCCCACGCAATCTTCCTCATatccctcctcttcctcatcatCCAGCCCAGAGCTCCTGGGTGAGGCTGAACCTAGCCCTGTGAAGGACTGTGCTCCTGTGTACTGCGTCCTCGACACAGTGAGCGAGATGAACGGGGAGCCGGACGCCACTGAGCAGCCAGGTACTACTGAATCAGGTGCAGTCCGAGCCCTGGCTGCAGTGGCCAGAGGGCTGGGTATGGATGTAGTGTGAGAGGAACATTATCAGTGTTATATCATCTGATTTACATAGCACATAGTCTCATTAAGTTCTACTGAACAAGAGTAGTGCTCCTGTGCTTACAGGACCTCTAGATTTCAGTTTTTCAGTGGACTAAgaattttagcttgttttaaagtttaagtttttagcattttacaaTGTCAGCTTTCATTTTTTCAAAATCTCAGGTTCTCAGTGTAATTATAGAGAGGATTTTGTCTGTTTCACGTTTGTGTTTTAGATAATATTTTTGTGTCGTTATTTATACTTGTATAAAACTTTGGTGTACAA

Function

NR:

description
PREDICTED: histone H4 transcription factor-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674561.1 True 2121 mRNA 0.49 10 19191856 19207348

Neighbor

gene id symbol gene type direction distance location
LOC103023129 phldb1,LOC108277892 coding downstream 135119 18888019 ~ 19056737 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding downstream 353633 18833424 ~ 18838223 (-)
pou2af1 NA coding downstream 429103 18735401 ~ 18762753 (-)
LOC103040343 LOC108443348 coding downstream 559209 18614197 ~ 18632647 (-)
tubd1 tubd1,LOC107581164 coding downstream 746056 18439140 ~ 18445800 (-)
LOC103041420 NA coding upstream 10024 19217372 ~ 19230909 (-)
LOC103042129 thap12,LOC108278397 coding upstream 25995 19233343 ~ 19237928 (-)
trnap-cgg NA coding upstream 31558 19238906 ~ 19238977 (-)
LOC103042959 LOC108435292 coding upstream 77631 19284979 ~ 19312628 (-)
LOC103024090 NA coding upstream 152437 19359785 ~ 19370144 (-)
G11720 NA non-coding downstream 70697 19117942 ~ 19121159 (-)
G11712 NA non-coding downstream 97812 19091508 ~ 19094044 (-)
G11608 NA non-coding downstream 259695 18879117 ~ 18932161 (-)
G11605 NA non-coding downstream 289609 18884146 ~ 18902247 (-)
G11619 NA non-coding downstream 366933 18824703 ~ 18824923 (-)
G11742 NA non-coding upstream 59090 19266438 ~ 19266734 (-)
G11747 NA non-coding upstream 167883 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 183955 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 246045 19453393 ~ 19475044 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding upstream 324041 19531389 ~ 19532500 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 80284 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 2838022 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3187137 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3289423 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3905121 15285676 ~ 15286735 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 34408 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 578633 19785981 ~ 19802323 (-)
G11917 NA other upstream 791092 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1767734 20975082 ~ 20975154 (-)
G12767 NA other upstream 2786459 21993807 ~ 21994751 (-)

Expression


Co-expression Network