LOC103024090


Basic Information

Item Value
gene id LOC103024090
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19359785 ~ 19370144 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674647.1
TGCGACTCTTTGCCCAGGTCAGACAGGATAGGATCATCGTTCAGGGATTAAAAGAAAGCACTGTGGGAATTTCTCAGAGGCCTTAAGCTTTTCTTCTGTACTGATATTGATGTAGGGACAGTAGCTAGTAGCTGAGATGTTTGTCTTCAGCCTTCTTCTACTTGGAGTGCTCCTTCCAGGCTTCCAGGCCCTCACTCTGGAAGAATGTGGCAGCAATGCCAGACGTCCAGCGTACACAGACATTTCCGTGGCCTGTGGGACCCAGTTTATTGAGTTGTCCATCTTGGTATGTCCTGTCATTTATACTGGATACAATGAGAGCCTGCTGATTCTCAACCAAATGGGGAATAATCCCAACTGTCAGGGGCGGCTGAACACCTCGGTCACTCCTCCGGTCGTCCGCTTCACTTTCCCACTCAGAGAGGCTGATTCCTGTGGCAGCAACTTTGTGaccaCCAGCGCTCCAGGCACAGGCATCTTCTCAGACTTCTCTAACATCCAGACGGTGAACGTGAGTGGGGTGGTCCGCTCCTTCGACCCCACAGTGGGAACCGTGACTTACAATGCTGAGCTGTCCTACTTCTACTCATGTGCTTATCCGCTGGAGTACCTCATCAACAACACAGTCGTTGATGTGTCGTCCTCCTCCATTGCAGTAAAGGACAAAAACGGTACGTTCATCAGCACTCTGAGCATGCAGCTCTTCAAGgatAGGAACTACACTTCTCCGCTGATAATCCCTCCTCTGGGAATTGAAATGAGAACTACTATATATGTTCAGGTCATCGCTGCGAACCTGACAGCACAATATAATGTTATGCTGGACCAGTGCTATGCCTCCGTCTCTCCTCTGCCCTCCAACTCCACCGTTTTCAATCTTTTTGTCTCGTGCTCAAAGGACCGCTTTACTACCATGTATGAAAACGGAGACACGCAAAGAGCTCGCTTCAGCTTCCCGGCCTTCAGATTCACCGAGCAGCAGAACCAGACCGTCTCCACCTACTACCTGCACTGCATCACCAGGCTGTGTGAACGCACCAACTGCAACCAGTTTAAGgtGGGGCAgtgcaggaggaagagaagagaggctGAGACGACTATAATTAAGGACAGTATCTCTGCGCTCATCACTTCAGTGCCCATTGTGACTCAGGAGGACAATTccatGGCCTCCAATACAGtgACCACCCAGGCCAAGGCTGCAAATAAAGGTTCCTCAGTGGGTCTGAGCGTTGCTGTGGCTGTTCTGGTTGTGGTGGGCACCGTCGCTGCCCTGATGGCTGTGACCTTTTACCGCAAACTCAGGTGGTTCCACTGATCGCCATCTGTCGTCTGACGTCCGTGATGGGGGACTTGCTTGAGTGCAGGTTGAGGAGGGAACCTGGGCTTTCACCCTGCTGTCTGTGCATAGTTTTGCATTAACTTTTCCTATAGAAGGTTATGTGGTCTGTCATAAGACTATATAATACTCATAAAAAAGGTATGGGCAGTTTATAATATCAACATGTGCTGTAAACTttgcgaaaaaaaaaagttttttttattctctcacATGTAAACTGTCATTTTTTCACTgtgttgttgaaaaaaaaaatgctggtagGGTTTTgcaaatattactgttaatttcTTACAGTTTGCTGCCACGATAATGGGAACACTTGAGTAAGTGGGGAATATAAATGATGTAAAAGCAGGAGCTTCAAAACAGATGTGGCTCATGAATTAGCTGAGTTTTCAACTCAGGATGCAAAGCCAGAGGTGGTTTAAAATAGCCTCTTTTTATGGTTGTACTCAGTGATTCATCCGCACTTTTATCAAATTTGTATCCTTCATTCACTCCAATGTtgcttttatgtgtttttggcTGTTGATTGGTCTCTGCGGATCCAGCTTTTAAACAATTCTCCACAACAGAGAGCCTGAAGGCCTTGAATATTGTAATTCAATAAACTGTATTCAGTGAAAGAAGCAGACACAACTGCTTTAGTAGCTTTAGGAGCTTCAGTAGCTGTAGTGGCTTTAGTGCGGTAGTCAAGAGAAATTAATAATGTTGATGGACATGTATTGGTAGAGCATCTTGCTGAATGCATGATTATTCCTTACAAAATGGTCTGAACTTCTGTTTTGCTCTCATCTAAAAGCCTTTTGATTGAGACGAGCTCCCGTGCATTTTGTCCCGGTTCTGTTGAAACAGCAACTCGCAGGATAGAAGGAACGCATTAACGAAGAAGGTCTAATGCGTCTGTTGCAGATTGCACGGCTAGACGGCTGTTAATGTAGACTATTGATTTTGAGAACATCACTGTGTTTATATCAGCTCTTATAGTGTATATGCAtgtgttattatcattattattgggCTATTAAAGCTTACAGGGCTGTAAAGATTGGCTGCATGACTTCATTCATTCTGTTAGCCATTAAGACTCCATTACATTGACTACATATAGTGTGTTTACAATCACAGTATCGGCACTCCTACTCTTATATTTAACTCTTTAGCGTACAGTGACTTTACAGTGAGTACACAGACCTGTAATGGTATGTAAATGTTGTTAATAAATtgttaataaactgtttaaaac

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674647.1 True 2588 mRNA 0.44 10 19359785 19370144

Neighbor

gene id symbol gene type direction distance location
LOC103042959 LOC108435292 coding downstream 47157 19284979 ~ 19312628 (-)
trnap-cgg NA coding downstream 120808 19238906 ~ 19238977 (-)
LOC103042129 thap12,LOC108278397 coding downstream 121857 19233343 ~ 19237928 (-)
LOC103041420 NA coding downstream 128876 19217372 ~ 19230909 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding downstream 152437 19191856 ~ 19207348 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding upstream 12920 19383064 ~ 19397085 (-)
LOC103024404 NA coding upstream 121691 19491835 ~ 19505349 (-)
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding upstream 166266 19536410 ~ 19541417 (-)
LOC103024723 LOC108435297 coding upstream 205662 19575806 ~ 19641080 (-)
acad8 acad8,LOC107582571 coding upstream 394228 19764372 ~ 19772616 (-)
G11742 NA non-coding downstream 93051 19266438 ~ 19266734 (-)
G11720 NA non-coding downstream 238626 19117942 ~ 19121159 (-)
G11712 NA non-coding downstream 265741 19091508 ~ 19094044 (-)
G11608 NA non-coding downstream 427624 18879117 ~ 18932161 (-)
G11747 NA non-coding upstream 5087 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 21159 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 83249 19453393 ~ 19475044 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding upstream 161245 19531389 ~ 19532500 (-)
G11786 NA non-coding upstream 172177 19542321 ~ 19542560 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 85931 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 248213 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 3005951 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3355066 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3457352 15758756 ~ 15902433 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 415837 19785981 ~ 19802323 (-)
G11917 NA other upstream 628296 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1604938 20975082 ~ 20975154 (-)
G12767 NA other upstream 2623663 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 4169113 23539257 ~ 23553970 (-)

Expression


Co-expression Network