LOC103024723 (LOC108435297)


Basic Information

Item Value
gene id LOC103024723
gene name LOC108435297
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19575806 ~ 19641080 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674736.1
GAGCGCTTCTCGTTTAAACGCAGGCAGAGCAACGGTCATCCTGAGGCGAGTGGACTGAGTGGATTCAGTGGCGGAGTGAAACCGGAGCGCTGGTGCGGAAAAACGGACAAAAACTCCGGCAGCGGAAAAGAGACACGACATTTTAACGTTTTAACCTTATTTCTGACTCCATATTTAACCCGTACCCGAGAAGGAGCGCTTCGTCATTCAGCTTTAGacagagataaatagagagttTGAGCGGTGCGTGTGTCGGTAATGCTGGCTGTTCTAGCTCCAGTGATGAATATCGATGTAACTAACGCTAACCTGCTGTTTTATTACACGGGAAATGTAGAAATAGAGTAATTAGAGGCCAGGCTTTATAATTAGCGATGTGACTTTAGGTTAAAAACGTCTCCTCGACTCTCCCACCTTCTCTATTAACGTTACTCTCTCACACTCCGCGCTGGAGGATGAGGCTGGGCTCCAGGctagccctgctgctgctgctgttcactcAGATATGCGCCTCCACGGGGTCTCGGCCACGTCTGGAGGACAGCCCACCTCGGATCGTTGAGGACCCATCTGACCTGATTGTGTCCAAGGGGGAGCCAGCCACCCTAAACTGCAAGGCAGAGGGCCGGCCCATGCCGACAGTGGAGTGGTACAAAGATGGAGAGCATGTGGAAACGGATAAAGATGACCCACGCTCGCACCGCATGCTGCTGCCGAGTGGCTCACTCTTTTTCCTACGCATTGTCCATGGCCGACGGAGCAAGCCGGATGAAGGTGTCTACACCTGCGTGGCACGCAACTACCTGGGAGTCACAGTCAGCCGCAATGCCTCACTAGAAGTAGCCACTCTTCGAGATGACTTCCGTCAGGCCCCTAACGATGTGGTCGTCGCTGCGGGTGAAACAGCTGTGCTGGAGTGTATTCCCCCTCGTGGACACCCGGAACCAAGCATCTCCTGGAAAAGGAACAATGTCCGCGTCAGTGACAAAGACGGGAGGATTTCTaTGCGAAGTGGCAAGTTGATAATCTCTCACACCCGAAAAAGTGACGCaggcatgtatgtgtgtgtgggctcCAACATGGTGGGCGAAAGGGACAGCGATCCGGCTGAGCTCGTGGTGTTCGagaGACCAGTGTTCATTCGTAGGCCGGTGAATCAGATTGTGCTGGCTGAGGACACTGTGGAGTTCTTCTGTGAGGTGCACGGAGATCCTGCTCCCACGGTTCGTTGGCGGCGGGAGGAGGGAGAGCTGCCTCGTGGCAGGTTCGAAATCCGCAGCGACAATAGTCTCCGTTTGCTGAGTCGAGAGGAGGACGAGGGCACGTACACATGTATGACAGAAAACAGCGTGGGGAAAACTGAGGCTCCGGCCACTCTGCAGGTCAATGtgccaCCACAGATTACCACCCAACCACGGGATCAGGTCTCCACCCAGGGCCGAACTGTCAGCTTTCACTGTGGCACTGAGGGCGACCCACCTCCAGCCATCTTCTGGCAAAAGGAAGGAACTCAGATGCTGTTGTTCCCCGGGCAGCCTTTCTCTCGGGCTGGACGCTACTCTGTGTCCATGAGTGGAGAGCTGACCATTAGGGATGTCCACAGTGAGGATTCTGGCTACTATGTGTGCCAGGCTATCAGTGTTGCAGGCAGCGTTGTCTCTAAAGCATTGCTGGAGGTGAAGGCTGGCCCATCAGACCTGGTTCCTCCCATCATCCGCCAGGGCCCAGCCAACCAGACGCTGGCCCGGGGCTCCAGCGTCCTGCTCCAGTGCCATGTGACGGGCAGCCCGCCCCCAAGCATCAGGTGGGAAAAGGACGGACAAAGCCTCCTGGGGGACGACATCCACATAAGCCTAATGGAAAACGGCACTTTACACATCAGCGACTTGCAGGAGACAGACTCAGGGACGTACACCTGCGTCGCATCCAGTTCCACGGGCGAGATGAGTTGGAGTGGGACCGTGACCGTGAGAGCTACAGGAACATCCTCTGTCCCGCGCATTTCGCTGGCCCTGCAGCTGCCAGGACCTCCTCAGAAGCCCGTTGTGACGGACGTGAGCCAGAGCAGCGTCACCCTGACCTGGCAACCCAACCAGCACGAGGGGGGTGCTGCAGTCACCTCTTACATTATTGAGGCTTTCAGtcagTCAGTGGGCAGCACATGGCAGACAGTAGCAGACCAGGTGAAGCAGGAGAAGCACACTGTGTCAGGCCTGTACCCCAACACTGTGTACCTGTTTATTGTCAGAGCGGTCAATTCCTATGGCCTGAGTGACCCCAGCCCCATTTCTGAGCCTGTCAGAACACTAGATGGCAGCTCCAGCGGTCCAGCAATTGATCACAGACGTATACAGACAGATTTCGCAGAGGTCACAGTTTATCTTCACCCGCCAGAGATCCTGACTCCCACTAGTGTGCAGATCACATGGACTGCTGAGCGTGAACCGCAGTACATTCAGGGCTACCGGCTCCTGTACAGGCCAGTGGGCAGCGCCTGGCTGGTTCAGGATATAAAGGCAGGGCCTAAACACACAGCGGTCTTATCAGATTTGCACAGAGGCACAGACTATGAGCTGAAAATGAGGCCTTACTTCAAAGAATTCCAGGGATCGGACAGTGATATGGTTCTGGTTCGCACCCCAGAGGAAGTGCTAAGTGGCCCCCCTCAGACGGTGAGTGTGGTCCAGCTGAGCAACAGCTCCACCCTCCGTGTGTCCTGGGAGCCTCCTGTCACTGATGGTCAGGATGAGCCAGTTCTGGAGTACAGGGTGTGGTGTGCAGGAAATGAGTCTGGCCTGCAGTATATGAACCGCAGTGTGGATGGGGATGTTCTGTGGGCTCTGTTAGACGGCCTGGTACCGGAGCTGCTGTACCGTGTACAGGTGGTGGCTGTGACCGGCTCAGGAATAGGGACACCCAGCCGTCCCGTCTTCATCTTCCTCAGACCTGTGGGAGAGCCATCATTGCCAGCGGACGACAGCATCAGTCTTTCAGAGCAGATCTCTGGAGTGGTCAGACAGCCGGCCTTCATTGCTGGATTAGGTGGCGCCTCCTGGATGGTGCTGATGGGCTTCAGTGCTTGGATCTACTGTAGACACAGGAGGAGAAAAGAGCTCGGCCACTACGCCACTTCATTCGCATACACACCTGCAGttGGACTCTCTCATAGCGATGGATCAGGACTAATCAATGGAAGGCCTTGCTTGCTTGGATCAAATATGGGAAACTACCCCTGGCTGGCAGAGTCGTGGCCAACTAGCAACTTCACCCACACCAGCAAAGACTCCATGACCTGCTGCTCGGGTCAACATGACTCCACAGACAGATACTACAACACTGTCGGCATCACTAACTTCCTCAAACAGAGTAATGCATACAGTCCAACATCTAATGAGGGTCCCATCTACAGCACTATTAATCCAGCTGATGAGGAGCAGCATGACCTGAGCAGTCTGTACTCCCAAGGTCCAGACCCCTACAGCAGCTCACCAGCACTTTCCAAAACGGATGTGTTCGGTCTGGATCATGATCTTGACCAGTGGAGTATCCAGTCTGGGAACAGCACAACTGAATACGCCAAACTCCAATATCCAAGGATAGGCAAAGCCAATGTGGGATTGCACAAGTCCTGCACACCTGCTGCCTTTACCTGGTCTGAAGTCCTGTCCCTGCCTCCACCAGACACCAGAGAACAGAGACATCAAGAGAGACAGCGACCCAGCTCAGAGGATGATGAGGACTGGTGTCCTCCTCTGCCGGAAAGGACGTATCTGTTCGAGAGTTTGGAAAATTCAGCCACATTGCCTCTGAGAGGAGAGCAGACTGGACGAGGAACTACCTACAGCCAGCGACCTACAACCTTCCTCACACCATCTCCACACGAGGAGCGACGACCAGCTAACTCTCGACTTCCACATCCTGACCTACTGCCAagCAGTAAGCCAGCATGCTCACTTGGATCCCAGATACCTCTGTCCCACCCCAATCTACTGTCCAACCAAGAATCTCACAGTGGCAGCTTGCCTCATCTGACAGGCCACTGGAGAGACGTTGGTCAGCTGGACAGGCTGCTGTCAGACAACACTAAGCATTTAATAGGAGAGTTTGCTTCATTTTCTCCTGAGAAAAGTATTCCTTCACCCAATCACCAACAAAGGCCTAAAAGAAAATCACCCAGAGATGGACGGAGAAGAGAAATCTTAAAACCAGGAGACCTACCACCTCCCCCTGAGCCCCCTCCTGCAGAAGACTCTCTGAAGCAGCTGGCTGCCATGTTGGAGAGCGGCAGCAGAACCCCCCCATCCCGCCAAGAAAGGAGGGCGGAGCGCAGAGCTGCCAGCCAGTGGAGCGCAGAAGATGAGGAGCTGATCCAGTACTGTAAGATGAATATGACAACCAGGAGTCAGGTGTCCAGTCACTGTTCCTCCACTGGAAGCCCCTCCTCCCGCTCCTCCACCTCCTCGCGCTCCTCAGGGGCAGCCAGGAGGAGAAATGAGaatatgaTATAAGGAGGGAATGATGATGCGTTTGTCCTTAGCATCCTGCTGTGCCATCCCTCTCGAATCTCCAACCTGCGTTGATTGAAATAATGAATTAGAGGCCAGTAGAACACAAGAGCCATACAAGTGTATGTGATTCTCATCCACTTTGTCAATCATGGTTGATggatgtttgtttatttaattgtttatttatttctctatttatttattaatttatttaatttatttattcacttgtgttgtttttgtacgTTTTTCTTTTATGTCCTATTTACACTCTGCCtttatgtgtatataaatacttttgacTATGTTTCGTGTGCGAGGAAATTGGGAAATCACCAAGGGAAGGAAAAGTCCCGTCTGTATTTTTGTCCAACAAAGTATGTTTCTGAATGTATTTGCTGTTTACATGTATAACTGGATGTTTACATGTAATGCCATGGTGTTTATATTGTGCTATACAACAATACAATAGTATTATCAGACACAGTCTATGCGATCCAAGCCCATCAGAGTGGTATGGTAGAATAGACCAGCAGCCTAGAGTCCTTCTCTGTGAATCTCCACCATCACTGAACCTCCGCTTCTAATCCGTCCACGCTGCAGAACGTTCATCTGTTCAACAGATCAGAGTCTTGCCTGCCAAGCTTCGCTCCTGAACGTGTGTGTTCTAAACATGCTTAAAGAAAAGGGTCAAGTGAAAATGCTAACGTTGCTAGCGCGGAATAAAAGTTAGCGGGGCCTGTTAGCATTATGCAAACGATATCACCTTTCACTGTCAGACACTTGGTTATGTCCTCCAGCCTATTTTGAttgcagcagaaaacacaataaaacaaatgtgacatttttttaaa

Function

NR:

description
PREDICTED: roundabout homolog 2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674736.1 True 5362 mRNA 0.52 28 19575806 19641080

Neighbor

gene id symbol gene type direction distance location
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding downstream 34389 19536410 ~ 19541417 (-)
LOC103024404 NA coding downstream 70457 19491835 ~ 19505349 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding downstream 178721 19383064 ~ 19397085 (-)
LOC103024090 NA coding downstream 205662 19359785 ~ 19370144 (-)
LOC103042959 LOC108435292 coding downstream 263178 19284979 ~ 19312628 (-)
acad8 acad8,LOC107582571 coding upstream 123292 19764372 ~ 19772616 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding upstream 136777 19777857 ~ 19783640 (-)
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding upstream 426434 20067514 ~ 20439549 (-)
dixdc1 dixdc1 coding upstream 1271514 20912594 ~ 20943980 (-)
LOC103030049 NA coding upstream 1572153 21213233 ~ 21219097 (-)
G11790 NA non-coding downstream 25927 19549678 ~ 19549879 (-)
G11786 NA non-coding downstream 33246 19542321 ~ 19542560 (-)
G11753 NA non-coding downstream 40207 19391303 ~ 19535599 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding downstream 43306 19531389 ~ 19532500 (-)
G11763 NA non-coding downstream 100762 19453393 ~ 19475044 (-)
G11821 thyn1,LOC107582572 non-coding upstream 132549 19773629 ~ 19777715 (-)
G11938 NA non-coding upstream 580065 20221145 ~ 20222103 (-)
G12018 NA non-coding upstream 872481 20513561 ~ 20513760 (-)
G12115 NA non-coding upstream 1048255 20689335 ~ 20723912 (-)
G12118 NA non-coding upstream 1079562 20720642 ~ 20731920 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 301952 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 464234 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 3221972 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3571087 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3673373 15758756 ~ 15902433 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 144901 19785981 ~ 19802323 (-)
G11917 NA other upstream 357360 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1334002 20975082 ~ 20975154 (-)
G12767 NA other upstream 2352727 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 3898177 23539257 ~ 23553970 (-)

Expression


Co-expression Network