acad8 (acad8,LOC107582571)


Basic Information

Item Value
gene id acad8
gene name acad8,LOC107582571
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19764372 ~ 19772616 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674751.1
CCACGTGTTACGTCACCGCTTTAGCTAGCAGGTCTGAGAAGCAACATGGCAGCGACCGCAGCTCTGTGTAGACTATCCCGGCTGGGCTCTTACAGCTTCAAGAGGAGCAGAGGATTGATATTTAACAGAGTTCAGAGCCGGGGGATCGCAGCCTGCATCGACCcttcaattGGTCTCACAGATGAACAGAAGGAATTTCAGAAGGTGGCATTTGATTTTGCTGCCAATGAAATGGCACCACATATGGCAGAATGGGACCAAAATGAAATGTTTCCAGTGGAGACCATGAGAAAAGCTGCACAGTTGGGTTTTGGGGGGATCTATGTGCAGCCAGAGGTTGGAGGTTCAGGACTGTCTCGGCTCGacacctcaatcatttttgaagCTCTGTCCACGGGCTGTGCCAGCACCACCGCCTACATCAGCATTCACAATATGTGTGCCTGGATGATTGACACGTTTGGTAGTAATGAGCTGAGAGAGAAGTTCTGTCCTGATCTGTGCTCCATGGAGAAGTTTGCCTCCTACTGTCTGACAGAGCCTGGTAGTGGAAGTGATGCAGCGTCTCTATTGACCAACGCAAAGTTACAAGGAGACCACTATGTTTTGAACGGCTCAAAGGCTTTCATCAGTGGAGGCGGGGACACAGATGTGTATGTGGTGATGTGTCGTACCGGCGGGAAGGGTCCTAAAGGGATCTCCtgtgtggtggtggagaaggGAACTCCAGGACTCAGTTTTGGCAAAAAGGAGAAGAAGGTGGGCTGGAACTCTCAGCCGACGAGAGCAGTAATATTTGAGGACTGCGCAGTTCCTGTGACTAATCGTCTGGGGGTGGAGGGACAGGGCTTCAATATTGCCATGAAAGGTCTGAATGGGGGCAGGATTAACATCGCTTCCTGCTCTCTGGGGGCGGCTCATGCGAGTGTTCAGCTGGCCCGAGATCATTTATGCATACGCAAGCAGTTTGGGGAAACGCTTTCAAACAGCCAGTTCCTGCAGTTTAAGCTTGCTGAGATGGCCACCAGATTGGTAGCGTCTCGGCTGATGGTGCGTCAGGCGGCTGTGGCTCTACAGGAGGACAGGCCGGATGCTGTTGCGCTTTGCTCAATGGCCAAACTCTTTGCTACAGATGAGTGCTTTTCAATATGTAACCAGGCTCTGCAGATGCACGGCGGATATGGTTATCTTAAGGATTATGCAGTGCAGCAGTTTGTTAGAGATATAAGAGTGCATCAGATACTGGAAGGTACGAATGAAGTGATGAGGATGATCATTGCCAGGAATTTATTGACCGAGTCTTGATCTTCTTCATCCTGGACTTCAAGTACAGAATGGACTCCTTCACTCTGGTTCTGGGCTCTTGTGCACAACACTAACCACAACTTTCGTTTTTTAAACTCTGAGTAAAGAGCTGGACAGAATTGTACGGTTTGGGGTTGTTGGTAAAAATCTTAGCTGTATTATTGTGCTATATTCCAAATTCTGATctaattaaaaagaaagagaaaattgCATAGAGATTATATATTTGATTACACTCCACTGTGAAGTGTCTTTaatgttgtttcttttttctttatcattTCATTGTTAAAAAATCTTGTTAAACCCACTGAATGCCTTATTTG

Function

symbol description
acad8 Predicted to enable acyl-CoA dehydrogenase activity and flavin adenine dinucleotide binding activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human ACAD8 (acyl-CoA dehydrogenase family member 8).

NR:

description
isobutyryl-CoA dehydrogenase, mitochondrial isoform X3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K11538 ACAD8; isobutyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674751.1 True 1631 mRNA 0.47 11 19764372 19772616

Neighbor

gene id symbol gene type direction distance location
LOC103024723 LOC108435297 coding downstream 123292 19575806 ~ 19641080 (-)
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding downstream 222955 19536410 ~ 19541417 (-)
LOC103024404 NA coding downstream 259023 19491835 ~ 19505349 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding downstream 367287 19383064 ~ 19397085 (-)
LOC103024090 NA coding downstream 394228 19359785 ~ 19370144 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding upstream 5241 19777857 ~ 19783640 (-)
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding upstream 294898 20067514 ~ 20439549 (-)
dixdc1 dixdc1 coding upstream 1139978 20912594 ~ 20943980 (-)
LOC103030049 NA coding upstream 1440617 21213233 ~ 21219097 (-)
sorl1 sorl1,LOC107717255 coding upstream 1544885 21317501 ~ 21450195 (-)
G11801 NA non-coding downstream 95130 19639485 ~ 19669242 (-)
G11790 NA non-coding downstream 214493 19549678 ~ 19549879 (-)
G11786 NA non-coding downstream 221812 19542321 ~ 19542560 (-)
G11753 NA non-coding downstream 228773 19391303 ~ 19535599 (-)
G11821 thyn1,LOC107582572 non-coding upstream 1013 19773629 ~ 19777715 (-)
G11938 NA non-coding upstream 448529 20221145 ~ 20222103 (-)
G12018 NA non-coding upstream 740945 20513561 ~ 20513760 (-)
G12115 NA non-coding upstream 916719 20689335 ~ 20723912 (-)
G12118 NA non-coding upstream 948026 20720642 ~ 20731920 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 490518 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 652800 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 3410538 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3759653 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3861939 15758756 ~ 15902433 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 13365 19785981 ~ 19802323 (-)
G11917 NA other upstream 225824 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1202466 20975082 ~ 20975154 (-)
G12767 NA other upstream 2221191 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 3766641 23539257 ~ 23553970 (-)

Expression


Co-expression Network