LOC103025963 (cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448)


Basic Information

Item Value
gene id LOC103025963
gene name cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20067514 ~ 20439549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674840.1
AAGTGCTCCGGCAAGGTTGCAAAAAGACGTTCTGGCAACCTGGGGTGTGGCGTTGATAAGGTGGGCGGGGCATAGCGTCTGAGACAGGAAGTACGTCAGAGAAATCGTAAGGTACCTGAGGAGCAGCAAATTTCACTCAACACTAATGAGGGTCAAACAGCATTACAGAGGTGATTTAGCGCCGCCAGTCTGAAGCAGGTGTTCATCATGGCGAGCTCGACCAGCGGATCTCTCTGTGTTCCTCTGCTCCTCTCCCTGCTGTCTGCGGCTCTTCTGCCTGAAGGAGCTTCCCAGACCATAACAGCACAGGGTCAGAACCTGGTGACGGGAAACGTCTCGGTGATTGAGGGCGAGACGGCGACCATCAGCTGCCGGGTGAAGAACAACGACGACTCGGTCATCCAGCTCCTCAACCCCAACAGACAGACCATCTACTTCAAAGACGTCAGACCCCTGAAGGACAGCCGGTTTCAGCTGGTTAACTTCTCCGACAACGAGCTGCGCGTGTCGCTGTCCAACGTGACGCTGTCGGACGAGGGACGGTACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCAGACATCACCGTCCTGGTTCCGCCAGGCAACCCAATCATCGAGTCCCGCGAGGACGTGGTGAGTGAGGGGAATGAGACGGAGATAACCTGCACTGCCATGGGCAGCAAGCCTGCCTCCTCCATCACGTGGATGAAGGGAGACCAAATCCTACAAGGTGAGGAGACGGTGGAGGAGACGTACGACAGGATGTTCACCGTCACCAGCCAGCTCCGGCTCACCGTCTCCAAGGAGGACGATGGAGTGCCCGTCATCTGCATCATTGACCACCCGGCCGTGAAGGACTTCCAAGCACAGAAATACCTGGAAGTGCAATATAAACCAGAGGTGAAGATTGTGGTGGAGTTTCCACAGGGTCCCACGAGGGAAGGGGAAAACCTTGAGCTGACGTGCAAAGCCAAGGGCAAACCACAGCCCCATCAAATTAACTGGTTGAAAGTGGATGATGATGTTCCCTCCCACGCGGTGATTACAGGCTCTGATCTCTACATCGAGAACCTCAACAAGTCCTACAACGGAACGTACCGCTGCGTGGCCTCCAACTTAGTGGGAGAGGCTTACGATGAATACATCCTGTATGTGTACGATGTTCTCGCCACAACCCCCCCACCCACTACTACCACCATCAACCCTGACGCTGCCCAAGattcaAGAGCGGACGGAGGGCCGCAGAAAATCGATCACGCAGTCATCGGCGGAGTTGTTGCAGTGGTTGTGTTCGCCATGCTCTGTCTGCTCATCATTTTGGGACGCTACTTCGCCAGACACAAAGGCACCTACTTCACTCACGAAGCTAAAGGAGCGGAGGACGCTGCAGACGCCGACACAGCCATCATCAATGCTGAAGGAGGACACAACAACACGGACGACAAGAAGGAGTACTATATCTAACTCTGACTAGAGCTGCTAGCCACCCCACCCCTCCCTGCCGGACCAGGAGCCTGCGGGGGTCCTGCTGGATTAGGGAGGGAGGGCTCGGGTTAGTCcaagctgtatttttgtttctttttttgggaTTGGAGGGTCGACCCTGCGCagcagaagaggaggagaaaggagAAGAAATGAGAGGAGAGGAGCGCTGCCATCGAGACTGAAGAGGTGTGGGATGGAGGAGCGTGAAGGAGAGCTCACTTTTAGAGAAGCTTCGCCATCCAACACCTCCCAACACCTCCTGCTGGTGCCggttttgttcagttttttcGACATTTTCgcgagggaaaaaaaaaaaagaagagaaatttTGTGCCTTGTTCTATTTATTTAGATGGAAAACACCTACTTTCTCATTCCCGCACCCACGAGTTGCGTACTGCTGGCTCTCTTCATACAGCAGGCCCCGTCATGCTGTGCTTTTTCGACGCCCGCACACACTCTTCAGCTTTCACATGCTCTCTCCTGCCAGCTGAGTGGAatacacaccatatacacatacatatatacatatacacacacacgcacacaaacacacactagttCAGACATGAGATTCAGTCCTGGAAGTACTGTTTAGGTCTCTTTAATGACTTGTTTCTGAGTGAATGACAGTGGATGACACTGTTGTGACAAACCTGAGCTGAAACTCATTCCGGTCCTCTTGTgttgttgcattatttaataGCCGTTCCGTGTGTGCAAATAATCTGCTTGTGTTAGTATTCATTCATTAGCGCCATGCCGTAAATGCCCACCTAGCAGTTTAATGGTAATTGCATCCgtgcattaaaaatgaatgccaAAGCAAATACATTAAATTGGCCCCGGTTCAAATGGATAGAGGAACTCTTTAATGCCAGCAAGCCCCCCACCACCGTCCTCATATCATAAACCAGACATGCTCCAGACTATAAAGTAGCTCCTGCTCCGTTTCTGGTTTCAGAAGATGGCATCAGGTGTAGTCCTCAAGGTTGGCGAGCTGCCACTGGCTGTAAGATTAAGCACTAAAGGTTTGCGTTTATGTAAACTcgctagggctgcacaatatatatcgGTTAAGCATTGTCATCGCGATGTGAGCatgaactctggtgtaaaatggacttttgttgtagtaaaacatgataaaaagttcttac
>XM_022674842.1
AAGTGCTCCGGCAAGGTTGCAAAAAGACGTTCTGGCAACCTGGGGTGTGGCGTTGATAAGGTGGGCGGGGCATAGCGTCTGAGACAGGAAGTACGTCAGAGAAATCGTAAGGTACCTGAGGAGCAGCAAATTTCACTCAACACTAATGAGGGTCAAACAGCATTACAGAGGTGATTTAGCGCCGCCAGTCTGAAGCAGGTGTTCATCATGGCGAGCTCGACCAGCGGATCTCTCTGTGTTCCTCTGCTCCTCTCCCTGCTGTCTGCGGCTCTTCTGCCTGAAGCACAGGGTCAGAACCTGGTGACGGGAAACGTCTCGGTGATTGAGGGCGAGACGGCGACCATCAGCTGCCGGGTGAAGAACAACGACGACTCGGTCATCCAGCTCCTCAACCCCAACAGACAGACCATCTACTTCAAAGACGTCAGACCCCTGAAGGACAGCCGGTTTCAGCTGGTTAACTTCTCCGACAACGAGCTGCGCGTGTCGCTGTCCAACGTGACGCTGTCGGACGAGGGACGGTACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCAGACATCACCGTCCTGGTTCCGCCAGGCAACCCAATCATCGAGTCCCGCGAGGACGTGGTGAGTGAGGGGAATGAGACGGAGATAACCTGCACTGCCATGGGCAGCAAGCCTGCCTCCTCCATCACGTGGATGAAGGGAGACCAAATCCTACAAGGTGAGGAGACGGTGGAGGAGACGTACGACAGGATGTTCACCGTCACCAGCCAGCTCCGGCTCACCGTCTCCAAGGAGGACGATGGAGTGCCCGTCATCTGCATCATTGACCACCCGGCCGTGAAGGACTTCCAAGCACAGAAATACCTGGAAGTGCAATATAAACCAGAGGTGAAGATTGTGGTGGAGTTTCCACAGGGTCCCACGAGGGAAGGGGAAAACCTTGAGCTGACGTGCAAAGCCAAGGGCAAACCACAGCCCCATCAAATTAACTGGTTGAAAGTGGATGATGATGTTCCCTCCCACGCGGTGATTACAGGCTCTGATCTCTACATCGAGAACCTCAACAAGTCCTACAACGGAACGTACCGCTGCGTGGCCTCCAACTTAGTGGGAGAGGCTTACGATGAATACATCCTGTATGTGTACGATGTTCTCGCCACAACCCCCCCACCCACTACTACCACCATCAACCCTGACGCTGCCCAAGattcaAGAGCGGACGGAGGGCCGCAGAAAATCGATCACGCAGTCATCGGCGGAGTTGTTGCAGTGGTTGTGTTCGCCATGCTCTGTCTGCTCATCATTTTGGGACGCTACTTCGCCAGACACAAAGGCACCTACTTCACTCACGAAGCTAAAGGAGCGGAGGACGCTGCAGACGCCGACACAGCCATCATCAATGCTGAAGGAGGACACAACAACACGGACGACAAGAAGGAGTACTATATCTAACTCTGACTAGAGCTGCTAGCCACCCCACCCCTCCCTGCCGGACCAGGAGCCTGCGGGGGTCCTGCTGGATTAGGGAGGGAGGGCTCGGGTTAGTCcaagctgtatttttgtttctttttttgggaTTGGAGGGTCGACCCTGCGCagcagaagaggaggagaaaggagAAGAAATGAGAGGAGAGGAGCGCTGCCATCGAGACTGAAGAGGTGTGGGATGGAGGAGCGTGAAGGAGAGCTCACTTTTAGAGAAGCTTCGCCATCCAACACCTCCCAACACCTCCTGCTGGTGCCggttttgttcagttttttcGACATTTTCgcgagggaaaaaaaaaaaagaagagaaatttTGTGCCTTGTTCTATTTATTTAGATGGAAAACACCTACTTTCTCATTCCCGCACCCACGAGTTGCGTACTGCTGGCTCTCTTCATACAGCAGGCCCCGTCATGCTGTGCTTTTTCGACGCCCGCACACACTCTTCAGCTTTCACATGCTCTCTCCTGCCAGCTGAGTGGAatacacaccatatacacatacatatatacatatacacacacacgcacacaaacacacactagttCAGACATGAGATTCAGTCCTGGAAGTACTGTTTAGGTCTCTTTAATGACTTGTTTCTGAGTGAATGACAGTGGATGACACTGTTGTGACAAACCTGAGCTGAAACTCATTCCGGTCCTCTTGTgttgttgcattatttaataGCCGTTCCGTGTGTGCAAATAATCTGCTTGTGTTAGTATTCATTCATTAGCGCCATGCCGTAAATGCCCACCTAGCAGTTTAATGGTAATTGCATCCgtgcattaaaaatgaatgccaAAGCAAATACATTAAATTGGCCCCGGTTCAAATGGATAGAGGAACTCTTTAATGCCAGCAAGCCCCCCACCACCGTCCTCATATCATAAACCAGACATGCTCCAGACTATAAAGTAGCTCCTGCTCCGTTTCTGGTTTCAGAAGATGGCATCAGGTGTAGTCCTCAAGGTTGGCGAGCTGCCACTGGCTGTAAGATTAAGCACTAAAGGTTTGCGTTTATGTAAACTcgctagggctgcacaatatatatcgGTTAAGCATTGTCATCGCGATGTGAGCatgaactctggtgtaaaatggacttttgttgtagtaaaacatgataaaaagttcttac
>XM_022674847.1
AAGTGCTCCGGCAAGGTTGCAAAAAGACGTTCTGGCAACCTGGGGTGTGGCGTTGATAAGGTGGGCGGGGCATAGCGTCTGAGACAGGAAGTACGTCAGAGAAATCGTAAGGTACCTGAGGAGCAGCAAATTTCACTCAACACTAATGAGGGTCAAACAGCATTACAGAGGTGATTTAGCGCCGCCAGTCTGAAGCAGGTGTTCATCATGGCGAGCTCGACCAGCGGATCTCTCTGTGTTCCTCTGCTCCTCTCCCTGCTGTCTGCGGCTCTTCTGCCTGAAGGAGCTTCCCAGACCATAACAGCACAGGGTCAGAACCTGGTGACGGGAAACGTCTCGGTGATTGAGGGCGAGACGGCGACCATCAGCTGCCGGGTGAAGAACAACGACGACTCGGTCATCCAGCTCCTCAACCCCAACAGACAGACCATCTACTTCAAAGACGTCAGACCCCTGAAGGACAGCCGGTTTCAGCTGGTTAACTTCTCCGACAACGAGCTGCGCGTGTCGCTGTCCAACGTGACGCTGTCGGACGAGGGACGGTACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCAGACATCACCGTCCTGGTTCCGCCAGGCAACCCAATCATCGAGTCCCGCGAGGACGTGGTGAGTGAGGGGAATGAGACGGAGATAACCTGCACTGCCATGGGCAGCAAGCCTGCCTCCTCCATCACGTGGATGAAGGGAGACCAAATCCTACAAGGTGAGGAGACGGTGGAGGAGACGTACGACAGGATGTTCACCGTCACCAGCCAGCTCCGGCTCACCGTCTCCAAGGAGGACGATGGAGTGCCCGTCATCTGCATCATTGACCACCCGGCCGTGAAGGACTTCCAAGCACAGAAATACCTGGAAGTGCAATATAAACCAGAGGTGAAGATTGTGGTGGAGTTTCCACAGGGTCCCACGAGGGAAGGGGAAAACCTTGAGCTGACGTGCAAAGCCAAGGGCAAACCACAGCCCCATCAAATTAACTGGTTGAAAGTGGATGATGATGTTCCCTCCCACGCGGTGATTACAGGCTCTGATCTCTACATCGAGAACCTCAACAAGTCCTACAACGGAACGTACCGCTGCGTGGCCTCCAACTTAGTGGGAGAGGCTTACGATGAATACATCCTGTATGTGTACGattcaAGAGCGGACGGAGGGCCGCAGAAAATCGATCACGCAGTCATCGGCGGAGTTGTTGCAGTGGTTGTGTTCGCCATGCTCTGTCTGCTCATCATTTTGGGACGCTACTTCGCCAGACACAAAGGCACCTACTTCACTCACGAAGCTAAAGGAGCGGAGGACGCTGCAGACGCCGACACAGCCATCATCAATGCTGAAGGAGGACACAACAACACGGACGACAAGAAGGAGTACTATATCTAACTCTGACTAGAGCTGCTAGCCACCCCACCCCTCCCTGCCGGACCAGGAGCCTGCGGGGGTCCTGCTGGATTAGGGAGGGAGGGCTCGGGTTAGTCcaagctgtatttttgtttctttttttgggaTTGGAGGGTCGACCCTGCGCagcagaagaggaggagaaaggagAAGAAATGAGAGGAGAGGAGCGCTGCCATCGAGACTGAAGAGGTGTGGGATGGAGGAGCGTGAAGGAGAGCTCACTTTTAGAGAAGCTTCGCCATCCAACACCTCCCAACACCTCCTGCTGGTGCCggttttgttcagttttttcGACATTTTCgcgagggaaaaaaaaaaaagaagagaaatttTGTGCCTTGTTCTATTTATTTAGATGGAAAACACCTACTTTCTCATTCCCGCACCCACGAGTTGCGTACTGCTGGCTCTCTTCATACAGCAGGCCCCGTCATGCTGTGCTTTTTCGACGCCCGCACACACTCTTCAGCTTTCACATGCTCTCTCCTGCCAGCTGAGTGGAatacacaccatatacacatacatatatacatatacacacacacgcacacaaacacacactagttCAGACATGAGATTCAGTCCTGGAAGTACTGTTTAGGTCTCTTTAATGACTTGTTTCTGAGTGAATGACAGTGGATGACACTGTTGTGACAAACCTGAGCTGAAACTCATTCCGGTCCTCTTGTgttgttgcattatttaataGCCGTTCCGTGTGTGCAAATAATCTGCTTGTGTTAGTATTCATTCATTAGCGCCATGCCGTAAATGCCCACCTAGCAGTTTAATGGTAATTGCATCCgtgcattaaaaatgaatgccaAAGCAAATACATTAAATTGGCCCCGGTTCAAATGGATAGAGGAACTCTTTAATGCCAGCAAGCCCCCCACCACCGTCCTCATATCATAAACCAGACATGCTCCAGACTATAAAGTAGCTCCTGCTCCGTTTCTGGTTTCAGAAGATGGCATCAGGTGTAGTCCTCAAGGTTGGCGAGCTGCCACTGGCTGTAAGATTAAGCACTAAAGGTTTGCGTTTATGTAAACTcgctagggctgcacaatatatatcgGTTAAGCATTGTCATCGCGATGTGAGCatgaactctggtgtaaaatggacttttgttgtagtaaaacatgataaaaagttcttac

Function

symbol description
cadm1b Predicted to enable cholesterol 24-hydroxylase activity and heme binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cleithrum; immature eye; and nervous system. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Orthologous to human CADM1 (cell adhesion molecule 1).

NR:

description
PREDICTED: cell adhesion molecule 1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06781 CADM1, IGSF4, NECL2, TSLC1; cell adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674840.1 True 2660 mRNA 0.51 12 20067514 20439549
XM_022674842.1 False 2639 mRNA 0.51 11 20067514 20439549
XM_022674847.1 False 2600 mRNA 0.51 11 20067514 20439549

Neighbor

gene id symbol gene type direction distance location
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding downstream 283874 19777857 ~ 19783640 (-)
acad8 acad8,LOC107582571 coding downstream 294898 19764372 ~ 19772616 (-)
LOC103024723 LOC108435297 coding downstream 426434 19575806 ~ 19641080 (-)
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding downstream 526097 19536410 ~ 19541417 (-)
LOC103024404 NA coding downstream 562165 19491835 ~ 19505349 (-)
dixdc1 dixdc1 coding upstream 473045 20912594 ~ 20943980 (-)
LOC103030049 NA coding upstream 773684 21213233 ~ 21219097 (-)
sorl1 sorl1,LOC107717255 coding upstream 877952 21317501 ~ 21450195 (-)
bco2 LOC108436497 coding upstream 1017582 21457131 ~ 21465432 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding upstream 1034863 21474412 ~ 21482404 (-)
G11821 thyn1,LOC107582572 non-coding downstream 289799 19773629 ~ 19777715 (-)
G11801 NA non-coding downstream 398272 19639485 ~ 19669242 (-)
G11790 NA non-coding downstream 517635 19549678 ~ 19549879 (-)
G11786 NA non-coding downstream 524954 19542321 ~ 19542560 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding downstream 535014 19531389 ~ 19532500 (-)
G12018 NA non-coding upstream 74012 20513561 ~ 20513760 (-)
G12115 NA non-coding upstream 249786 20689335 ~ 20723912 (-)
G12118 NA non-coding upstream 281093 20720642 ~ 20731920 (-)
G12120 NA non-coding upstream 289094 20728643 ~ 20755287 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding upstream 400657 20840206 ~ 20929217 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 265191 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 793660 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 955942 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 3713680 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 4062795 15979237 ~ 16004719 (-)
trnak-cuu NA other upstream 535533 20975082 ~ 20975154 (-)
G12767 NA other upstream 1554258 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 3099708 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 3344922 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 3464634 23904183 ~ 23908771 (-)

Expression


Co-expression Network