LOC103035031 (LOC108435305)


Basic Information

Item Value
gene id LOC103035031
gene name LOC108435305
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20522878 ~ 20731709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674851.1
accCCGAAAACACGCGCTTTCAGACAAACTCCACACTGAGAGGAATTAACACTAATAACAGCCGCAGAGAAACGACCTGTTTTACCCGGTGAATGCGATGTTTCAGAGCAGGGAGATCCTCTGGGTGTTTATATTCCTCGGCAGCGCAGtCTCTCTGCAGGTGGACATCACGCCTGCACAAGGCGAAATCAGCGTTGGAGAGTCCAAGTTCTTCCTGTGTGAAGTCGTAGGCGGAGTGAAGGGAATTGACTGGTTCTCGCCCACTGGAGAGAAGATCGAACCCAACCGGCAGGATATCACCGTGATCCGCAATGACGAGACGTCCTCTACCCTCACTATCTACAACGCTAACGTCGATAGCGCTGGCACGTACAAGTGTGTCGCCACCAGCGGCGACCAGCAAGCCGAAGCGACTGTCAACGTGAAGATATACCAAAAAATTGCCTTCAAAAATGCTCCATCCCCCCAAGAGTTTACAGAAGGAGATAACGCTATTATCGTGTGCGACGTTGTGAGTTCTCCTCCTCCCACCGTCATCTGGAAGCACAAAAGAGTAAAAGTCCAGTCTGAGAAAGATGTTCGCTTTAAGATTTTGAACAACAACCACCTGCAGATAAGAGGAATAAAAAAGACAGATGAAGGTGTGTACAACTGCGAGGGGCGTGTCATGACCCGGGGTGAGATCGACTTTCGCCCAATCCGAGTGGTGGTGAACGTTCTGCCGACTGTCAGAGTCCGTCAGGCTGAGGTGAACGCCACGGCTGACCTGGGTCTCTCCGCCATGCTGGCCTGCGATGGAGACGGCTTTCCAGAACCTACAGTCATGTGGAAACGTTCTCTCAGGAACGACGTTCTGCTGGAGAGCGGGGATAAGTACAGCTTCAATGAGGACGGCTCGGAGATGACTATAATGGACGTGAAGAAGTTGGATGAGGGAGATTACACCTGCATCGCCTCCAACAAAGCCGGCAAGGCTGAAGAAGAAGTCAGCCTCCGAGTCTTTGtcaAACCCAGAATCACATTTTTGGAGAACCAGACCGCCACAGAGATGGAGGAGCAGATGACGTTGACGTGCGAAGCCACGGGAGATCCCACGCCCACGATCACGTGGAGCTACGGCACACGCACGTTCACCGAGGGGGAACAGGAGCATCTAAAGAGGATTTATCAGGCCTCTTGGACTCGGCCCGAACAACACAAGAGTGCGGATGGAATGGTGGTGGTGCGCAGCGACGCTCGCGTGTCCTCCCTCACCCTGAAGTACGCTCAGTACACCGACGCCGGAGAGTACCTCTGCACCGCCCGCAACGCAGTCGGAGAGACCTCTCAGCACATGTACCTGGAAGTGCACTATGCCCCCAAAATCCTGGGCTCGGTGGCGGTCTACACATGGGAGGGAAACCCGGCCAACATCAGCTGCGAGACCCTGGCTCATCCCAGCGAGGTGTCTATTGTGTGGCTGAGGGATGGATTCACGCTGCCCAATGCCAACACCTCCAACATCAAGATCTATAACACTCCCTCTGCCAGCTTCCTGGAGGTTAACCCGGACTCCCAGAACGACTTTGGCAGCTACAACTGCACCGCCTCCAACGTGATCGGGACAGAGTCCAAAGAGTTCATCCTCATTCAGGCCGAAGTGCCCTCGGTACCAGTCATCACTCAGGTGCAGCCCTACTCCAGCACGGCTCAGCTGCTGTTCGATGAGCCTGAATCTTCAGGAGGAGTTCCTGTGCTTAAGTACCGCGCCGAGTGGAAAGCCATGAACCGGAATAACTGGGTCCAGAGAGTCTACGAAGTCAGAGAAGGAGGCTTAAACGCGATCACAATCACCGGCCTTAAACCAGAAACTCAGTACGAAGCCAAGATGTCTGCGATCAACGGtaaaggagagggagagagcagcTCTACGGTCTCCTTCAAGACGGAGCCTGTTCAAGGGGAACCCACCCCCCCCAAACTGGAAGCCATCCTACAGCCTAAAGGCAACGCCCTCAGAGTTAACTGGGTAAAGCAGGACGACGGAGGCTCACCTATCACTCACTATCTCATTCGATACAAAGCGAAAGAGGATCCGATATGGAAGCCAGAGATCCGGCTGCCCAGTGTGAGCGAGTACGTGCTCCTGAGTAGTTTAGACTGGAACACAGAGTACGAGGTGTTCGTAGTGGCCGAAAACCAGCAGGGCAAATCGAAACCTGGCATCCTGACCTTCCGCACATCCTCAAAGCGCGACGCCATTCCAGAATCCATGGAGGACGGTGCAGGACTGAACACAGGGGTCATTGTTGGGATCctggtgctggtgtgtgtgctgctgctcCTGGCTGTGGATGCCACCTGCTGCTTCCTCAACAAGTGTGGGCTGCTCATGTGTCTCTGCGGAAAGCCCAAGACGGGTGCGAAGGGCAAGGACATGGAGGCTGGCAAGGCTGCGTTCGTTAAGGACGATTCCAAAGAGCCCATTGTGGAAGTGAGGACTGAGGACGGGCTCACGGCCAATCACGACGCAGGAGGGCACTCTGAGCCCAACGAGACCACACCCCTGACAGAGCCTGAGCGACTGGCCGAAGCCGCGGCCACTGTGGTGGACTTGCCCTTATCAATGGCCACAAACTCAGACACAGTTACCGACACCTTTGACCTTAGCCAGAGCAGCCCCGTTAGCGAGAGCACCACCCTAACGTCCAGCCTCACGGCTCCGCCCCCTGATCCCAGACCTGCCCTGACCACAGGCCCTGAAACCAGCACCCCTAAAAGCTTCTCCCAGCCTCTTTCCCGCTCCCTGCTCTCCTCCGATGTTCCTTTGGTGGACCTGGCTGATCCTTTACCTGTTCAAATCCCAGAAGCCCCTTCCAACCAATCAATCCAGGCAGATTCTCAGATAACATCTCCTGATTTCACCAATCAGGAGCCTCCTTCTCCTAGTCttagttttagcacagaaaacacACCTAAAGAACCAGAGAACGATGCTGAAGAACTAGAGACGAGCCTGTTACAGAATTCACACGAACCCGTCCCTCAGAAAGTCCCCTCAATGAACCATGAGCTCCATCTAGATGAAGGAACCCCCCAGGCTTCAGAAACACACCTCCCCCAGGATGGCCCCGGGCACGCTCTGGGCACAGCTGGCTCCAGCGGCCCATCTGCTCCACAGAACGAGAAAATCCACGAAGACGAGTCGAGCAGGTCTGAAGACGAAGATTTGAAGAAGCTCCAGTCGGAAGCAAAGTCACCCATCGCCCTCTCGCTGGCGAACGACGTGGAGAGCAAGGCGTGATCAGAGCTGGCGAGctctgaaaggaaaaaaaataaaagaagaagaagaagtggtAGCGTCGCGGAAATGAACACAGGAACGTTCACTCTACAGTGCCCTTAacaaagcttttatttatttaattttttgtctgttttttttttttttttcaagcaaaACGAGTGATGAGTTTGAGAAAAGTGTGAGAGTTTTGTTGCACATTCTTGAGACTGGAGTGTACGGGCGTACgcgataaataaaaaaaaatgcgcCTCTTTCCGTTTCTCGTTCGTTTCCGTTGAAAAGTTGAAGTTATAAAAAGATGAAGTTAAACCTCAAGAAGAAACTGCTAATGCTGAGGCTGAATTTACGAGTTTGTTCTGTTGAATTCAGATAAACACGACAGAGAGTTCGTATCGCATTCAGACTCCTCCCAAAATATctctcaaaagaaaaaaagaagggtgttttattttgttactttgtttctttgtttgtttctttgcttctttgtttgatttttttctggAACACGGAAAACACGGGGCATTCAGGAGAATTTACAGCGCGTGTTCATATACAGTttgttcatatatataaaatgctctagacattatattttattttattttatttacttgctACATTGTTGAAATGTAAATGATTGCtcctatttttttatcttgagtctctggagggctagtcttgttaaatagttcgattgtatattttatttacattacgc

Function

NR:

description
PREDICTED: neural cell adhesion molecule 1-like isoform X3

GO:

id name namespace
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674851.1 True 4007 mRNA 0.51 22 20522878 20731709

Neighbor

gene id symbol gene type direction distance location
LOC103025662 arhgap32,LOC108435303 coding upstream 507456 19952453 ~ 20015422 (+)
igsf9b igsf9b,LOC107748591,LOC107662765,LOC107713446 coding upstream 583415 19826280 ~ 19939463 (+)
thyn1 thyn1,LOC107582572 coding upstream 745163 19773738 ~ 19777715 (+)
LOC103025032 LOC108435274 coding upstream 760643 19756536 ~ 19762235 (+)
LOC103047658 esamb,LOC108435282 coding upstream 768925 19680874 ~ 19753953 (+)
LOC103032372 zbtb16b,LOC108435307,LOC108278332,LOC107699906,LOC107597519,LOC107701406,LOC107713452,LOC107582577,LOC107748597 coding downstream 14320 20746029 ~ 20844121 (+)
tmprss5 tmprss5,LOC107713421,LOC107717179 coding downstream 120473 20852182 ~ 20900847 (+)
LOC103032051 NA coding downstream 140607 20872316 ~ 20874119 (+)
LOC111193556 NA coding downstream 145200 20876909 ~ 20879031 (+)
LOC111193555 NA coding downstream 152839 20884548 ~ 20886467 (+)
G11891 NA non-coding upstream 34734 20446394 ~ 20488144 (+)
G11856 NA non-coding upstream 375825 20058536 ~ 20147053 (+)
LOC111193550 NA non-coding upstream 459410 20046827 ~ 20063468 (+)
G11703 NA non-coding upstream 853634 19666960 ~ 19669244 (+)
G11678 NA non-coding upstream 986498 19535675 ~ 19536380 (+)
G12165 NA non-coding downstream 260161 20991870 ~ 20992084 (+)
LOC103030577 NA non-coding downstream 325044 21056753 ~ 21162746 (+)
G12187 NA non-coding downstream 382146 21113855 ~ 21116020 (+)
G12242 NA non-coding downstream 439396 21171105 ~ 21171318 (+)
G12297 NA non-coding downstream 532218 21263927 ~ 21309318 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 1078047 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 3379530 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 4222211 16224721 ~ 16300667 (+)
ddx42 ddx42 other upstream 4487594 16011694 ~ 16035284 (+)
G10879 NA other upstream 4562500 15952846 ~ 15960378 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other downstream 231340 20963049 ~ 20990064 (+)
trnan-guu NA other downstream 244495 20976204 ~ 20976277 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 728141 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 1569287 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1741943 22473652 ~ 22517780 (+)

Expression


Co-expression Network