LOC103033418 (ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523)


Basic Information

Item Value
gene id LOC103033418
gene name ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20994106 ~ 21053855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674940.1
TCATTGTAGCAGTGGGGAGGGGATGAGAGCTCGGTCAGCTGAAACACTCTGGTGTCTCTAATGTCTCTCAGTCCCGCTGCGCTGCGCTCTCAGAGATCTCCGGCTCTGTATGGGAGGCTGAGGGagaagctgaggctggagcCGGAGCTGAGAGAGAAGTATGGCCGCGAAGGAAGAGCTGTACGCCCGGATCATCCCCCGCAGACTCCGCCACGGCCGGGCCAGCAGCGCCGCCAAGCAGGGCTCTCCGCTGGACGTGCTGCTGTCGATGGGCTTCCCCCAGAGCAGAGCGTTAAAGGCGCTGGTTTCTACAGGAGGCAGGAGTGTGCAGCTGGCATGTGACTGGCTCTTTTCTCACGTAGATGACCCCTTCTTGGACGACCCCTTACCCAGAGAGTATGTGCTATATCTGCGCCCCAGCGGCCCCCTTCAGAACCAGCTCAACCACTTCTGGCAGCAGTCCAGGCTGACCTGCGGCAAGAACAAAGCCCACAACATATTCCCCCACATCACGCTCTGCCAGTTCTTCATGTGTGCAGACAGTAaggtggaggctctgtgtggaGCTCTGCAGTCCACAGTGATCCAGTGGAGAGGACGCTTCCCCAGCCCCCTGCCTCTCGAGCTCTACACCTCCGCCAACTTCATCGGCCTCTTTGTGGAGGAGCAGGTGGCCGAGACGTTGAAGAAGTTCGCCTCAGACTTCGCTGCAGAAGCTGCTTCTAAAGCAGATGTTCATGTGGAGCCCCATAAGAAGCAGCTGCACGTGACTCTAGCCTACCACTTTCCCAGCTGTCATTTGGCTTCACTGGAAAAGCTGGCGAGAGGAATTGAGGTCAAGCTGGGCTGCGATTGGCTCGCCGTCCTTTTCTCTCGGGACATTAGATTTGCAAATCATGAGACTCTGAGGGTGATGTACCCCTATGTTCCTCAGAAtgaggatgagctggagcttgtACCAGGTGACTTTATCTTCACATCACCAGTGGAGCAGATGAGCACCAGTGAGGGCTGGGTTTATGGCACTTCTCTAAACACAGGGATTTCTGGGCTTCTGCCTGAAAATTATGTGGGTCGGGCTGATGAATGCGACACATGGGTCTTCCACGGGTCGCACTCATTCTTCAGTGCCTCACCTTCAGAAAAAAGCAACAAAGAGAGCAGAACATTGGATGGGCTACTCAGCATTCAGTGCCTGGATAACTCAAGACCAGGGGATTCATCCATCCTGAGTTTGGTCTGCCAACCTATGCAGgtaCTCCGAGTCAACAGCCACTCTCGCTCTCCTAAAAGGACGCTCTTTGTGTGTCGCCATGGAGAGAGGATGGACGTGGTGTTTGGGAAACACTGGCTCTCACAGTGCTCTGATGCTAAAGgCAGATATGTGCGAACTAACCTGAATATGCCTCCATTCCTCCCTGCCTGGGGTGGAGGACACAGGGATTATGACATGGACGCTCCTATAACCGTGTTTGGAACCACTCAGGCCAGAACTGTGGGTGAGGCTTTACTGGAGAGCAACACTGCCATTGACTTCATCTATTCCTCGCCGAGCCTCCGCTGCGTTCAGACAGCCCACGAGATCCTCAAAGgTATGCAGCTGGATGGAAAGCTGAAGATACGAGTGGAGCCAGGCCTGTTTGAATGGACCAAATGGGTGTCAGGGTCTTCTCTACCCTCATGGATCTCTCCCTCGGACCTTGCTGCAGCCAACCTCAGTGTGGACACAACCTACAGACCTCACATAGCCATTACTAAACTAAGCGTGGCCGAGTCCTACGACACCTACATGAGCCGGAGCTACAAAGTGACCAAAGACATCCTGTCAGACTGCAAAAACAAAgGTAATAATGTTCTGATAGTGGGTCATGCATCATCTCTGGAGGCCTGCACCCGCCAGCTCCAGGGCCAGACCCTGCGCAACTCCAAAGACTTCGTCCAAGTAGTGCGGAAGaTCCCGTATCTGggtatgtgtgcatgtgaggaGCAGGATTCAAACTCGTGGAAGCTTGTGGACCCGCCCATCCTCCCCCTCACCCACGGACCCAATCACAGCTTCAGCTGGAGAGAGACGCTACAGCAGGAATGACCCTCACTCACCCGTCCGTCAGCGGCTCTGAGTGACggacacctcacacacactggaAGCATGCGGGCCATGTGCTGGCCGCTTTGCAGAATGGACCCAGGCTGTTCGCGCCACTTTGCGagctaaaaaaacactgacaggactttttattttttctaaaagttTTTTAGGCCATATTTTATGTTTACACGTGGAATGGAGAATGGTGGTTTGATGGACAGATGTTGTGTAGATGAGTAAAGTGGTTGAATTGAGAGGGGGACACACTGCAGGCTAATCTCAGGGCATTGGCAATCACTCTTTAACAGGTGAAGCACAGGTCTAACGGCACAATCACCACAATTAACTTGTTTTGTGGACAGAATAGCATCTCTAACCTACAGTACAAAGCAGCAGGTGTATTGTAGCTGCTGTGGTTATTAATATACAGCGCTATTGTACAGGtctggacaaaaaaataagagagcacttaaaaatgatgagtttctttgattttaccaaattgaaaacctctggaat

Function

symbol description
ubash3bb Orthologous to several human genes including UBASH3B (ubiquitin associated and SH3 domain containing B).

NR:

description
PREDICTED: ubiquitin-associated and SH3 domain-containing protein B-like isoform X1

GO: NA

KEGG:

id description
K18993 UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674940.1 True 2608 mRNA 0.53 14 20994106 21053855

Neighbor

gene id symbol gene type direction distance location
LOC103030893 arcn1,LOC108436511,LOC108278096 coding upstream 33870 20951343 ~ 20960236 (+)
pih1d2 NA coding upstream 85299 20902276 ~ 20908807 (+)
tmprss5 tmprss5,LOC107713421,LOC107717179 coding upstream 93259 20852182 ~ 20900847 (+)
nkapd1 LOC103031305 coding downstream 490501 21544356 ~ 21549087 (+)
LOC103031614 ppp2r1b,LOC104918016 coding downstream 521095 21574950 ~ 21597352 (+)
LOC111194279 NA coding downstream 711103 21764958 ~ 21827382 (+)
ttc12 NA coding downstream 790910 21844765 ~ 21905395 (+)
LOC111194280 NA coding downstream 865363 21919218 ~ 21931304 (+)
G12165 NA non-coding upstream 2022 20991870 ~ 20992084 (+)
G12038 NA non-coding upstream 226707 20727543 ~ 20767399 (+)
G12039 NA non-coding upstream 238826 20728643 ~ 20755280 (+)
G12034 NA non-coding upstream 283428 20671034 ~ 20710678 (+)
G12027 NA non-coding upstream 374129 20562773 ~ 20619977 (+)
LOC103030577 NA non-coding downstream 2898 21056753 ~ 21162746 (+)
G12187 NA non-coding downstream 60000 21113855 ~ 21116020 (+)
G12242 NA non-coding downstream 117250 21171105 ~ 21171318 (+)
G12297 NA non-coding downstream 210072 21263927 ~ 21309318 (+)
G12307 NA non-coding downstream 258801 21312656 ~ 21313513 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 4042 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 17829 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 1549275 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 3850758 17139425 ~ 17143348 (+)
ccdc47 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 other upstream 4693439 16224721 ~ 16300667 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other downstream 405995 21459850 ~ 21463649 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 1247141 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 1419797 22473652 ~ 22517780 (+)
G13067 NA other downstream 2800143 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 3646987 24700842 ~ 24722676 (+)

Expression


Co-expression Network