sorl1 (sorl1,LOC107717255)


Basic Information

Item Value
gene id sorl1
gene name sorl1,LOC107717255
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21317501 ~ 21450195 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674963.1
TTCCTCGCCGAGaagaaacacaaacatacacaaacatggCGACACAGCAGACGTGCAGGATGCTCTCGCTCCGCCGCTGCGCTGTTTTTCTGCTGCTCTGGTTCGTCCCCGGCTCCTTTTCGGACACGCTCCGTCTTCACCAGGACCCGCGCTTCATGCTGCCCCAGGACCGGGGCTTTTCTCTGGTCAGCGCCTCCGCCGGGCTCTTGGAGAGCTCAGCGGGGGGAGCGGCTGGAGCATACCCCGGGCAGAGAGCACGCAGCCGGCGGAGCGCCGCCGAGAGCCCCGCCATGACCAGGGTCTACGGGCGGGCCAACCTGAATGATTCACATAATCAGATGGTCGTCCACTGGGCTGGAGAGAAGAGCAACGTCATTGTAGCTTTAGCCAGAGACAGCGTTGGAGCAGCTGACCCCAAGAGCAGCTCGGTCTACGTATCCTATGACTATGGAACCACCTTCAGCCACATATCGGAGATGTTTAATCTGTCTGGTGGGAAGGAGAACAGCAAGCAGGTCATCTCCCAGTTCTACCACAGCCCTGCTGACAACAAACGGTACCTTTTTGCGGACACCACCAACAGTTACCTGTGGAACACTTTTGACTTCTGCAAGAGCGTCCAGGGCTTCTCCATCCCTTTCAAGCCCACAGATCTGCTCCTGCACAGCAAGAGACCCAACCTGGTGCTGGGCTACGACAGTTCCCATCCTAATAAGCAGctttggaAATCAGATGACTTTGGCGAGACGTGGGTGCTGATTCAAGAGCATGTCAAGTCCTACTTCTGGGGAGTGGAGCCGTACGACAGCCCCACCACAGTGCTCGTCCAGAGACACGAACCTCAAGGCATCTCCAGCATCCTCAGCAGCACCGACTTTTTCCAGAGCGAGCAGAATCGCCGCATCATCCTGGAGAGGGTGGACAGTTTTCAACTCCGAGACAAATACATGTTCGCCACGACCACCAGGccgCTGCTGGGAAGCCATGAGCCACAATCTGTCCAACTGTGGGTCTCCTACAACAGACAGCCAATGAGGGCCGCCCAGTTTAACACCCGCCACCCAATCACTGAGTACTACATAGCGGATGCTTCAGAGGatcaagtgtttgtgtgtgtgaaccaCAACAACAACGTCACACACCTGTACATCTCAGACACTCAGGGCCTggccttctctctctcgctggaGAACGTTCTGTATTACAGCCCTGAGGGCTCCGGCAGCAACACCCTCATCAGGTACTTTGCCAGTGAGCCGTTTGCTGATCTGCACCGTGTGGAGGGTCTGCGGGGGGTGTTTGTTGCTACGCTGATTAACGGTTCTCTCAGTGAAGATAACATGCGGTCGGTCATCACCTTCGATAAGGGGGGAACCTGGGAGCTGCTGCAGCCCCCCGCTGCCGACAGCCTCGGAGGAACTATTAACTGCCAGatctcTAAGGGCTGTTCTCTGCACCTGGCTCAGCGCTGGAGTCAGCTGTTGAATATTCAGTTGAGGAGGATGCCCATCCTGTCTAAAGAGTCGGCACCTGGCCTCATCATGGCAACAGGATCTGTGGGGAAGAATTTGGCCAACAAGCCCAATGTGTACGTGTCCAGCAGTGCAGGAGTCCGGTGGAGAGAGGCTCTGGCTGGTCCTCACTTCTACACCTGGGGTGACCATGGAGGCATACTGATGGCCATCAGCCAAGGCGGCTCCACCAAAACACTCAAGTTCAGCACTAATGAAGGTGAGACCTGGACCGAGTTCCAGTTCTCTGAGCAGGAGGTCTACGTGTACCAGCTGCTGACGGAGCCGGGAGAGAAGAGCACCATCTTCACCATCTTCGGCTCCTACGCCGACCAGAAGCACAGCTGGCTCATTCTGCAAGTCAATGCCACCGATGTGCTCGGCGTGCCGTGCACTGACGGAGACTATAAGCACTGGTCCCCGTCTGATGAGCGTGGGAACGGGTGTCTGCTGGGTCGAGAGCTGGTGTATAAGCGGCGCACACCTCACGCCACCTGCTTTAACGGCGAGGACTTCGACCGCCCCGTCAGTCTGTCCAACTGCTCCTGCACCCGGCAGGATTACGAGTGtgaTTACGGCTTCATGCTGACGGAAGACCTGTCTTTGCAAGTTTGCGTCCCTGATCCAGAGTTTTTAGGCAACCTGTATGCCCCTCCTGTGCCCTGCCCGGTGGGCACGACCTACCGCCGCAGCAAAGGGTACAGGAAGGTGCCTGGGGACAGCTGCAGTGGTGGAGATGTGGAAGCCAGGCTGGATGGAGAGATGCTGCCGTGTCCTGTTGGAGAGAGTAATGAGTTTATTCTCTATGCGGTGAGGAACTCCATCCACCGGTATGATCTTGCCACTGGTGCTGACCAGCCGCTGCCTCTCTCTGGGCTCCACGAGGCGGTGGCTCTGGACTTCGATTACGAGAAGAACTGCCTCTACTGGGCCGACATTTCACTGGATACTATTCAGagGCTCTGTTTGAACGGCAGCACCGGGCAGGAAGTGATCATTAGGAAAGACCTTCAGAACGTGGAGGCTCTGACCTTTGACCCCATCAGCAGACTGCTGTACTGGGTGGACGCTGGTGCTCAGAAGATTGAGATATCAAACTCTGACGGAGATCTGAGACGCACTCTGGTGAACTCCTCAGTGCTGGAGCATCCTCGAGCTCTGGCCTTATTATCTGGAGAGAGTCTGATGTTCTGGACGGACTGGGGGGATCAGGCAGCGGGGGTGTACCGCAGCTGGATGGATGGCTCTAATGTGGAGCGTATTGTATCAGACGGTGTTCGATGGCCGAATGGCATCACGGCTGATGATCACTGGCTGTACTGGACTGAGGCGTACGGGGACCGTATTGAGAGAGCTGATTTCAGAGGGGGGCAGCGCACTGTGCTGATGGAGGGTCTGCCTCATCCCTACGCTATAGCGGTCTTTAAGAATGACCTGTACTGGGATGACTGGTCCAGAATGGGTATTTTCAAGGCCCCCAAATCAGGCTCCTCCAACAGCGAGCTGCTGGTGGGCAGACTGACGGGCGTGATGGACCTCAAGATCTTCTACAAAGGCAAAACTAGAGGTCACAACGCGTGTGCCGACCAGCCGTGTACCCTGCTCTGCCTGCCTCAGCCCAACCACATGCATAGCTGTGTGTGTCCAGACGGAGTCGCCTCCACCACGCTGCCCTCAGGAGAGATTCAGTGCCAGTGTCCCGCTGGGTATCAGCTCCACAACAACAGCTGCGTGAAGACGGAACACACATGCCTGCCGAATCAGTACCGCTGCTCCAACGGCAAGTGCATCAGCAGCATCTGGAAATGCGACAGCGACAACGACTGTGGAGACATGAGTGATGAGCAGGAGTGCCCCACCACCTCTTGTGACCCTGCTGTGCAGTTCCGCTGCGTCGGCTCGGGATCCTGCATCCCGCTGGCCTTCAAGTGTGACCACGAGGACGACTGCGGCGACAACAGTGATGAGGACCACTGCGAGTCACACCAGTGTGGACCAGGGGAGTTTACTTGTGCAAGAGGTGTGTGTATCCGTGATGCCTGGCGCTGTGATGGTGATAACGACTGCAGGGATTGGTCGGATGAGGCCAACTGCACTGTTGGCCACCACACATGTGAGAGCAGCAGTTTCCAGTGTCATACTGGTCACTGTATTCCTCAGCGCTGGGTGTGTGACGGTGATGACGACTGTCAGGACGGCTCTGATGAGGAGCCCAGTCACTGCGAAGGTGAACACTGTAATGGCTTCCTGTGTTCCAACGGCACCTGTCTGCCAGCCAGCGCCCACTGCAACGGCCTGGAGGACTGCCCAGGGGGCACGGACGAGCAGCACTGCGATCCGCTGTGCACGCGCTACATGGAGTTTGTGTGTAAGAACAGAGCTCAGTGTCTGTTCCAGTCTCTGGTGTGTGACGGCACAAAGCACTGCGCCGACGGTTCGGACGAAGACGCCTCTTACGCAGGATGCTCCACCCATCCTGAGTTCGAGAAGAAGTGTGATGCCGACAACTTCCAGTGTGCtaacggtgtgtgtgtgagcctgGACTGGAAATGTGATGGCATGGACGACTGTGGTGACTACTCAGATGAGGCTAACTGCGttTCCCCAACTGAGGAGCCAGGCTGCTGGAGATACTTCCAGTTTGCATGTAAGAACGGCCGCTGCGTGCCCACTTGGTGGAAATGTGACGGAGAGAACGACTGTGGAGACTGGTCTGATGAATCACAGTGTACAGatgGAATCTCACCGCACACCTCTTCTCCTGGTCCCGTTTCCTGCGCTCCTAACCGCTTCCCCTGTGGTACTGGAGCGTGTATAGTGAATAACTGGGTGTGTGATGGATATGCAGACTGCCCCGATGGCAGTGACGAAGTGGGCTGTCCCACAGcttCCAACAGCTCTGTGACTCGCTCCCCCCTGTTCACCACTGCACCCGAGCCCGCGGGCCGCTGCACCAGGGGGCAGTTCCAGTGCCGGAAACCTCCCACCTGCATCCCGGAGTGGCAGCGGTGCGACGGACGCAGACACTGCCAGGATGGCTCAGATGAGACCAACTGTCcTACTCACGGTCCTCTGACATGTGTGAACGGCACTCTGTGTGCTGACGGGGAGGCGTGTGTGATGGACTCTGAGAGATGTGACGGTTTCTTGGACTGCTCAGACCACAGTGATGAAGATAACTGCACTGCCGACTCTCTGGTTTATAAAGTCCAGAACCTGCAGTGGAGCGCTGACTTCTCCGGCGCCATCACGCTCACCTGGTCCCGACCCAAAAACATGCCCCCTTCCACCTGCTCCTTCATCATCTACTACAGGCTGGTGGGGGCTCAGCAGTGGACCACCATGGACACCCACAGCAACAAGAGCAGCTACACACTGACTGTACTGAGACCAGACACCACCTACCAGGTGAAAGTGGTGACGCAGTGTCTCAGCAAGCAGCACAAAACCAACGAGGTGCTGACCCTCCGCACTCCTGAGGGCTTGCCGGATCCTCCTCAGGGGCTGCAGCTGGGCTGTGATAAAGGAGAGGACGGGACTGTGCTTTGCTCCTGGAGTCCCCCGGATAACACTCACGGCCTCATCAGAGAGTACATAgTAGAGTACAGTGAAAAGGGCAGTTCTGAGTGGTTTTCTCAGAGAAGCACCACCACCAGTACCACAGTCAGGAGTCTTCAGCCCAGCTCCCTCTACAGGTTCAGGgtggcTGCAGTGACCAGTAGAGGAGTGGGAAACTGGACGGAGATCAAATCCGTCGTACCTCAGAAAGCTCTGGCACCTCCGGTCACAAAGATCATCAGCATCACAGAGGATACTCTCACTCTGTCCATCAGCTCTGATTATAAAGTTAAAAACTATGTAGTGCTCCTCAGCTGGGTCTTCGAGAAGCATGTGAAAGAAAGCAGGAACTACACAGTCTCAAAAACTTTAAAGGCCACCAATCTGACCGCAGGTACTCTGTATGAGGTGTCCGTGTGGTCCCACACCACTGATGGAGACAGTCCCACCGCCCCGTTCCGTCTGCAGACCGGCGGCTCTCAGCCAGCTCAGCCCTTACTGAAGGCCCGCGCCCTGAACCAGACTGCTGTGGACTGCAGCTGGACCGGACCTCCAGCACAGatgtATGGTGTGTTTTACGCCACCTCCTTCCTGGATCTTTACCGCCGGCCGCAGAGCGTGAACAGCAGCGGCAGCCTGATCGTCTCTGTGGAGAATGATGAGCAGTACCTCTTCCATGTGAGGGTAATCGAGCCGTATCTGGGACCTCCGTCTGAGTCTGTTGTTGTGAAGATGATTCCTAATGAGAGACTTCCTCCTCGAAATCTGCACAAAGTGAGAGTGGAGAAGACCCAGGCCACGCTGAAGTGGCAGCCGCCATATGACACCCCTGGTGAACCTCTGACGTATGTGGTGCACGTGAGAGACGCGGTGAGGAAAACTGACCGTGATTATAAAGTGACGACTCAGAACAACACAGTAGAGTACTGTCTGAAGGGCCTGGAGCCCGGCGGACGCTACAGCATCACCGTCCGGCTGCGCAACATGAGCAAGGAGGCCACCTACACCCTCAACACAGTTCCTCTACCACCACCTGAAGCTCTCAAAATCCTGGCTGAGAATAACCGTGTGTTCCTCTTCTGGAAGAGTCTGGCTGTAAAGGAGAAAAGCTTTAACGAGAGTCGGGGCTATGAGATCTATGTGCATGACAGCGTGAGTAACTCCACCACGTGGCTCGGGAACACCACAGAGACGTTTTTCTGGATCAGCAACCTGCTGCTGGGACACAACTACACGTTCTCAGTGAGGGCCAGCTGCCTGGTGAGCAACCAGCTGTGTGGAGAgtctgcagtgctgctgtatGATGAGCTGGGGTCCGGAGCAGCAGgtaTTAATGACCCTGCAGCTCATTCAGCTCGTTCTGGTGACATGGCTGCGGTGGTGGTTCCGGTCCTGTTTATTCTGCtgctgggtgtgtgtggggggctGGTGGCTCTGTATGTGCGGCACAGGCGTCTCCAGCACAGCTTCACCGCCTTCGCCAACAGCCACTACAACTCCCGCCTCGGCTCCGCCATCTTCTCCTCCGGAGACGAGCTGGGTGATGACGACGAGGATGCACCAATGATCAGTGGCTTTTCAGACGATGTTCCCATGGTGATAGCGTAGTGAGGCTCTCAGTTCCTGAAGATCACCCTCTActccatctatctctctatctatctatctctttctctccctccctccatccctccctttCCCCATCTTACCTCGTTCTTCAGGTGTGTCCTTCCCGGCACACCGTCCCGCCCCCTCCCGCTTAGGATTTCAGGATCCAGAGGAAGAAAGGAGAAAACAAAGTGAAagagatattttttaaatctaagaTGCACTTTTTTCGGATGCgcaataacttatttttttatagatattATACTGTTTGTGGGTGATGGACTCGGTaggtgagagagggaggagaaaaaaaaaacgacaaaagAAAACGGAAGCGAAGCTGTGAAGAAGTTTATCAGCTGGACTCAGTGAACAGGGAAAAAAGACCCTTTAGTGAATCACCGACTCACAAACACACTGGACCATTGCGTGTCTTAAAAAGCCAAAATGAGCACCTATACACCGGATCATCCagcgcaaaaaaaacaagaacaaaattatatatacatacatatatatataaataaattacaaatggAAATAAATGTACGAATGAATGCTgatctcatttaaaacaaacaaaaaaaacacacaaaagggaAAGAGGTACTCGGGCTGTTGACAGTGAATTGCACAGAATTTTTGATTATGTATAATTTTGTTGTGTCACTTTGTCAGTAGACATGTAGATTAGACCATGGTACCTtttaacattatcattattttctaattttcttttttttgtttttaatcgtCTGTTCAACATATCTCTTCAGAACCTGTACAGGTACATTATTTCTCTGattgttgaaaatgtgaaaaacagttatttttcattattttctggctataattctaaaaaaaaa

Function

symbol description
sorl1 Predicted to be involved in post-Golgi vesicle-mediated transport; protein retention in Golgi apparatus; and protein targeting to lysosome. Predicted to act upstream of or within endocytosis. Predicted to be located in several cellular components, including Golgi membrane; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus. Predicted to be integral component of membrane. Is expressed in central nervous system; hatching gland; mesoderm; and somite. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human SORL1 (sortilin related receptor 1).

NR:

description
PREDICTED: sortilin-related receptor

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24498 SORL1; sortilin-related receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674963.1 True 7546 mRNA 0.54 48 21317501 21450195

Neighbor

gene id symbol gene type direction distance location
LOC103030049 NA coding downstream 98404 21213233 ~ 21219097 (-)
dixdc1 dixdc1 coding downstream 373521 20912594 ~ 20943980 (-)
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding downstream 877952 20067514 ~ 20439549 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding downstream 1533861 19777857 ~ 19783640 (-)
acad8 acad8,LOC107582571 coding downstream 1544885 19764372 ~ 19772616 (-)
bco2 LOC108436497 coding upstream 6936 21457131 ~ 21465432 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding upstream 24217 21474412 ~ 21482404 (-)
LOC103030984 NA coding upstream 33376 21483571 ~ 21491122 (-)
LOC103030662 LOC108436499 coding upstream 46403 21496598 ~ 21511206 (-)
LOC103034230 NA coding upstream 67812 21518007 ~ 21530745 (-)
LOC111193576 NA non-coding downstream 796 21312672 ~ 21316705 (-)
G12203 NA non-coding downstream 355742 20960778 ~ 20961759 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding downstream 388284 20840206 ~ 20929217 (-)
G12120 NA non-coding downstream 562214 20728643 ~ 20755287 (-)
G12118 NA non-coding downstream 585581 20720642 ~ 20731920 (-)
G12400 NA non-coding upstream 82285 21532480 ~ 21538280 (-)
G12405 NA non-coding upstream 119763 21569958 ~ 21570232 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding upstream 124763 21574958 ~ 21578572 (-)
G12396 NA non-coding upstream 131367 21581562 ~ 21599012 (-)
G12739 NA non-coding upstream 235017 21685212 ~ 21688855 (-)
trnak-cuu NA other downstream 342347 20975082 ~ 20975154 (-)
G11917 NA other downstream 1235059 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1515178 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2043647 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2205929 19108713 ~ 19111572 (-)
G12767 NA other upstream 543612 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 2089062 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2334276 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2453988 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3600765 25050960 ~ 25056101 (-)

Expression


Co-expression Network