bco2 (LOC108436497)


Basic Information

Item Value
gene id bco2
gene name LOC108436497
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21457131 ~ 21465432 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674978.1
CTGAAGGAGGCTCCTGCTGAATATAAGACAGCCCTGACAGCACAGTGAGTTAACACAGCCTCTTTCAGACACAGATCTGAATCAGCATCACCATGAAGAGCAGCAAACCAACCAGCAACACCATGAAGACGGGAAATCTGAATGAGAAGAACTCCAAgtcaaagaaaaagaagcagtatTTCTCAGATGTGCATGGTTTACCCAGCATTGAAAAGCTGGTGTGTTCAGTAGATGACACCCCACAGCCCATCTCCACCAGAATCAGAGGAAACGTTCCTTCATGGATTCATGGAAACCTCCTCAGGAACGGTCCTGGAAAGTTCGAGTTTGGGAACACACAATTCAACCACTGGTTTGATGGAATGGCTCTTCTGCACCAGTTCAGAATTGAAGGAGGAACAGTGACCTACATGAGCCGCTTCTTGAACAGCGACTGCTACAAGATGAATGCTGAGAGTGACCGTATCGTGGTGTCTGAATTTGGCACACTTGCCATGCCAGACCCATGCAAGAACTTCTTCCAGCGCTTCCTCTCCCGCTTTGAAAAGCCACAACCAACAGACAACGCAAGTGTGAGCTTTGTCCAGTATAAAGGAGACTACTATGTCAGCACAGAGACCAACTTCATGCACAGAATTGATCCTGAGACCCTGGAGACAAAGGAAAAGGTGGATTGGAGTAAGTTTATTGCCGTCAATGGAGCGACAGCTCATCCTCACACAGATCCTGATGGAACTACATATAATATGGGCAACTCTTACACATCTAAAGGTGCGtattataatatcattaaagtgcCTCCAGAGAAGGTCAGTGCAGATGAGACCCTGGAGGGAGCTACTGTTATATGCACTATTCCATCTGGGGACAAGACTAAGCCGTCATACTACCACAGCTTTGCCATGTCAGAGAACTATGTGGTGTTCGTTGAGCAGCCCATCAAAATTGACCTGCTGAAGGTGGTGACAGGGAAGCTACGTGGGAAAGGCATCAGTGATGGGGTTTACTGGGACTCCAAACAGCAGACAGTCTTCCATGTGATCAACAAGCACACTGGAAAGCAAAGTCCCATCAAATACTACACCCAGCCACTGTCCACCTTTCATCAGATCAACTGTTATGAGGAAGATGGCTTCATTATCATGGACATGTGCTGCTCTGATGACGGCAAAGCAATCAACAATTTCATGATTCAGAATCTGAGGAAGACTGGGGACAGCCTAGATGAGGTTTACAACACAATTTGCAGAATATTTCCACGCAGATTTGTCCTGCCACTCCATGTAGGGAAAGACACACCCTGTGGGCAAAATCTGAACACCAGACCAGACAGCCCAGCAACTGCCATCAAGACAGGCAAAAACAAGgTGCTCTGTACACATGAAGACCTCCACAGTGATGATCTTCATGAATATGGCGGCCTAGAATTCCCACAGATTAACTATGCAAAGTGCAACACCCATCCCTACCGCTACTTCTACGCATGCGGCTTTAGGCACCTGGTTGGAGACTCCCTCATAAAGATGGATATTCAAGACAAACAGATGATGGTTTGGAAGCAGCAAGGCTACTACCCCTCAGAGCCTGTTTTCGTCCCTTCACCTAATGCAGTGCAGGAAGATGATGGAGTTGTTCTGTCTGTGGTCATAACTCCCAATAAGgacAGGAGCACTTTCTTGTTGGTTCTGGACGCCAAAAACTTTGAGGAGCTGGGCCGAGCTGAGGTGCCTGTCAACATTCCCTACGGCTTCCACGGAGCTTTTCAAGCAGGAATCTAAGATGTAATTCTGCCCACACACAGagctccaaacaaacaaacaaatgttaaaatatatctcTATTATTGTCTGCCAATACTCTACACAGTGGACACAGTGCATGCTGtacatttattgtttattgttcatcAGATTGTAGACCTGTTTTTGCTCACATCTGTGTTAAATGCTTGAATGAACCGCCattgaaaattattattatacaaatatCTTTATTGGAATAAAAGTTAGACAAAACTTCTGTA

Function

NR:

description
PREDICTED: beta,beta-carotene 9',10'-oxygenase-like

GO: NA

KEGG:

id description
K10252 BCDO2; beta,beta-carotene 9',10'-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674978.1 True 2023 mRNA 0.45 12 21457131 21465432

Neighbor

gene id symbol gene type direction distance location
sorl1 sorl1,LOC107717255 coding downstream 6936 21317501 ~ 21450195 (-)
LOC103030049 NA coding downstream 238034 21213233 ~ 21219097 (-)
dixdc1 dixdc1 coding downstream 513151 20912594 ~ 20943980 (-)
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding downstream 1017582 20067514 ~ 20439549 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding downstream 1673491 19777857 ~ 19783640 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding upstream 8980 21474412 ~ 21482404 (-)
LOC103030984 NA coding upstream 18139 21483571 ~ 21491122 (-)
LOC103030662 LOC108436499 coding upstream 31166 21496598 ~ 21511206 (-)
LOC103034230 NA coding upstream 52575 21518007 ~ 21530745 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding upstream 144722 21610154 ~ 21699039 (-)
LOC111193576 NA non-coding downstream 140426 21312672 ~ 21316705 (-)
G12203 NA non-coding downstream 495372 20960778 ~ 20961759 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding downstream 527914 20840206 ~ 20929217 (-)
G12120 NA non-coding downstream 701844 20728643 ~ 20755287 (-)
G12118 NA non-coding downstream 725211 20720642 ~ 20731920 (-)
G12400 NA non-coding upstream 67048 21532480 ~ 21538280 (-)
G12405 NA non-coding upstream 104526 21569958 ~ 21570232 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding upstream 109526 21574958 ~ 21578572 (-)
G12396 NA non-coding upstream 116130 21581562 ~ 21599012 (-)
G12739 NA non-coding upstream 219780 21685212 ~ 21688855 (-)
trnak-cuu NA other downstream 481977 20975082 ~ 20975154 (-)
G11917 NA other downstream 1374689 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1654808 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2183277 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2345559 19108713 ~ 19111572 (-)
G12767 NA other upstream 528375 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 2073825 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2319039 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2438751 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3585528 25050960 ~ 25056101 (-)

Expression


Co-expression Network