LOC103032877


Basic Information

Item Value
gene id LOC103032877
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22179416 ~ 22191537 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675114.1
cattaggactccccctatcactagtgatgaacCAAAAATGATACAAGAATGCACTGATTGAGTTGGAGGAGTTTAATGTAAAAACGCTGTACGACAAATTAGAGGATCAGAATTTACACCTGGCATCACAGCTGGCGAAGCATCGCAAAGACACGCAGGAGTTCTACAGGAATATGTGCCAGCAGACCGACGCCCTGCGGGAGACCTTGGAGAATATGGAGCCTTCAAAGCGGATCCAGTGGAAGAAGATTATGGCCAGTGAGGCACAAGCTAAACAAGAATCCATTAGAGTGGAGCCGTGGATGGGTCTGATGGAGGTCGTTCAGAGATCATTGGAGGCGGTGCTGATCCGGCTGAGTGAAGAGACCTATCAGCAGCCAGAGAGCACCGTGACCGGCAGCCACAGAGACACCAGAGAGAGCGGAGTCCACACAGGATACACCCAGATTTCTTCAGCTGATATGATTGAACTGAAGACAAGACCGGACACAGAGGCAGCATCTTCTGATCCAGTTCCCCAGTCCAGTACAGCTCCCTGTGTGAGTGAGGAGGACCTGGCAAAGCTTTTGGCCCTGACTCCCCTCACTAAAACTCTGCAGGATATACAGCAGTCCCTTCAAGCACTGAACGATACGCCCCACGCAGAAGAAGAACCTAGAGCATCATCTGAGGACACGGAGGAGAGGCAGCAGGCGCACCTGATCCCCGTTGCCCTTGACAACCTGTCTCCACGGAGCTTCGCTGTCTTCCTGTTTGGTTGCCATGTAGTGAGGCTGCTGAGCCGAGCCTGCGGCTTCCCCGCCGTGATGCTGCTGCTGGCTAAAACCCTGCCGGTTACTCAaaccgactccctgctgaactACTGTAACCGAGAGTTTTACTACGACACATCCAACCAGATACTGTACATCCTCCACAGCAACCTGCAAAACGCCGGACACTTCATCTCTGTCCTCTTACACGCTCTGGCTTATATTACTTCAGGCTCTGCTCCTCGAGACTTCATCAGATCCCTCCACCTGGCTGTATCTGCTCTGAGCTTGCAGTTATTCCATCTCTCCTTCACTCAGGAGCAGCAGGAAGGAAAGATGGATGAAGAGAGATCACAGCTTGCCTTTGGGACGTTGGTGGAGGACTTCCTCAGTGTTAAAGTTTCTACTGAAACTCAATTCACCCCAAGTCTACTGGCTGAAAGGCTCCAAAAGTACAAGTACTTCAAGTTGGAGCAGCTCCTTCAAGAACTGAAACCACCTCCATCGAGCCGACCCACAGAAGGTTCTAGCCCCACAAATCTCAAACTCCCGGTGCAGATGCTTTGTGTGGAGCAGGAAATCCAGCACCTTAATGAGGTTTACCAGCAGCTCAGCTCCCAGCTGcacagaagaacacacacactcacacacacacacacacaccgcccgCTGGAGCAGAGCCAGACCCAGACCCAGCTCAACAAAGGCCTTCAGgaGCAGGTGTTGATGTTGAAGCTCCAGCAGGTCACAGTAGAGCAGAGACTGAGGGAGATGAAGGAGAGGTTGAGTAAACTCAGCTCAGATAAAGAGCGATCTGAGCGAAATGAACAGTCCGTGTCTGAAAGCACAGAGCAGCAGATACATAAAGACAGCCTGGCcttcagtaaacacacacagctgaacaatGGAGCCGATAACCAGACAGACGCCAGCGAGCAGCTCCCCAGCAAGAAACAACACAGCAGACATATGGATGACGTAGCGCTGGAGAAAAGGATGTTATAGCCTGAGGCAGATTCACTCTTCCTGTTTTGTTCCTGTGTTGTTTACTCACTCTACTCTCATAAAATAGCAATGAATTATCTTCTATAGAGACACAGTATCatattttttggttgtttttccctttttggCACTTCTTGGGTTTTACCCTGtggtggatttttattttctggacctgagctacccacctctgtgtgtaactataggtttaaataggatctccggtggattttgtgttttacagagactatAAGCCTAGGTCAGTGTAGGCTGAACTGGACTTATTaggacattattacacatgttgtaaagtaacatatgaaattgcaaagactgttattagtgtaaaaatgtctttatttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675114.1 True 2118 mRNA 0.49 13 22179416 22191537

Neighbor

gene id symbol gene type direction distance location
scn3b NA coding downstream 14847 22141770 ~ 22164569 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding downstream 120580 21984434 ~ 22058836 (-)
LOC103032573 NA coding downstream 426521 21747420 ~ 21752895 (-)
LOC107197401 NA coding downstream 459132 21706213 ~ 21720284 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 480377 21610154 ~ 21699039 (-)
LOC103037608 LOC108277452 coding upstream 13525 22205062 ~ 22247459 (-)
LOC111194282 LOC108277600 coding upstream 67382 22258919 ~ 22269228 (-)
LOC111194286 LOC108277598 coding upstream 77686 22269223 ~ 22283102 (-)
LOC103035063 NA coding upstream 1458880 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 1575490 23767027 ~ 23775316 (-)
G12743 NA non-coding downstream 39578 22133357 ~ 22139838 (-)
G12795 NA non-coding downstream 49369 22112579 ~ 22130047 (-)
G12792 NA non-coding downstream 92053 22086817 ~ 22087363 (-)
G12791 NA non-coding downstream 113060 22065980 ~ 22066356 (-)
G12789 NA non-coding downstream 114632 22063626 ~ 22064784 (-)
G12813 NA non-coding upstream 29662 22221199 ~ 22230856 (-)
G12834 LOC108436505,LOC108278373,LOC107586299,LOC107696005,LOC107709103 non-coding upstream 164307 22355844 ~ 22365170 (-)
G12849 NA non-coding upstream 277838 22469375 ~ 22470901 (-)
G12854 NA non-coding upstream 284767 22476304 ~ 22519510 (-)
G12856 NA non-coding upstream 302531 22494068 ~ 22517783 (-)
G12767 NA other downstream 184665 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1204262 20975082 ~ 20975154 (-)
G11917 NA other downstream 2096974 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2377093 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2905562 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1347720 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1592934 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1712646 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2859423 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 3282197 25473734 ~ 25496958 (-)

Expression


Co-expression Network