c1qtnf5 (c1qtnf5)


Basic Information

Item Value
gene id c1qtnf5
gene name c1qtnf5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23767027 ~ 23775316 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675250.1
ctctctctctctctccttcactctctctctaattgACTTCTATTGCATTTCCTCTGCAGTCTGGTACAGCTCAGTTTTTCCCAGATTCTCTGCTGTAGGACGGAAAACAGGAGTCTGTCTCTGTTGTTTTCACTTTCTCTGCTCAGAAACCGTCAATCCTGCAAAGCTGTGAATAACTTATTGACTGAAAGCGATGACCCCTCTCCAGCCCTGGACTCTCGCCCTCCTCTTTGTTTTGCTGGTGAACTGTTCATATCCACTGGACGATAATAAGATTCCCAGTGTCTGCACTGGAAGCCCAGGTATCCCAGGATCCTCGGGGTTAAACGGCAGCCCGGGGCAGCCGGGGAGAGACGGAAGAGATGGGCGAGATGGACAGGTGGGAGAAAGAGGTGAAAGAGGAGAACGAGGAGAACCAGGACATCCAGGTGAGAGGGGTCTGACAGGAGACAGAGGTGATCCAGGTGAGAAGGGTCAGATGGGGCCCCCTGGAGAATGTGCTGTGGCCCCCAAATCAGCGTTTAGCGCCAAACTGAGCGAGTCCCGCAGCTCCCCGCAGGCAGTGGGAGAAGCAGTGCGCTTTAATAAGATCGTACTGAACGAGCAGGGCGATTATAACCCTGAGACAGGACGCTTCACCTGCAGGGTCCCGGGGGTCTACTACTTCTCCGTCCACGCCACCGTCTACCACTCCAGCCTGCTGTTCGACCTCATGAAGAACGGAAACGTGGTGGCCTCCTACTTCCAGTTCTTCGGGAACTGGTCCAAGCCGGCCTCGCTGTCTGGCGGCACGCTGATGCACCTCATACCTGGTGACCAAGTGTGGGTTCAGATGGGGATGCAGGAGTACACTGGATTCTTTTCCAGCTCCAAGACGGACAGCACCTTCACTGGCTTCCTGGTTTACTCAGACTGGAAAAACTCGGCTGTTTTTGCCTAGAATTCAGCGACACGCTGCTTAAAATACTCAAAACTAATGATCACCAGCTAACAGCTAAAAATAAACCAGCGGCAGAAACTCACA

Function

symbol description
c1qtnf5 Predicted to be located in extracellular region. Is expressed in eye. Human ortholog(s) of this gene implicated in isolated microphthalmia 5; late-onset retinal degeneration; microphthalmia; nanophthalmos; and retinitis pigmentosa. Orthologous to several human genes including MFRP (membrane frizzled-related protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K24212 C1QTNF5; complement C1q and tumor necrosis factor-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675250.1 True 1024 mRNA 0.53 3 23767027 23775316

Neighbor

gene id symbol gene type direction distance location
LOC103035063 NA coding downstream 42259 23650417 ~ 23724768 (-)
LOC111194286 LOC108277598 coding downstream 1483925 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 1497799 22258919 ~ 22269228 (-)
LOC103037608 LOC108277452 coding downstream 1519568 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 1575490 22179416 ~ 22191537 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 84437 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 134095 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 153499 23928815 ~ 23947378 (-)
brip1 NA coding upstream 792275 24567591 ~ 24687178 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 914759 24690075 ~ 24699460 (-)
G13311 NA non-coding downstream 12537 23753551 ~ 23754490 (-)
G13307 NA non-coding downstream 14508 23750470 ~ 23752519 (-)
G13303 NA non-coding downstream 42564 23674210 ~ 23724463 (-)
G13305 NA non-coding downstream 45958 23720584 ~ 23721069 (-)
G13296 NA non-coding downstream 56490 23610245 ~ 23710537 (-)
G13325 NA non-coding upstream 121603 23896919 ~ 23903053 (-)
G13327 NA non-coding upstream 140397 23915713 ~ 23916288 (-)
G13330 NA non-coding upstream 213619 23988935 ~ 23989467 (-)
G13331 NA non-coding upstream 217403 23992719 ~ 24071966 (-)
G13341 NA non-coding upstream 333336 24108652 ~ 24145236 (-)
LOC111193708 NA other downstream 213057 23539257 ~ 23553970 (-)
G12767 NA other downstream 1772276 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 2791873 20975082 ~ 20975154 (-)
G11917 NA other downstream 3684585 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 3964704 19785981 ~ 19802323 (-)
LOC103035686 kmt2a other upstream 9155 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 128867 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 1275644 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1698418 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1748471 25523787 ~ 25524603 (-)

Expression


Co-expression Network