ube4a (ube4a,LOC107718272,LOC107690452)


Basic Information

Item Value
gene id ube4a
gene name ube4a,LOC107718272,LOC107690452
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23859753 ~ 23895075 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675259.1
GTCGTGTGTTGATGACGCTACACGcgtatgtgtgtttatgcagGAAATGCAGCAGCGCGGATTATTAAcactattatatttaataaaacagcagcagcagcagcgggtaAACACACCGCCAGCGGGACACGGCTGGTCTTGAGCCCCTGTTTATGGAGTACATGCTCCAGTGAAATGACAGACCAGggtaataataatcagaacatcTCTGGAAACCCGTTTGCTGCCCTCTTCAGTTCCATCGCTGATGCCAAGCAGTTTGCATCAGGCCAAAAGTTACAGCAGCAAGCTGACCCACCTTCGGAAGACTCTGGGGAGAGCCAGTCTGAGTCTGATAATTCAGTGTCTGACAGCATAGAGGACAATGATGACTCTGTGGCGGAGATCAGCCGCTCGTTCCGCTCACGGCAGGAGCTCTGTGAGCAGCTCAATGTCAATCACATGATACAGAGAATTTTCCTCATCACTTTGGACAACAGTGACCCCAGTCTCCGAAGTGGTAATGGCATCCCCCCACGCTGTGTCTACCTTGAAGAGACGGCAGCAGACCTTGATGGCCAAGACTGGCTTGATATGGACACAATAGAACAGGCTATTTTCAGCAGGCTGCTTTTACTAGAACCTGGGAATCATCTCATCTACATGACTTCCTGCACTGCATCGAACCTGTCGGCCGATCGCGATGCCGGGGAGAAACGAGCCGTACCGTACCTTTATGCCTGTTATCAGCGAGCAAAGGAGGAGGTCACTAAAGTGCCAGAGAAGCTGCTGTCGACCGCTGTACGCTGTAAGAACCTGACCGTCTCCAACGCTCGCACAGTTCTGCTCACCCCGGAGATCTACATCAGTCAGAATGTGTACGAACAGCTCCTGGACCTGCTGCTGGAGGCCGTCAACGGAGCTCAAATGGAGGAGGTGGTGGAGTTTCTAGAGGAAGTGATTGTTGGTCTTTTGGCTGATCAAGAAGTGCGCTCCTTTGGAGAGGTTATGGTACCGGTGTTTGATATTTTCCAAGGCCGAATTAAAGACTTAGATCTGTGCCAGCTGCTGCTGTATTCCTATCTGGACATCTTGCTCTACTTCAGCCGACAAAAAGACATTTCCAAGGTTCTGGTGGAGCATATTCAACCCAAAGATCCAAGCAACGGACTCCAGTATCAGAAGACTCTTCTCGGCACTGTTTTGAACATTTCTTGTCTGCTGAAAACTCCTGGAGTCGTGGAAAGCCACGGCTTTTTCCTCAATCCCTCTCGCTCCAGCCCACAGGAAATGAAGATTCAGGAGTCTAATATCCATCAGTTCATGAGCCAGTATCATGATAAGCTGTACCAGATTTTGAAGAACCTGCTGCAGCAGTCCACCGAGACCCGGCACCTGCTGCTGTCCTGGCTGGGTAACTGCCTGCAGGCTAACATGGGGCGGGCCAAAATCTGGGCCAACCAGATGCCTGAGATGTTCTTCCAGATGTACGCCTCGGACGCTTTCTTCCTGAACCTGGGCGCCGCGCTGCTCAAACTCTGCCAGCCCTTCTGTCGGCCTCGCTCGCCAAAACTCCTGACCTTTAACCCCACCTACTGTGCTCTTAGAGAGCTGAGTGAGGAGGAGAGACGCAACAGGAATGTTCATGCCAGAGGTTTAGACAAGGAGACGTGTCTGATTCCTGTTCCTCCTCAGCAAACAGTGGAATTCGCTCAGTCCTACAGCCTTCTGACCGAGAACCTGATCCTCACTCAGCTCACCCTTCACCTGGGCTTCCACAGGCTACATGATCAGATGGTGAAGATGAACCAGTCTCTGCACCGGCTGCAGGGAACATGGCGAGAGGCTCAGCTGAGCGGGGGTCCGGTAGCGGAGCAGCTGCGGGAGCAGTTTGAGCGTCTGATGACGGTTTACCTGTCCACTAAAGCTGCTGCCACCCAGCCGGCCATGCTCCAGAACTGCCTCAATCTGCAGGCCTCCTGCGCAGCCCTGCTGGTCCAGCTCAGCCTGGGAAACCAGGGACCCGAGCACGTCCCCCTCTCCTTCCCCCTGCCTCCAATACACAACAGCCTGCTCTGCTACGTGCCAGAATTCTTTGCCGAAAACATGGGCGATTTCTTCATATTCCTCCGGCGGTTTGCTGATGAGGTGCTGGAGACGTCCTCAGAGAGCTTAGAGCAAGTGCTCAACTTCATCACTGTGTACATGGGAAATGTAGAGAGAATGAAAAATCCTCATTTGCGGGCGAAGCTGGCGGAGGTTCTGGAGGCTGTGATGCCGCATATGGAGTCTGTGTCGCCTGGCGCTCCGCAGCCCATTATGTTCCAGAGACAGAGGGTGTTCTGCTCCTACTGTCACGCGCCTCATCTAGCCGAAGCTCTCATCACTGTGTTTGTAGACATCGAGTTCACTGGTGATCCTCACCAATTTGAACAAAAGTTTAATTATAGGAGGCCCATGTACCCTATCCTGAAGTACATGTGGGGAGAGGAGAGCTATAGGGAGAGCATTAAGtgTCTGGCCGTTTACGCATCGGAAAATCTAGAAGCCATGAATCCTCCTCTCTTCCTACGGTTTCTGAACCTGCTTATGAACGATGCCATCTTCTTACTAGATGAGGCCATACAGTACTTGAGTAAGATCAAGCTCCTGCAGCTGGAGCGGGACCGGGGGGAGTGGGAGGGTCTGGCTCCAGATGCCCGCAGGGAGAAGGAGTCCAGTCTGCAGATGTTCGGACAGCTGGCTCGCTTCCACAACATCATGTCGAATGAGACCATTGGCACCTTGGCTTTTCTCACATCTGAGATCAGAGGTATATTTGTGCACCCTTTCCTTGCTGAGAGGATCATCTCCATGCTCAACTACTTTTTACAACACCTGGTTGGGCCGAAGATGGGAGCCCTGAAGGTGAAGGACTTCAGTGAGTTTGACTTTAAGCCTCAGCAGTTGGTGTCGGACATCTGTACCATTTACCTGAACCTGGGTGACGAGGAGAACTTCTGTGCCACTGTCCCGAAGGATGGCCGATCGTATTCCCCAACACTCTTCTGCCAGACGGTTCGAGTCCTGAAGAAAATCAACAAGCCTGGAGACATGATTGTGGCTTTCAGTCTTCTAGCAGATAAAATAAAGTCTCTAGCAGACCGGCACCAGCAGGAAGAAGAGACGTACTCGGACGCTCCTGATGAGTTCTTGGATCCCATCATGTCGACCCTGATGCTCGATCCAGTGCTGCTTCCTTCTTCTAACGTTACAGTCGACCGATCAACAATAGCTCGACACCTGCTTAGTGATCAGACAGACCCTTTTAATCGCAGTCCGCTCACCATGGACCAGATCAGACCCAACGAGGAGCTCAAGCAGCAGATCATGCAGTGGTTGGCTGAGCATAAGCAGAGGGCCATGCAGATGGGACCCAGCGGCTAATCCACatataatactaccaccaccccCAACCCTCAGGCATGATCCAGCAGAACTTTATATACTGTCTCCCACGTCTACGCCACCGGAGGAGAGCTCTCCACTCGTAGCAGGAAGACCACAGGTCTACTAAACATGGTGTAGGAAGggttttttactgttaatgttATAGTTGGGGCAAATACAGCAAATGAGCATGATTTATTACTGAAGGCTGATGCAGAAAATCAGACAAGACATCTTTGGTGTCTAAAATTTGCTTTAAATTAAGTTCAAAACAGGACATGCTAGGCTACACTTGCTAACAAACACTGCAGTCAGACTGTTAGCAAACTCATCTTTGTAAATACATGCCCAAAGatgtattttaatacattaacaaCTATTCAAAAAAGACTTTGTTTGCTTAAAAATACGTAATCTACTCATAAATAACTACGAGAACTACTTCCAGCACAAATAGAAGCAGAATAGTAGCTCATTACAAAGTAGGACATTATGTAGTAAATACAGCTCtcgaaaataaaataagagagcacttaaaaatgatgagtttctttgattttaccaaattaaaatcctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggaggagaacatgatgccaagatgcatgaaaaaaactgtgattaaaaaccaaccaggattattccaccaaatattgatttctgaactcttaaacgtAGGTTCATTTACACTTGCAATTTTAAATGTGGCTTTGTCTCAAGGTTTAAACAAGGTCTTACATGCATATACATAGGTCTATCCATACTGTTTaatactaaacaaataaatgaatttttGAGCATGTATTTACAAAGATGGGGTGACAGTCTAAGTGCAGTGATTAAAAAGTTATTGTAACCTAGCCAGTTGTCCagtttttaacttaaaaaacgTCAGATATCAAACATTCCTTTGCTGATCgctcattttaatgtttatcagtttaatttttttgaccGTTTCAGGCTAAATTTGAACAGaatagaaaattgggtataaaactactttattttatttactttggtGAAGAAGACGaaattggtctgtttttctgatCTTTAGTGTCATTTCTGCCTTTCTCtaacagtattaaaaaattgagatacatttttttttttttttttttagataattaaaatttttgcatcttgtaataaaaaaatctgatggtataatgCAACTTATTTTGGTTACtagatgaaaaaaatcagaaaattcagataagatttttaatttttgtgaaaattctAATTGTGAggtgcagaaatacagaaaatagaaaaataaaaaaatgggaggagttaaaTAATAAAGAGGTTTTAAcctcaattttctattttcaaatttagcCTTAATCGTTCAGACAATTGAATTGATAAATGTTAAATTGATAAGCGTTAGACTGACCCTGATCGACTGCATCTAGACTCAGTGATCAaacctgttcatttgtattgatttttttttaatgaaatgcgCCTTTCTGGTAAAGCGGCACACATCTGTAGCATTTAAGCTTCTGTTTTCTCTTTAAAGCTCTTCTGAACATCGACTGCTCTAAAAACCTGGACATATATAAACTCATCAGATATATAACAGGATTCCTGGACACCCAGCTTTTATATACCGCTACTCTTCTTATCACTTTTATTTTGCAATTTGCCCTTGTTACGAATTTTCAATCCCTGCAGAAATTTATGATATGATTTGTGTGTAGAAACAGTATGCAGATCTTTGAGAATAAATGTGAAATGTTGTGAAA

Function

symbol description
ube4a Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBE4A (ubiquitination factor E4A).

NR:

description
PREDICTED: ubiquitin conjugation factor E4 A isoform X2

GO: NA

KEGG:

id description
K10596 UBE4A; ubiquitin conjugation factor E4 A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675259.1 True 5292 mRNA 0.45 20 23859753 23895075

Neighbor

gene id symbol gene type direction distance location
c1qtnf5 c1qtnf5 coding downstream 84437 23767027 ~ 23775316 (-)
LOC103035063 NA coding downstream 134985 23650417 ~ 23724768 (-)
LOC111194286 LOC108277598 coding downstream 1576651 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 1590525 22258919 ~ 22269228 (-)
LOC103037608 LOC108277452 coding downstream 1612294 22205062 ~ 22247459 (-)
LOC103036322 LOC108439975 coding upstream 14336 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 33740 23928815 ~ 23947378 (-)
brip1 NA coding upstream 672516 24567591 ~ 24687178 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 795000 24690075 ~ 24699460 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 1091991 24987066 ~ 25003911 (-)
G13304 NA non-coding downstream 38883 23715440 ~ 23820870 (-)
G13317 NA non-coding downstream 87787 23771648 ~ 23771966 (-)
G13311 NA non-coding downstream 105263 23753551 ~ 23754490 (-)
G13307 NA non-coding downstream 107234 23750470 ~ 23752519 (-)
G13303 NA non-coding downstream 135290 23674210 ~ 23724463 (-)
G13325 NA non-coding upstream 1844 23896919 ~ 23903053 (-)
G13327 NA non-coding upstream 20638 23915713 ~ 23916288 (-)
G13330 NA non-coding upstream 93860 23988935 ~ 23989467 (-)
G13331 NA non-coding upstream 97644 23992719 ~ 24071966 (-)
G13341 NA non-coding upstream 213577 24108652 ~ 24145236 (-)
LOC103035686 kmt2a other downstream 6455 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 305783 23539257 ~ 23553970 (-)
G12767 NA other downstream 1865002 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 2884599 20975082 ~ 20975154 (-)
G11917 NA other downstream 3777311 19998440 ~ 20082442 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 9108 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 1155885 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1578659 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1628712 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1829838 25724913 ~ 25726156 (-)

Expression


Co-expression Network