LOC103036322 (LOC108439975)


Basic Information

Item Value
gene id LOC103036322
gene name LOC108439975
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23909411 ~ 23927376 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675312.1
CTGAACTGTTCGGTGGTTCAGTTTGCACCTTGAACCTCCTCGCTGTCTCCTGCCCATTAAACCCACCAGGATCCAGACAAGCAGCACCATGAGATACACCACAGggGCAGCGAATGCAACAGAACCACCACAAAAGTTCACCTTTAACCCAAAAGAGGGAATTGACAATCCAGCCTTAGTGATTTCCGATGACACAGAGCCGGCGGTGAAGCCGCGGTTATGTCTGCTGAAGCGAGAGGAGGGCGTGGGCTTCGGGTTCTTCCTGAGGAAGGAGAGGAGCTGCAGGGGTCATGTGGTTCAGCAGGTATCCCCGTGGAGTGCAGCAGAGCGCAGCGGCCTGAGGGACGGAGACAGAGTCCTGGAGGTCAATGAGGACTTTGTGGACAATCAGGAGTATGAAAAGGTGGTGATGAAGGTTCAGGCGTCTGGGCAGCAGTTGTGTCTGCTGGTTCTGAGGGCGGAGGATTATGAGGTTGCCGTGTCTGAAGGAATGGATCTCGTGGCTCTGGCCAGGGCACACAGAGGAGAAGACTGCGCTCGCCCACGTTTGTGCCACATCAGCAGAGTACCAGGCCTGGGTCTGGGCCTGGGCATCATCCCCATTGAAGGTGAGAGAGGAAGGTATTACTTGAGTCCAGTTAGAGAAGGTCCAGCAGAAAAAGCAGGAGTTCAGCCAGGAGATCGTCTTATCTGGATGAATGGATCCATGGTCTCTACGCTCACTCATTCTGCACTGGCCAAAATGTTTAGGAAGAGTGCTGAACACGTGACCATCATGGTAATAGACAGCAGAAGTGAAGCGAGCTATGCCCGCCGGAGGCTGCCCATCCTTCCTGCTTTCGCCAGTGTTCACAACCTTCCCCACAGACCGAAAACCCTGCACCTTGTCCAGGGACCACAGGGCTACGGCTTCCTGTTACGCCAAGAGAAGCTCTCTTCAGGACGTATTGCTCACCTGATGCGGGAGGTGGATCCTCACAGTCCAGCAGAGTTGTCAGGGATGGAGGACGGGGATCTGCTGCTAGCAGTGAACGGAGAGCAGGCGGAGAACAGAGAGCACGAGGACATCGTCAGCAAAATACGACAGAGCGGCCAGCAGGTCACACTGACCACCATTTCCATCCAGGGCAGAGACTACTACACACAGCTTGGTTTCTCACCCTTGTTGTTTTATGATCAAACCAACCCGAAGAGAGAGAGTTTTCCCGAGCCCACTTTACCACGCAGAGACCTGCCATCAAACTCCCCGTGTCCTCGACTGTGTGTCCTTCACAGAGAGGGGACAGGATTCGGCTTTAACCTGGCCTGCGTCCAGAACAGGACAGGGACCTACATCAGCCAGgtggtggaggggggagCTGGAGAGAAGGCAGGTCTGTGGGAGGGGGACgtggtggtggaggtgaacgggcagaaggtggaggaggagcACTTTGAGGAGGTGCTGAGGACCATTAAGAAAGCAGGAAGTCCTCTCAGGCTGCTGGTTCTGGAGAGAGCAGGTTATGAAAAACTCCGAAAGAGCGGCTTAACCATCAGCTGTGGCCTGATCTCACACAGCATGCAGGTCCCAGATTCTACACAAGACTGTTTTGTGTGACGGATTGTGAACTTTATCCAATAAACTCAAGAATCATCGTCCTGCTGAAACCACTGAATCACATCTGCTGTCCTGTCAATGAAGATGTGATATatctaaaatacaataaaagaactgcatgcatttaaaatgctttattaaaCCTCTAACCTTTAGATGCATAAACGTTTCTAGCTGCATCTCAAATAACTCATTACTCCCTGTATAATAAACTTCATGTACTTCAGATTTTGTTGTatgaataaatgttaatattgttttattacaaatatataatgcaaACATTAGTATCTGTGTTCAAATAAAAAGACAACATATATTGCAGtattacaaataaatgattttcttGTTATAAATGACTTAAGACAGAAGATATATTTAATGaggtataaaaacatttatttttattgtcatCAGAATTCATACAGAATgcaaatagaaatgtataaaacatgtcTTATTTGTCTttgtaaacatgtaaatattaaattatatttcgATTACATTCTAAAATGTATGTACTCGctgttttgcattgtttttattttatattttcttatttcttctaCGTTTTTACAAAGTTCTCATTTCCCCATACTGTTAATCCAAAGATTtataccaaaataaaaatgtatttaatcaa

Function

NR:

description
PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF4-like

GO: NA

KEGG:

id description
K24059 PDZD3; PDZ domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675312.1 True 2243 mRNA 0.47 11 23909411 23927376

Neighbor

gene id symbol gene type direction distance location
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 14336 23859753 ~ 23895075 (-)
c1qtnf5 c1qtnf5 coding downstream 134095 23767027 ~ 23775316 (-)
LOC103035063 NA coding downstream 184643 23650417 ~ 23724768 (-)
LOC111194286 LOC108277598 coding downstream 1626309 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 1640183 22258919 ~ 22269228 (-)
nlrx1 nlrx1 coding upstream 1439 23928815 ~ 23947378 (-)
brip1 NA coding upstream 640215 24567591 ~ 24687178 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 762699 24690075 ~ 24699460 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 1059690 24987066 ~ 25003911 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding upstream 1079616 25006992 ~ 25038802 (-)
G13325 NA non-coding downstream 6358 23896919 ~ 23903053 (-)
G13304 NA non-coding downstream 88541 23715440 ~ 23820870 (-)
G13317 NA non-coding downstream 137445 23771648 ~ 23771966 (-)
G13311 NA non-coding downstream 154921 23753551 ~ 23754490 (-)
G13307 NA non-coding downstream 156892 23750470 ~ 23752519 (-)
G13330 NA non-coding upstream 61559 23988935 ~ 23989467 (-)
G13331 NA non-coding upstream 65343 23992719 ~ 24071966 (-)
G13341 NA non-coding upstream 181276 24108652 ~ 24145236 (-)
LOC111193726 NA non-coding upstream 550342 24477718 ~ 24486728 (-)
G13390 NA non-coding upstream 737217 24664593 ~ 24665038 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 640 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 56113 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 355441 23539257 ~ 23553970 (-)
G12767 NA other downstream 1914660 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 2934257 20975082 ~ 20975154 (-)
spcs2 spcs2,LOC107677086 other upstream 1123584 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1546358 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1596411 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1797537 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 2074955 26002331 ~ 26016396 (-)

Expression


Co-expression Network