alg1 (alg1)


Basic Information

Item Value
gene id alg1
gene name alg1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27577763 ~ 27589298 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675778.1
ttCTTGAATATCGCAGCAGCGGCTCCTTTAAATCCCTCCCCCCGCCTCAGCGCGTCAGAGGCGGGCTAACCAGCCACGATGGCGGACGCCAATgcggcagtgctgctggtgaCGGTGTCGCTGGTTCTGCTGGGGCTGCTGGCCGGGCTCAGCCTGTCCTGGGCGCTGCTGCCGGTGGCCGTGGTCGCCTTCATCTTCGTGCTGGCGCGGAGCCTGAAGGCGCGCGACGAGTCGGCGCTGCTGAACGCGTGCGTGCTCGTGCTGGGAGACCTGGGGCGCAGTCCGCGCATGCAGTACCACGCGCTGTCCCTCAGCAGGCACGGATACAACGTCACGCTGGTCGGGTTCCTCGGTACCAAACCTCATCAAGATGTTCTTGAAGACGACCGAATAGACATCATTCCTATTTCAGAACTTAAGGGCATTCAAGTGGGACCGAAAATCTTTCGCTATGCCTCCAAGGTGGTCTTCCAGTCTATCCAGCTTCTTTACGTCTTACTGAAGCTGGAGGACCAGGCTTATATTTTCCTGCAGAATCCCCCTGGGTTGCCGAGTATTGCAGTAACGTGGCTGGCCAGTCGATTCTGCGGTGCTCAGTTTGTGATAGACTGGCACAATTATGGTTACTCCATCATGGCGCTCTCTCTGGGGGAGAAGCATCCCATCGTTAAAGTGGCAAAATGGTACGAGAAGTTTTTTGGCCGTTTCTCAGATCATAACCTGTGCGTCACCAATGCTATGAGACATGACCTTCAAAAGAATTGGAATATCAGGGCAACGACTTTATATGACAAGCCACCTTCAATATTTAGAGAAACACCTCTGCATATTCAGCATGAGCTCTTCTTCAGACTGGCCAGTGCTTACCCTCCATTCAGGGCAagTGATGAGAACAGCAGGCAGAATGAAGAACAGACTGCCTTTACGGTGCTCAACACTAAAACAGGAGAGGTGACTTCGGTTGCTGGACGACCTGCACTGCTCATCAGCAGCACCAGCTGGACTGAGGACGAGGACTTCTCAGTTCTACTAAAGGCCCTTGAAGATTATGAACGCTTCATAGAAGCAAAAGAAAGTCTTCCATCAATATTGTGCGTTATCACAGGTAAAGGCCCTCTTAAGGATCATTATAAGAAGATAATCGACTCTAAGaattttaaacatgttaaaatctGCACTCCGTGGCTGGAAGCAGAGGATTATCCTCTTCTCCTGGgttCTGCTGATCTAGGAGTCTGTTTGCACACATCCTCGAGTGGTCTTGACCTGCCAATGAAGGTGGTCGACATGTTTGGTTGTTGTCTGCCTGTTTGTGCCATAGACTTCCAGTGcTTGGATGAGCTGGTGAAACATGAGGAAAATGGCCTGATCTTCAAGGACTCATCAGAACTATCTCAGCAGCTAAAGATGCTGTTTTCAGACTTCCCTAACGAACAGGGTAAACTGAACCTCTTCAGAAACAACCTCAGAGAGAGCGGACAGCAGCGTTGGGACGAAAACTGGGACCACAACGTCCTGCCGCTATTCAAGGAACACTGTGACTGaccagcagcagagcagctgcAGTACGGTCTTTGCACTCGCCACAAGCGGCAGTTTCGGTCAGGGATTTGTACAGGGTATACCATTACTATTACAATGTCAATGTACCTCTTTTGGGTCATGAGCATTCCAGCAATTTAATGGGATAAGACTTGAATATAAGAgcaaaaagcacatttttttcttgtaaataaGATGTAAATAAGCactttaataacaaaaaaagagattttgaCAGATCAGGTCAACTGAGTATCTTGAGCATTTCTATGGTGGAGACTCGGGTGTATGGGAAGACGTGTGTGACGGGATGTGTAACGACGAGGTGTTTCAATCCAGCCTTTTCTGTACAAGAAGAAACaagattttaagttttattcatGGACTATTTTGATGAATGCCTGTTACTACTGCAATATTATTAGAGCATTATTAGTGTTGAAATGAATAGAGAAATAtaatgacaaataaataaactcaccTAGTTCA

Function

symbol description
alg1 Predicted to enable mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ik. Orthologous to human ALG1 (ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase).

NR:

description
PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03842 ALG1; beta-1,4-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675778.1 True 2031 mRNA 0.48 13 27577763 27589298

Neighbor

gene id symbol gene type direction distance location
LOC103029886 LOC107738631 coding downstream 8361 27550309 ~ 27569402 (-)
LOC111193779 LOC108436637 coding downstream 70395 27409879 ~ 27507368 (-)
LOC103032722 LOC107690236,LOC108276491,LOC107733827 coding downstream 257918 27128598 ~ 27319845 (-)
ranbp1 ranbp1,LOC107752129,LOC107684983 coding downstream 558421 27009547 ~ 27019342 (-)
golga3 golga3 coding downstream 569883 26983884 ~ 27007880 (-)
LOC103033698 LOC108436663,LOC108256318,LOC105900006,LOC106596483,LOC107738612 coding upstream 15274 27604572 ~ 27629246 (-)
LOC103034330 sept12,LOC107733855,LOC107568113,LOC107690244,LOC107738615 coding upstream 262878 27852176 ~ 28024801 (-)
tmem114 tmem114 coding upstream 1044478 28633776 ~ 28662302 (-)
naa60 naa60,nat15,LOC107690248,LOC107568044,LOC107685925 coding upstream 1212792 28802090 ~ 28812124 (-)
eci1 NA coding upstream 1232670 28821968 ~ 28829514 (-)
G14157 NA non-coding downstream 105030 27471418 ~ 27472733 (-)
G14156 NA non-coding downstream 115272 27458883 ~ 27462491 (-)
G14152 NA non-coding downstream 147271 27426802 ~ 27430492 (-)
G14128 NA non-coding downstream 452256 27111188 ~ 27125507 (-)
G14131 NA non-coding downstream 530648 27046869 ~ 27047115 (-)
LOC103038133 NA non-coding upstream 30937 27620235 ~ 27621121 (-)
G14265 NA non-coding upstream 127219 27716517 ~ 27779305 (-)
G14280 NA non-coding upstream 325366 27914664 ~ 27915156 (-)
G14282 NA non-coding upstream 407222 27996520 ~ 28077222 (-)
G14284 NA non-coding upstream 415009 28004307 ~ 28041964 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 539017 27023495 ~ 27038746 (-)
G14113 NA other downstream 675050 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 744150 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 878970 26670119 ~ 26698793 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other downstream 1561367 26002331 ~ 26016396 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other upstream 1160236 28749534 ~ 28796458 (-)
emp2 emp2 other upstream 2024188 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 2168389 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 2299501 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 2671720 30261018 ~ 30268350 (-)

Expression


Co-expression Network