LOC103033698 (LOC108436663,LOC108256318,LOC105900006,LOC106596483,LOC107738612)


Basic Information

Item Value
gene id LOC103033698
gene name LOC108436663,LOC108256318,LOC105900006,LOC106596483,LOC107738612
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27604572 ~ 27629246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675793.1
TACCAGAGCCTGTGTGTAGATGCCCGTTAGCCCAaacagttagcttagctagctaactgagcTGGCGGCTCATTTTCCGTgtttttagcttatttttttataaaataaaactagacACTATGACACTAACGCCGATTAAAGATGGCGAGTACACCGCCACAGTCTATAAAATGATCAAAGATGGCCGATATGGAGATGCTATACACATACTGAGCAATGAACTTCAAAAGCAGATGAAATCCAGGGCTGCCTTATCTCTGCTGGGCTATTGCTATTACCACATGCAGGATTTCACCAATGCTGCTGAGTGTTATGAGCAGCTAATTCAGCTGCATCCAGAGGTGGAGGACTACAAACTCTACTATGCTCAGTCCCTGTATGGAGCGTGTGCTTTCCAAGAGGCAATGAAGGCTACCTTTACTCTGGACAACCCCACAAGTCACACTAAGATGATAAAGCTGCAAGCTGCTATCAAATATGGAGAAGAGGATTTTCCTGCAGCAATGGCCCTGGTGGAGCAGCTGACCGTGGATGACCCGGACACCGATGTGGATCAGGGCTGCTTGCTCTACAAGCTTGGGGAGTATGAAAAGGCTTGCGTGAAGTTTGTGACCGCTATGCAAGTGCTGGGCTATCAGCCAGATTTGGCATACAACATCGCCCTCTGTCACTACAGCCTGAAGCAATACGCAGCAGCGCTCAAGTACATCGGAGAAATAATTGAGCGTGGGATGAGAGAGCATCCAGAACTTGGAGTGGGTATGACGACAGAAGGCATTGAAGTAAAGAGTGTCGGAAACACACTCGTGCTGCATGAAACGGCATTGATTGaggcttttaatttaaaagcagcCATTGAGTACCAGCTGAAGAAGCATGACGCTGCCCAGGAGGCACTGACTGATATGCCGCCAAGATCAGAAGAGGAGCTGGATCCAGTCACCCTTCACAACCAGGCTCTGATGAACATGGACACAAAGCCTTCAGAGGGTTTTGAGAAGCTGGCTTTTCTCCTGCAGCAGAACCCTTTTCCACCGGTGACGTTTGGCAACCTGCTTCTGCTCTACTGTAAATATGAGTACTTTGACCTTGCCGCTGATGTGATGGCTGAAAACGCGCACCTCACTTACAAGTTCCTTTCAACATACTTGTACGAGTTCCTAGATGCTATGCTGACGTCACAGACATCTCCAGAAGAGGCTTTTCGAAAGCTGGATGAAATCGCTGCAAGACTAACCGAGCAATTACGCAAGGTTACCAAACAGGTACAAGAGTCACGGCGAACGAGGGATGATGAAGGCCTGAAGAAATCACTTGAAGACTATGATCAACTTCTAGAGGAGTACATTCCTGTGCTGATGGCACAGGCTAAGATTTACTGGAACCGAGAGAACTACAACATGGTGGAGAAGATTTTCCGCAAGTCTGTGGAGTTCTGCAACGAGCATGACACTTGGAAGCTCAACGTGGCGCATGTGCTTTTCATGCAGGAGAACAAATACAAGGAGGCCATTGGATTCTATGAGCCCATTGTCAAGAAACACTACGACAATATCCTCAATGTCAGTGCCATTGTCCTGGCTAACCTGTGCGTGTCCTACATCATGACGAGCCAAAATGAAGAGGCAGAGGAACTGATGAGAAAAATCgagaaagaagaagagcagGTGTCTTACAACGATCCAGACAAGAAGGTGTTTCATCTGTGCATTGTCAACCTTGTGATTGGGACTTTATATTGTGCTAAAGGGAATTACGACTTCGGAATTTCCCGTGTGATAAAGAGTCTGGAGCCGTACAACAAGAAGCTTGGTACGGACACGTGGTTTTACATCAAGAGATGCTTCCTCTCCCTGCTGGAGAACATGGCCAAGCACATGATCATGCTGAGAGATACTGTGGTCCAAGACTGCGTCCAGTTTCTGGAAAACTGTGAACTGTACGGGAGGAATGTGCCAGCCGTCATCGAGCAGCCCCTGGAGGAGGAGCGCATGCACATCGGCAAAAACACGGTCACGTACGAGGCCCGCATGATAAAGGCTCTGTTCTATGAGGTCATTGACTGGAACGATTAGGGTTGTTGTGGGTATCATAACCCTGTACAGTTGGAGTTTGTCAAAAAATCTTATAAATTGATTCATCAGTGATCATCCAGATGCAGTCAATCAGCAAAGACAGGTTTGATATctagtacagtactgtgcaaacattttaggcaccaaagcaaataaCACTAATCCAACACTAATCTCCgaaatatgagtgtttttacctgaaaaaacaccacttatgatttaaacagatgcaaataaacatacatacagtaaaacataacaaggaattcccatttttaa

Function

NR:

description
PREDICTED: tetratricopeptide repeat protein 30A isoform X1

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0001736 establishment of planar polarity biological_process
GO:0036372 opsin transport biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0031514 motile cilium cellular_component
GO:0005879 axonemal microtubule cellular_component
GO:0005215 transporter activity molecular_function
GO:0070738 tubulin-glycine ligase activity molecular_function

KEGG:

id description
K19683 TTC30, DYF1; tetratricopeptide repeat protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675793.1 True 2354 mRNA 0.46 19 27604572 27629246

Neighbor

gene id symbol gene type direction distance location
alg1 alg1 coding downstream 15274 27577763 ~ 27589298 (-)
LOC103029886 LOC107738631 coding downstream 35170 27550309 ~ 27569402 (-)
LOC111193779 LOC108436637 coding downstream 97204 27409879 ~ 27507368 (-)
LOC103032722 LOC107690236,LOC108276491,LOC107733827 coding downstream 284727 27128598 ~ 27319845 (-)
ranbp1 ranbp1,LOC107752129,LOC107684983 coding downstream 585230 27009547 ~ 27019342 (-)
LOC103034330 sept12,LOC107733855,LOC107568113,LOC107690244,LOC107738615 coding upstream 222930 27852176 ~ 28024801 (-)
tmem114 tmem114 coding upstream 1004530 28633776 ~ 28662302 (-)
naa60 naa60,nat15,LOC107690248,LOC107568044,LOC107685925 coding upstream 1172844 28802090 ~ 28812124 (-)
eci1 NA coding upstream 1192722 28821968 ~ 28829514 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding upstream 1275815 28905061 ~ 28933768 (-)
G14157 NA non-coding downstream 131839 27471418 ~ 27472733 (-)
G14156 NA non-coding downstream 142081 27458883 ~ 27462491 (-)
G14152 NA non-coding downstream 174080 27426802 ~ 27430492 (-)
G14128 NA non-coding downstream 479065 27111188 ~ 27125507 (-)
G14131 NA non-coding downstream 557457 27046869 ~ 27047115 (-)
G14265 NA non-coding upstream 87271 27716517 ~ 27779305 (-)
G14280 NA non-coding upstream 285418 27914664 ~ 27915156 (-)
G14282 NA non-coding upstream 367274 27996520 ~ 28077222 (-)
G14284 NA non-coding upstream 375061 28004307 ~ 28041964 (-)
G14289 NA non-coding upstream 434186 28063432 ~ 28063978 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 565826 27023495 ~ 27038746 (-)
G14113 NA other downstream 701859 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 770959 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 905779 26670119 ~ 26698793 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other downstream 1588176 26002331 ~ 26016396 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other upstream 1120288 28749534 ~ 28796458 (-)
emp2 emp2 other upstream 1984240 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 2128441 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 2259553 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 2631772 30261018 ~ 30268350 (-)

Expression


Co-expression Network