grin2a (grin2a,LOC107690256,LOC107685916,LOC107568390)


Basic Information

Item Value
gene id grin2a
gene name grin2a,LOC107690256,LOC107685916,LOC107568390
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29311410 ~ 29583262 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675956.1
TTTCCTCCGGTTCCCAGTGTCTGAGTGCAGGAGGGGCGCGAGGAGCCGGGAGTCATGGATAAAGCCTGAAAGCACGCGCGGCGCGAGCGATGGGATTACTGTGAGAGGTGCTGTGTTTTTGCTGTGGGGATCTGAAGTTAAAGGATTGGTCTGTGGGTCTGTGgcgtggagagaaagagagagagagagagagatacagtggtGGATGCGCGGGCTGTCAGGAGAGAGAGGCACTGCTGCAATGCTCACTCACTCCACTGTTCCGGAGCTCTGTGGAAGAGAGATGCTGGAATGAAGTCGAGCACTATGGGGTTTTCCAGGTTGGTACTCCTGACTCTTCCAGCACTCCTTACCCTGGTGAGCGTCGCCTACGCGGCCGAGAAAGTGCCCATCCTGAACATTGCAGTGATCCTGGGGCGAACGCGCTACATTTCGGACAGAGATATACGCGCTCTGTGGAGCAAGGACGACCCCATCGACGTCAATGTGGTCACCCTGCTGGTCAACGAGACGGATCCCAAAAGCATCATCACTCATGTGTGCGACCTCATGTCCGGGACTAAAATCCACGGCGTGGTGTTCGGGGACGGCACCGACCAGGAAGCCATCGCCCAGATTTTGGATTTTATTTCCTCCCAGACGTTGATACCCATCCTGGGGATCCACGGCGGCTCCTCCATGATCATGGCCGACAAGGACGTCAAGTCAACCTTCTTCCAGTTTGGCGCTTCTATCCAGCAGGAGGCGCTGCTgatgctgaacatcatggaggAGTACGACTGGCACGTGTTCTCCATTGTGACCAGCAAGTTCCCCGGCTACCAGGACTTCATCACCATCCTGAAGACCACGGTGGACAACAGTTTCGTGGGCTGGGACCTGCAGAACACCATCACGCTGGACGCGGTGGACGCCGACTCGCGCTCCCAGATCCAGCTGAAGAGGGTGCAGTCGCCCGTCATCCTGCTCTACTGCTCCAAGGACGAGGCCGTCTACATAATGGAGGAGGCTCGATCTCTGGGGCTAACGGGCTTTGGATATATCTGGATTGTGCCGAGTCTGACCACGGGCAACCCGGACATCACGCCAGACGAGTTTCCTTCTGGAATGATCTCCGTCTCCTACGACGACTGGGACTACCCTCTGGAGGCTCGGGTGCGAGACGGGCTGGGGATTATAACTACGGCTGCTTCGGCTATGCTGGAGGAGTTCGGAGACATTCCCGAAGCCAAGACCAGCTGCTACGGACAAATGGAGAAGGCCAAGCTACCTCCAAGCGCTCTGCACAAGTACATGATGAACGTGACCTGGGACGGCAGGGATTTATCCTTCACTGAGGACGGATATCAGGAGCATCCCAAACTGGTGGTCATCGTGCTGAATAAGGACAGAGAATGGGAGAAGATGGGGAAGTGGGAGAACCGCAGCCTGACTCTGAAGTATCCGGTCTGGCCTCGCTTCAACTCGTTCGGAGACGCCGAGACGGACGATAATCACCTGACCATCGTCACTCTGGAGGAGAAGCCCTTCGTCATCGTGGAGGACGTGGAGCGCCTGACGGGAACCTGCATGCGCAACTCCGTCCCCTGCAGGAAACACATCAAAGACAACACCACTGAGGGTGGAGGAACGTACATTAAAAAGTGCTGCAAGGGCTTCTGCATCGACATCCTGAAGAAAATCGCCAGGAACGTCAAGTTCACCTACGATCTTTACCTGGTGACCAACGGAAAACACGGAAAAAAGATCAACAACGTGTGGAACGGCATGGTGGGAGAGGTGGTGTATAAGAAAGCCGTCATGGCCGTGGGCTCGCTGACGATCAATGAGGAGCGCTCGGAGGTCATCGATTTCTCCGTTCCCTTCGTGGAAACCGGCATTAGTGTGATGGTGTCTCGCAGCAACGGCACCGTCTCCCCCTCAGCCTTTCTGGAGCCGTTCAGTGCGTCGGTGTGGGTGATGATGTTCGTGATGCTGCTGTTGGTCACCGCTATGGCCGTCTTCATGTTTGAGTATATCAGTCCTCTAGGATTCAACAGGAACTTGGCCCAAGGCAAAGACCCCCACGGACCCTCCTTCACCATGGGGAAGGCAGTGTGGCTGCTTTGGGGCCTGGTTTTCAACAACTCTGTGCCCGTGCAGAATCCCAAAGGCACCACCAGCAAGTTCATCGTGTCCGTCTGGGCCTTCTTCGCCGTCATCTTCCTGGCCAGCTACACTGCCAACCTGGCTGCTTTCATGATCCAGGAGGAGTTTGTGGACCAAGTGACTGGGCTGAGTGACAACAAGTTCCAGAGCCCATACTCCTACTCTCCTCCTTTTCGATTTGGGACAGTCCCCAACGGCAGCACAGAGAGGAACATCCGCAAGAACTACCCAGACATGCACCAGTACATGGTCAAATACCACCAGACCGGGGTGAACGACGCACTGGTCAGCCTGAAGACGGGCAAACTGGACGCCTTCATTTACGAcgcagctgtgctgaactacaTGGCTGGGAGGGATGAGGGCTGTAAGCTGGTGACCATCGGCAGCGGCTACATCTTCGCCACCACGGGTTACGGGATCGCTCTGCAGAAAGGCTCCGCCTGGAAGCGGCAGGTGGACCTGGCCATCCTGGCCATCATTGGTGACGGTGAGATGGAGGAGCTGGAGGCGCAGTGGCTGACTGGGATCTGCCACAACGAGAAGAATGAGGTGATGAGCAGCCAGCTGGACGTGGACAACATGGCCGGAGTGTTCTACATGCTGGCCACCGCTATGGGCCTCAGCCTCATCACCTTCGTGTGGGAGCACCTGTTCTACTGGAGGCTTCGCTACTGCTTCACCGGGGTGTGTTCAGGCAAACCCGGCCTgctcttctccatcagcaggGGTATCTGGAGTTGCATTCACGGCGTCCACATTGACATGAAGAAAAAGTCTTCCGATCTGGATTTCAGTCCTCAGGCCAACATGCTGAAGCTTATAAAGTCGGCTAAGCagatgaccaacatgaccaatcTCAGTGGATCCAGGGTGAATTCGCCTAAACGTGCCGGAGAATTCATGCACTCGGCCGGACCCATGATCATGGATCTGATGTCTGAAAAAGGGAACTTTGTGTACACTGACAACCGCAGCTATGCCCAGAAAGATATTTATGGAGACTCCAGCGACATCCAGTCCTACTTGGCCAACCGCCACAAAGACCACCTGAACAACTACATCTTCCAAGGCCAGCACCCCCTCACTCTAAACGAATCTAACCCCAACACCGTGGAAGTTGCTGTGAGCGCGGATGCAGCTCAGACAGCTGCCAAGCCCAGGGCTCTGTGGAAAAAGTCTGTGGATACAGTGCGGCAAAGCCAGGGACCCGACACTTTAGCCCCTGACCCCCGTCTGTCCATGAAGAGCCAGCGCTACCTTCCAGAGGAGGCGGCCCACTCCGACATCTCCGACTGCTCCAGCAGGGCCACCTCGTACAAGGATCCTGATAACAACAAGCACCTGAAGCCCAAggacaacttaaaaaaaagatcgATGACGTCAAAATACCCTAGGGATTGCAGCGAAGTGGAGCTGTCCTACTTAAAAAATAAGCAGGGCGGATCTGGCCGAGAAAAAATCTACACCATAGACTCTGACCGGGAGCTGAGCCTGCACTCGGATCCACTGCACTACAGAGAAAGCAGAGGCCTGGCGGCCGACGATTTGGATTTCCCTGAAATTTACTCCGACCACAACGACAATTATAGAAAATGCGACCAGCCCATCATCCATCTCAACAGCAGTCCCCTTCATCACACTGATGCCGACCTCCTGCCTGACAATGCATACAACAAACACTACAGCGTAAAAGATAAGAACGCTAGTCCGCACGAGAGCAACGACCGCTTCAAACAAACCCACTGTCGAAGCTGCTTGTCCAAGGTCCCTAATTACCCCACAGGACCCTACGCACCCATGCGTTCACCCTACAACCGCTGCGAAGCCTGCTTACACATGGGCAATCTCTACGACATCAGCGAGGACCAGATGCTCCAGGAGGCGATTCTCAGCCCTACCATGCATCCTGACGACGCCTTCGGCCACTACTGGCCGCAGACGGACGGGCCGCACGTCCAGAAAAGGAATCGTCTGCGGCTCAGTCGCCAGCACTCCTTCGACAACATCATGCTGGAGAAGCCCAAGGAGATCGACTTGAACCGGCCGGCGCGCAGCGTCAGCCTCAAGGAGAAGGACCGCTTCCTGGAGGACAGCCCGTACGCCAACCTGTTCAACATTAAATCCGACAAACTGTTCGGGAGCAGGTCCATGCTGTTCAACCACAACCTCGAGGAGAGCAAGCGCAGCAAGTCCCTTTACCCCGATCACACCACGGACAACCCATTCATGCAGGCCGTGCGGGACGACGCACGCCTGGTCCACGGCAGGAGCTCCTCGGACATTTACAAACAGTTGGCACCCATCAAAACGAGGAACGAGAACAATCTGAGGTCCTCCATCAAATCCACCACCTCATACTGTTCCAGGGATGGTCGAATACCCAATGACATGTACATTTCAGAGCATGTGATGCCTTATGTAGCCAACAAACCCAGTGCATACTCAGCTCCTCGGGTCCTCACTTCTTCTCAGTTCAGCAATAGACGAGTGTATAAGAAAATACCTAGTCTCGAGTCAGACGtttaatgctctctctctttgtgtagATGAAATATTTATTCACTTTAGGATGCCATAGTCGCCCACATCTTTGAGacgaaaaacagaaaacacgaACAAGTACCCTCGagtactttctctctctctcttttgcagaTATCACACTTTCATGTATCAGCAAGTCATCCTGGATAGTGCTTGCCAAAGGTTTTTTGGGCATTTGTTTAGTCACCCTTTCAGGAAAACAAATATTTCCTGGGCTAATCGTGGACGGCCAGTTAGTCAGGTGCGTAGTAGTCAGGCTGGGGAAATTGGGCGAGGTCCAGAGTCGGGGGCCGCTGCTGTTGGCTGACCCTACAGCATGTGCGTCGTTGACCCCGCCAAGGCCCAGACAGATGGACTGCAGGGTTgaggggaggaggggcagaGCAGAGTGTATCCTGAGGTCGCCAGCGTTTCAGGTAAATCCCACCCTGCGCTGGCCTCTTCAGAGAACAGGGGTCGACGAGAGCATACCCGATTCAGCCTGGCGGGATTTAGCGCTTTAAGAGCTGTTTACCGAAGTAAACCTGAGGCAAGCGAGGGGTGTACATCGTTCATGGCACTCAGAGCAATGAAAGCATAGCATTGTTGCTTTTATTCTTCTCTATTACTATAGATTTTGGGATTTTGGCATTCTAATCCCTATTTAGACCTTTAGAAGTTTAGCTTATGTGGTAGCACAATAATCATTAGTTATCCTCCCATCTCTGCTTCTCAAAGCGTATTTCTCGATTACTGTCAGGAATAGATTATTTTGCATGTATCCGTTTTTGTTTCCTTTCCTTTTGTTTCGTTATTAGAAATGAAAACTCACTCATATACTTACCGGAAGGtgaattttttttgtctgaaggATTTGAAAGGTGCTTGAAAGCTTGACCTGTACTAAGCAAAGTAAGCGGGTTTGACCTCGGTTAGCATCGGAACACTTGAGACTTACAGCCCCGTGACCATCTTCCTGGGAATATATATTTCGTTGATTCACCATCTGAAACAGGGTACTGACAATTCCTACAGTGGAACTTTGTGTCTGACGCGTTCATGCTTCGATTTTGTTGCTTACACTGTGAAACCGAATCCGAGCATTTCTTCCAGAAAGACTGctgtttattatgttttgtttttctggttatttatttattcatttttcttgACGTGACTGAATGATGGGAAGGTCTACAAGTTGCTATGTtctcaacatttctacatttcagcaagacaatgcatGTGAAAAAAACCTTGGGTAAGCTTGAAATCTGAACCAGAACATTTACGTTTTAACGGTCTTTTAATTTCATGTCCATGTTCACGTTCGCGTTTTCACATCTTGTGCAGCGACcaggcacaaaaaaaataaaaacctcacGTTCTGTAGACGTATTGTTCTCTAGTACCGCGCGGCCGATTTGATTCGCAGCCAAATCTGACTCGTGCGTCGAAATCAAACAACTCAGGATAGTTCTCCGTGGCGTATGGGGCTTCGCTGCAGCACCCGAAGGCAAGCTCCAGTGCGTGTGCGTTGTGCTTAGCATGCTAACTCAGTGGGTTTGTTCTTTCCCTCCTCTCTGCTGCAGTTGTTTACTCGTCCAAGGTCTTCCAGTGCCGTCACTTTCATACAAGCGCTTGCGAAACAAACACAATTAGACGTGagggagaaaaacagagacagagagaaaaaaaggaaagagagagagaagctttCAGCAGCCATGTGCAGCCCGATCGAGCTTACATTTGGCTCACGGAAGCCAAAATGGAGGCGAGCATTCGTTTCTTATGCAGTTTTTCcagttagagagagaaagcaatcAGAGTGAAGGCAATCAGACACTGAACACGCCATGCAGCATCGAGCTAAACTGAGCATTACTGAGCATCACTGCGGCTAAAGTGAGAGCTCTGTAATGGACtatttgtttattcatattCAAGAGAGGCAACCTAAGGGCATTTTATGGAGACTTTATgaagattatttattttctaataagTTTAACTCTTTGATCAGCTTCCaatgctgctgatgtagcattaccgagtagcatcacagcgtgttTGGAGGAAAGTGAAGTGATATAGCTACAAAACATCAGCTAATAGACGTCAAAGAGtgatatggggagagagcgccatctacccatccagagagagcatggcccattgtgctctctcggactccggctgctgatggcaagcagcatgactgggattcgaaccagcgatctcctgtgGCGATCATAGTGGCTTCACGCCATGGCACGTTCAGTGTATGTTTGCCTTAGGACTGAGATTAAGCTGAAAAGAGAACAGAAAACAGTAGACGACTGCTTGTGAcgttctcttctgttctgaagtcacccccccaccaccactccCTCTCCACCTCCAACCAACACTCTCGAGcgctctttctcttctttctctgctGCTTTCATTTTTTTGAGCTTACCCAACGTGAGATCCAACCTCACCTTAAGTATCTAATATCTCATTATCTCGTTATAtcatgaacatgaacatgaacaaCGTACTATATCATATTAAGTGCTGCTTGAAGAAGCTAATGTGTAAGCAATATGCACATGTAAAATATCAATTATCAAGGTCTTGTAACCATGTATGACAttcatatttcttattttcttgtttCGATTTGATATATTTCTTTGtttcgtttatttatttatttattttttttttgttcgttgATCTTGACTGATTTTACACCCTTCTAATAACCCCCCACTCCTTacgaaaaatgtattttgattaCATGAAAAATAATACTAGTGGCATGCAACCCAAA

Function

symbol description
grin2a Enables glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in Huntington's disease; bipolar disorder; and schizophrenia. Biomarker of Alzheimer's disease and vascular dementia.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2A-like

GO: NA

KEGG:

id description
K05209 GRIN2A; glutamate receptor ionotropic, NMDA 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675956.1 True 7498 mRNA 0.51 14 29311410 29583262

Neighbor

gene id symbol gene type direction distance location
usp7 usp7 coding downstream 316305 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 368320 28934626 ~ 28943090 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding downstream 377642 28905061 ~ 28933768 (-)
eci1 NA coding downstream 481896 28821968 ~ 28829514 (-)
naa60 naa60,nat15,LOC107690248,LOC107568044,LOC107685925 coding downstream 499286 28802090 ~ 28812124 (-)
socs1 socs1 coding upstream 294779 29878041 ~ 29880914 (-)
tmc5 tmc5 coding upstream 359161 29942423 ~ 29960792 (-)
LOC103032739 NA coding upstream 1298842 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 1354024 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 1363503 30946765 ~ 30954116 (-)
G14517 NA non-coding downstream 6702 29302247 ~ 29304708 (-)
G14466 NA non-coding downstream 25711 29285363 ~ 29285699 (-)
G14458 NA non-coding downstream 53742 29257426 ~ 29257668 (-)
G14456 NA non-coding downstream 76787 29234399 ~ 29234623 (-)
G14455 NA non-coding downstream 82915 29228290 ~ 29228495 (-)
G14541 NA non-coding upstream 10542 29593804 ~ 29600294 (-)
G14567 NA non-coding upstream 185644 29768906 ~ 29773096 (-)
G14578 NA non-coding upstream 252055 29835317 ~ 29862563 (-)
G14620 NA non-coding upstream 455222 30038484 ~ 30038708 (-)
G14660 NA non-coding upstream 562192 30145454 ~ 30229401 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 514952 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 2272664 27023495 ~ 27038746 (-)
G14113 NA other downstream 2408697 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 2477797 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 2612617 26670119 ~ 26698793 (-)
emp2 emp2 other upstream 30224 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 174425 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 305537 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 677756 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 1090798 30674060 ~ 30725921 (-)

Expression


Co-expression Network