LOC111193890


Basic Information

Item Value
gene id LOC111193890
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30946765 ~ 30954116 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676180.1
TGGAACCACATCCcagctgaagagagagagagagagagagagagagagacagACAGGGCTGATCTCAGATTCTAAGATGATCCTCACTGTGCTGTTGTTGCTGGCCCTCCTGCCTGGACCAGGAGTCACTGCCATCAGAGAGAACATTGCAATTGGAGCCAGAGCAGTTCAGTCGTCTACATACGATTCAGGACACGCTCAGAATGCTGTAGACGGCAACAGCAATGCAAACTACTGGAAAGGCTCATGCAGTCACACTAGTTATGAGACTGATCCCTGGTGGAGACTGGAGTTGCCTGCAGTCTACAACATAACCTCCGTAACCATCGTTAACCGCGGAGACTGCTGTGGAAAGCGGATAATTGGAGCAGAGATTCGCATCGGAAACACCCTTGAGAACAACGGCAACAGAAACAAACTagttGCCGTTATAAACTCCTTCCCATCTGGCGTCACAAATTCATTCAACTTTAAAGCCACTGAGGGACAGTTTGTTAACATTTTCTTACCAGGATCGCGCAAAATACTCACTTTGTGTGAGGTGCAGGTGTTTTcagATGAGGAGGTGATCAGTCAGTCTCCTGATTTCTATGACAATATCGCGGTTGGGGCCAAAGCAGTCCAGTCGTCTACAACCCCTACTTTAGGAAACCCTGAGTACGCTGTAGACGGCAACACTGATACAGACTCCAGAAGAGGCTCATGCAGTCACACTCTGACTGAGGCCAATCCCTGGTGGAGGGTTGAGCTGCCTGGCGTCTGCAACGTGACCTCTGTCACCATCGTCAACCGGGAAGACTGCTGTTCCGACAGGATAAAGGGAGCTCAGATTCACATCGGAAACAGCCTCAAGAACAAAGGGAACGACAACaagctAGTTGCAGTGATTGGCCCCACATTGTCTGAAATCACAATGACGTACAAGTTCAAAGCCACCAGAGGACGGTTTGTTAATATTTTCTTACCAGGAGAAGACAAAATACTCAGTCTGTGTGAGGTGAAGGTGTTTACAGATGAAGAATTCAGCCCAGAAGACTTTCATGTTCATGATTATGGTGAGCTGCCCAATCTTGCCCCCAAAGGAAGAGCCACTCAGTCCAGTCTGCTCACCTCTGGGAAGTTCCCAGGCTTCGGTCTCGCCCAAAACGCCATTGATGGGAACCGAAATCCAGACCTGAGGAAGGGCTCCTGCACAGAAACGGAAAAGGAGAGCTCCCCCTGGTGGAGGCTGAACCTGCATCACAGACAGACTGTCTCCTCCGTTGCTCTGACGAACCGAGGAGACTGCTGCGCTGAAAATCTGGACGGTGCCGAGATCCGGATTGGTGATTCCCTAGAGAATGATGGGAAAGATAATCCACTGTGTGCCACAGTGTCCTCCATCCCTGCTGGACAGACGGAGCACTATATCTGCAGCGGTCTGCTGGAGGGCAGCTACGTGACCGTGGTTCTGCCGGGAGAGGAGAGGACTCTGAGCCTGTGTGAGGTGGAGGTGTTCGGGATGCCAGCGGACCAGTGCGTCGATGCATTCgaataaaatttttttttatgtttatttacttatttactcatTACTACAAAATGTATTATTCGAAACTGTAGCCAATTAAATTCAAGATTTCACTAAACTTTAAA
>XM_022676182.1
CGAGCTTGGGCTCACACCACACTAGTGATCCAAACCTGGAACCACATCCcagctgaagagagagagagagagagagagACAGACAGGGCTGATCTCAGATTCTAAGATGATCCTCACTGTGCTGTTGTTGCTGGCCCTCCTGCCTGGACCAGGAGTCACTGCCATCAGAGAGAACATTGCAATTGGAGCCAGAGCAGTTCAGTCGTCTACATACGATTCAGGACACGCTCAGAATGCTGTAGACGGCAACAGCAATGCAAACTACTGGAAAGGCTCATGCAGTCACACTAGTTATGAGACTGATCCCTGGTGGAGACTGGAGTTGCCTGCAGTCTACAACATAACCTCCGTAACCATCGTTAACCGCGGAGACTGCTGTGGAAAGCGGATAATTGGAGCAGAGATTCGCATCGGAAACACCCTTGAGAACAACGGCAACAGAAACAAACTagttGCCGTTATAAACTCCTTCCCATCTGGCGTCACAAATTCATTCAACTTTAAAGCCACTGAGGGACAGTTTGTTAACATTTTCTTACCAGGATCGCGCAAAATACTCACTTTGTGTGAGGTGCAGGTGTTTTcagATGAGGAGGTGATCAGTCAGTCTCCTGATTTCTATGACAATATCGCGGTTGGGGCCAAAGCAGTCCAGTCGTCTACAACCCCTACTTTAGGAAACCCTGAGTACGCTGTAGACGGCAACACTGATACAGACTCCAGAAGAGGCTCATGCAGTCACACTCTGACTGAGGCCAATCCCTGGTGGAGGGTTGAGCTGCCTGGCGTCTGCAACGTGACCTCTGTCACCATCGTCAACCGGGAAGACTGCTGTTCCGACAGGATAAAGGGAGCTCAGATTCACATCGGAAACAGCCTCAAGAACAAAGGGAACGACAACaagctAGTTGCAGTGATTGGCCCCACATTGTCTGAAATCACAATGACGTACAAGTTCAAAGCCACCAGAGGACGGTTTGTTAATATTTTCTTACCAGGAGAAGACAAAATACTCAGTCTGTGTGAGGTGAAGGTGTTTACAGATGAAGAATTCAGCCCAGAAGACTTTCATGTTCATGATTATGGTGAGCTGCCCAATCTTGCCCCCAAAGGAAGAGCCACTCAGTCCAGTCTGCTCACCTCTGGGAAGTTCCCAGGCTTCGGTCTCGCCCAAAACGCCATTGATGGGAACCGAAATCCAGACCTGAGGAAGGGCTCCTGCACAGAAACGGAAAAGGAGAGCTCCCCCTGGTGGAGGCTGAACCTGCATCACAGACAGACTGTCTCCTCCGTTGCTCTGACGAACCGAGGAGACTGCTGCGCTGAAAATCTGGACGGTGCCGAGATCCGGATTGGTGATTCCCTAGAGAATGATGGGAAAGATAATCCACTGTGTGCCACAGTGTCCTCCATCCCTGCTGGACAGACGGAGCACTATATCTGCAGCGGTCTGCTGGAGGGCAGCTACGTGACCGTGGTTCTGCCGGGAGAGGAGAGGACTCTGAGCCTGTGTGAGGTGGAGGTGTTCGGGATGCCAGCGGACCAGTGCGTCGATGCATTCgaataaaatttttttttatgtttatttacttatttactcatTACTACAAAATGTATTATTCGAAACTGTAGCCAATTAAATTCAAGATTTCACTAAACTTTAAA

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process

KEGG:

id description
ko00350 Tyrosine metabolism
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676180.1 False 1635 mRNA 0.49 10 30946765 30954080
XM_022676182.1 True 1665 mRNA 0.49 10 30946765 30954116

Neighbor

gene id symbol gene type direction distance location
LOC103033392 NA coding downstream 1373 30937286 ~ 30945392 (-)
LOC103032739 NA coding downstream 62425 30882104 ~ 30884340 (-)
tmc5 tmc5 coding downstream 985973 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 1065851 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 1363503 29311410 ~ 29583262 (-)
LOC103046043 NA coding upstream 2077 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 10432 30964548 ~ 30966942 (-)
LOC103046348 NA coding upstream 13153 30967269 ~ 30970158 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding upstream 104652 31058768 ~ 31083292 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding upstream 152192 31106308 ~ 31125146 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 18376 30924840 ~ 30928389 (-)
G14778 NA non-coding downstream 42067 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 178945 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 274296 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 280316 30661819 ~ 30666449 (-)
G14820 NA non-coding upstream 29424 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 94240 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 226870 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 227710 31181826 ~ 31229953 (-)
G14879 NA non-coding upstream 258453 31212569 ~ 31214056 (-)
trnap-agg_1 NA other downstream 22678 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 23516 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 54117 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 220844 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 678415 30261018 ~ 30268350 (-)
G14839 NA other upstream 99648 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1168106 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1859932 32814048 ~ 32820804 (-)
G15497 NA other upstream 3180476 34134592 ~ 34136732 (-)
evc2 NA other upstream 3197707 34151823 ~ 34172017 (-)

Expression


Co-expression Network