LOC103046043


Basic Information

Item Value
gene id LOC103046043
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30956193 ~ 30962532 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676188.1
CTGATACAGACATCACAGTGACGATCCTAAACCTGAAGCACACTGTTGCTGGAGAACGACGCTGCTGAATTAATCACACGGTGTAAGGAGCAGCAACAGTGTTCAAACCATGGTGAAAACCTAAAACAGGCAGCACTGGACAGCAGTGATGTATAGTATTgtgaacaatataaaataactaGTTTGAAACTAAGATGATCCTAACTGTGCTGTTGTTGATTGGGCTCCTGCCTGGACCTGGAGTCACTGCCTCCAAAGAGAACATCGCAGTCAGATCCAGAGCGGTCCAGTCGTCTACATATAATGAATTAGCAGACGCTGAGCATGCTGTCGACGGCAACATTGATTCAAACTATATGAGAGGCTCATGCACTCACACAATGCCTGAAACAGATCCCTGGTTGAGGGTGGAGCTGCCTGGAGTCTACAAAATAACATCTGTTACCATCTTTAACCGTGGAGACTGCTGCAGTGAGAGGATACACGGAGCTCAGGTTCGCATCGGGAACAGCCTCAAGAACAACGGCAACGAAAACAAGATAGTTGCTGTTATTGGTCCAACGTGGCTTGAAGTCTCTAAAACATACAGGTTTAAACCCACTGAGGGGCGCTATGTTAATATTTTCCTACCAGGAGAGGAGAAAGTCCTCACTTTGTGTGAGGTGCAGGTGTTTGCAGATGAGGAAGTGGACCCTAAATTACTTGATCTACATGAAAACCTTGCACTCGGGGCCAAAGCAGTTCAGTCGTCTACATATGATTTTTTAGGAGACGCTGCGAATGCAGTAGATGGCAACAGTAACACAAACTACTTGAAAAAGTCATGCAGTCACACCCATTCTGATAACAACCCCTGGTTGAGGGTGGAGCTTCCAGACGTCTATAACGTAACGTCCGTTACCATTGTGAACCGTAAAGACTGCTGTGGAGACCGAATAAACGGAGCTCAGATTCGCATCGGGAACAGCCTCGACAACAAAGGCAACGACAACAAACTAGTTGCTGTTATTGGTCCAATGGGGTCTGAGGTCATAAAAACGTACAAGTTCAAAGCCACCGAGGGGCGGTTTGTTAATATTTTCTTACCAGGTCAGCGCAAAATACTCACTCTGTGTGAGGTGAAGGTGTATGCAGATGAGATATTCGACCCTAAATCATTTTATCTACATGACAAAGAAGACCTGGATAACATTGCTCTCAGAGGAACAGCCACCCAGTCCAGCCTGCACAGTTCAGAGATCTCAGCCGGCTTTGGTCTGCCCCTAAACGCCATTGACGGGAACCGAAATTCAGACCTGATGAAGGGTTCCTGCATGCGAACGCAACAGGAGACGTCCCCCTGGTGGAGGCTGAGCCTGCCTCGCAGATACGTCATCAGTTCTGTCGCACTGACCAATCGAGGAGACTGCTGTTCAGAACATGTGGACGGGGCGGAGATCCGGATTGGTGATTCCCTGGAGAACGAGGGGAAAGATAATCCACTgTGCACCATAGTGTCCTCCATCCCTGCTGGACAGACTGAGCATTATAACTGCACAGATCTGCTGGAGGGCAGCTACGTGACCGTGGTTCTGCCGGGAGAGGAGAGGACTCTGAGCCTGTGTGAGGTGGAGGTGTTCGGGCTTCCGGTTGCCCGTTGTGGATTTTtggtctaataaaaaaaattaaattcaataaaattTAACTGTATTCATTTCACCTGAA

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process

KEGG:

id description
ko00350 Tyrosine metabolism
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676188.1 True 1704 mRNA 0.48 11 30956193 30962532

Neighbor

gene id symbol gene type direction distance location
LOC111193890 NA coding downstream 2077 30946765 ~ 30954116 (-)
LOC103033392 NA coding downstream 10801 30937286 ~ 30945392 (-)
LOC103032739 NA coding downstream 71853 30882104 ~ 30884340 (-)
tmc5 tmc5 coding downstream 995401 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 1075279 29878041 ~ 29880914 (-)
LOC111193897 LOC108413061 coding upstream 2016 30964548 ~ 30966942 (-)
LOC103046348 NA coding upstream 4737 30967269 ~ 30970158 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding upstream 96236 31058768 ~ 31083292 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding upstream 143776 31106308 ~ 31125146 (-)
LOC107197536 LOC107086207 coding upstream 253700 31216232 ~ 31222423 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 27804 30924840 ~ 30928389 (-)
G14778 NA non-coding downstream 51495 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 188373 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 283724 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 289744 30661819 ~ 30666449 (-)
G14820 NA non-coding upstream 21008 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 85824 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 218454 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 219294 31181826 ~ 31229953 (-)
G14879 NA non-coding upstream 250037 31212569 ~ 31214056 (-)
trnap-agg_1 NA other downstream 32106 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 32944 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 63545 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 230272 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 687843 30261018 ~ 30268350 (-)
G14839 NA other upstream 91232 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1159690 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1851516 32814048 ~ 32820804 (-)
G15497 NA other upstream 3172060 34134592 ~ 34136732 (-)
evc2 NA other upstream 3189291 34151823 ~ 34172017 (-)

Expression


Co-expression Network