LOC111193897 (LOC108413061)


Basic Information

Item Value
gene id LOC111193897
gene name LOC108413061
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30964548 ~ 30966942 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676197.1
GTACCTATGTATTAACAATACCACTGTCATGTAACTCTACCATGTGTCGTTTTGCAGCGTTGACTGATGCACACAAGGCATCGCTGCTTCCTGAGGAAGCCGGTTTGCGTAACCTTGCCATCAAAGGAAGAGCCACCCAGTCCAGTCTGAACGGCTCTGGCATGTGGGCCGGCATCGGTGTCGCTGGAAACGCCATCGATGGGAACCGAAACTCGGCCCTCGCCAAAGGTTCCTGCACCCAAACAGCAAATGAGAGCTCTCCTTGGTGGAGGGTGAACCTCCATCTAAAGTACAGTATCTCTGCTGTGGCACTGACCAACCGAGGGGACTGCTGTTCAGACGGTTTGGATGGTGCCGAGATTCGGATTGGGAATTCCATAGAGAACGAAGGAAAAGATAATCCAATTTGTGACACAGTGTCCTCCATCCCTGCTGGACAGACTGTGTATTATAACTGCAGCAGTCTGCTGGAGGGCAGCTATGTGACCGTGGTCCTGCCCAGAGAGGGAACCCTGAGCCTGTGTGAGGTGGAGGTGTTCGGTTACTCTCGTATCTATGcgattacagaataaaagtagTAGACCTCAACAGAAATGTTTCTGAAATCATTTTCTCCATTAAgttgaaaaaataaagtttgtttaaataaagcttttcatttaaaagaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC108413061

GO:

id name namespace
GO:0010185 regulation of cellular defense response biological_process
GO:0001868 regulation of complement activation, lectin pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0042806 fucose binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676197.1 True 671 mRNA 0.48 3 30964548 30966942

Neighbor

gene id symbol gene type direction distance location
LOC103046043 NA coding downstream 2016 30956193 ~ 30962532 (-)
LOC111193890 NA coding downstream 10432 30946765 ~ 30954116 (-)
LOC103033392 NA coding downstream 19156 30937286 ~ 30945392 (-)
LOC103032739 NA coding downstream 80208 30882104 ~ 30884340 (-)
tmc5 tmc5 coding downstream 1003756 29942423 ~ 29960792 (-)
LOC103046348 NA coding upstream 327 30967269 ~ 30970158 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding upstream 91826 31058768 ~ 31083292 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding upstream 139366 31106308 ~ 31125146 (-)
LOC107197536 LOC107086207 coding upstream 249290 31216232 ~ 31222423 (-)
pdlim7 pdlim7 coding upstream 913852 31880794 ~ 31943297 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 36159 30924840 ~ 30928389 (-)
G14778 NA non-coding downstream 59850 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 196728 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 292079 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 298099 30661819 ~ 30666449 (-)
G14820 NA non-coding upstream 16598 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 81414 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 214044 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 214884 31181826 ~ 31229953 (-)
G14879 NA non-coding upstream 245627 31212569 ~ 31214056 (-)
trnap-agg_1 NA other downstream 40461 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 41299 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 71900 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 238627 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 696198 30261018 ~ 30268350 (-)
G14839 NA other upstream 86822 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1155280 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1847106 32814048 ~ 32820804 (-)
G15497 NA other upstream 3167650 34134592 ~ 34136732 (-)
evc2 NA other upstream 3184881 34151823 ~ 34172017 (-)

Expression


Co-expression Network