polr2b (polr2b,LOC102791558)


Basic Information

Item Value
gene id polr2b
gene name polr2b,LOC102791558
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32622181 ~ 32638918 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676418.1
ACAATTCGGTCGCGAGCACCAGAAGTGACGCCACGCGCGCGCCGGCGGCTCGGTGAACAGATACAGCGCGTTTTAACGGGacgtttttgtgtttgtttaccgTAAACAAGGCTGTAAACAACAGTAAACATCATGTATGATCAGGATGAAGaTATCCAgtatgatgaagatgatgatgaaatCACCCCAGATCTGTGGCAGGAAGCCTGCTGGATTGTTATCAGCTCCTACTTTGATGAGAAGGGCCTGGTGCGACAGCAGCTGGACTCATTTGATGAGTTTATTCAGATGTCTGTTCAGAGGATCGTGGAGGATGCTCCACCCATAGACCTACAGGCTGAAGCTCAGCACACCTCCGGAGAGGTGGAGGAACCGcctcGGTATCTGCTGAAGTTTGAGCAGATCTATTTGTCCAAACCAACACACTGGGAAagagatggagctccatcacccATGATGCCCAATGAGGCCAGACTCCGAAACCTCACGTACTCGGCTCCTCTGTACGTGGACATCACCAAGACCATCATAAAGGAGGGAGAGGAGCAGCTTCAGACGCAGCACCAGAAAACCTTCATCGGCAAAATTCCCATCATGCTCCGCTCCACCTACTGTCTCCTCAGCGGCCTGACGGACCGTGATCTCTGTGAGCTGAACGAGTGTCCCCTGGACCCGGGGGGCTACTTCATCATCAACGGCTCCGAGAAGGTTCTTATCGCTCAGGAGAAGATGGCCACTAACACGGTGTATGTGTTTGCGAAAAAGGACTCTAAGTATGCGTACACGGCCGAGTGCAGGTCCTGCCTGGAGAACTCCTCCAGACCCACCAGCTCCATCTGGGTCAGCATGATGGCCAGAGGAGGACAGggagtGAAGAAGAGCGCTATCGGTCAGAGAATTGTCTCTACGCTGCCGTACATCAGACAGGAAGTGCCCATCATCATCGTGTTCAGAGCTCTGGGATTTGTGTCCGACAGGGACATCCTGGAGCACATCATCTACGACTTTGATGACCCAGAGATGATGGAGATGGTGAAGCCGTCTCTGGACGAGGCCTTCGTGATCCAGGAGCAGAACGTAGCTCTGAACTTCATCGGATCCAGAGGAGCCAAACCTGGAGTCACCAAGGAGAGGAGGATTAAATACGCTAAAGAGGTTCTGCAGAAAGAGGTTCTGCCCCATGTGGGAGTTTCTGACTTCTGTGAGACAAAGAAAGCCTACTTTTTAGGTTATATGGTGCACAGACTGCTGCTGGCAGCTCTGGGCAGAAGAGAGCTGGATGACCGAGATCATTACGGAAACAAAAGGCTGGACCTGGCCGGCCCTCTGCTGGCCTTCCTCTTCAGAGGAATGTTTAAGAACCTGCTGAAGGAGATCAGGATCTACGCACAGAAGTTTATCGCGGGGAAGGACTTTAACCTGGAGCTGGCCATCAAAACCCGCATCATCTCTGATGGGCTGAAGTATTCTCTGGCCACGGGCAACTGGGGCGATGTGAAAAAGGCTCACCAGGCCAGAGCTGGAGTGTCTCAGGTGTTGAACAGACTGACGTTCGCCTCTACGTTATCACACTTGCGGCGTGTAAACTCTCCCATCGGCCGAGACGGAAAGCTGGCCAAACCCAGGCAACTCCACAACACACTGTGGGGCATGGTGTGCCCCGCCGAGACCCCAGAGGGTCACGCTGTAGGTCTGGTGAAGAACCTTGCACTCATGGCCTACATCTCTGTCGGGTCTCAACCTTCCCCCATCCTGGAGTTCTTGGAGGAGTGGAGCATGGAGAACCTGGAGGAAATCTCACCTGCAGCCATTGCAGATGCTACTAAGATCTTTGTGAACGGCTGCTGGGTGGGCATCCACAAAGATCCTGAACAGCTGATGAACACCCTGAGGAAGCTGAGGAGACAGATGGACATCATTGTGTCTGAGgtGTCGATGATCCGAGACATCAGAGAGCGAGAGATCCGTATTTATACAGATGCTGGGCGTATTTGCAGACCTCTGCTGATTGTGGAGAAGCAGAAGCTCTTACTGAAGAGGCGCCACATCGATCAGCTGAAAGAGCGAGAGTACAACAactacagtTGGCAGGACCTGGTGGCGAGCGGGGTGGTGGAGTATATTGATACGCTGGAGGAAGAGACGGTGATGCTGGCCATGACTCCAGATGATCTCCAGGAGAAGGGTGTGGCCTATTGCTCCACCTACACACACTGTGAGATCCACCCCTCGATGATCCTGGGAGTGTGTGCATCCATTATACCGTTCCCCGATCACAatcagTCTCCCAGGAACACGTACCAGTCTGCTATGGGGAAGCAGGCTATGGGAGTCTACATCACCAACTTCCATGTACGTATGGACACCCTGGCCCACGTGCTGTACTACCCCCAGAAGCCTCTGGTCACCACGCGCTCTATGGAGTACCTGCGCTTCCGAGAGCTGCCAGCAGgCATCAACTCCATTGTGGCCATTGCCTCGTACACTGGCTACAATCAGGAGGACTCTGTCATCATGAACCGCTCCGCTGTGGACCGAGGATTCTTCAGGTCTGTGTTCTACCGCTCCTATAAAGAGCAGGAGTCTAAGAAAGGCTTTGATCAGGAGGAGATCTTCGAGAAGCCCAAGCGTGAGGAGTGTCAAGGCATGCGGCATGCGATCTACGATAAGCTGGATGATGACGGGCTGATCGCGCCGGGCGTGCGAGTGTCCGGTGAGGACGTGATCATCGGTAAAACGGTCACTCTGCCCGAGAACGACGACGAGCTGGACAGCACGAACCGCCGCTACACCAAGAGAGACTGCAGCACTTTCCTCCGCACCAGTGAGACCGGCATCGTCGACCAGGTCATGGTCACCCTCAACCAGGAGGGCTACAAGTTCTGCAAGATCAGGGTTCGTTCAGTCCGGATCCCTCAGATCGGGGATAAGTTTGCCAGTCGTCACGGGCAGAAAGGAACCTGTGGAATTCAGTACAGGCAGGAGgacaTGCCTTTTACGTGTGAGGGAATCACCCCCGACATCATCATCAAcccccacgccatcccctccaGAATGACAGTTGGTCACTTGATCGAGTGTCTGCAGGGGAAGGTTTCTGCAAACAAAGGGGAGATTGGTGACGCCACGCCGTTTAACGACGCCGTGAACGTGCAGAAAGTCTCCAACCTGCTGTCTGAGTACGGCTACCACCTGAGAGGAAAcgagGTGCTGTACAATGGTTTCACAGGTCGCAAACTGACCTCTCAGATCTTCGTCGGACCCACTTACTACCAGCGACTGAAGCACATGGTGGACGATAAGATCCACTCGCGAGCTCGCGGCCCCGTCCAGATCCTCAACAGGCAGCCTATGGAGGGCAGATCACGTGATGGTGGTCTGCGTTTCGGAGAGATGGAGCGAGATTGTCAGATAGCTCACGGAGCAGCACAGTTCCTGAGGGAGCGTCTGTTCGAGGCGTCCGACCCCTACCAGGTGCACGTGTGCAACCTGTGCGGACTAATGGCCATCGCCAACACGCGCACTCACACTTACGAGTGCAGGGGCTGCAGAAACAAGACTCAGATTTCTCTGGTCCGGCTGCCGTACGCCTGTAAGCTTCTGTTTCAGGAGTTGATGTCTATGAGTATTGCTCCTCGTATGATGACCAGCTGAACGCCTGAACTGTTCAGTTATGAGGAGAAATAGAGGAGAAACTGGGCTCATCATACTGAAGAGGAGAGAAACTGAATGCACTTGTAGCCCAGTGTTCGTTCATCTGCGTCTCCAGAGGATTTCTGATCTGTTATCAGTTTTCGATGTGAAATCTGTTCTTAGTcgtattttttgtaaaatgttgaatcaaataaagcagtttctttttagatatttta

Function

symbol description
polr2b Predicted to enable several functions, including DNA binding activity; metal ion binding activity; and ribonucleoside binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2B (RNA polymerase II subunit B).

NR:

description
DNA-directed RNA polymerase II subunit RPB2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG:

id description
K03010 RPB2, POLR2B; DNA-directed RNA polymerase II subunit RPB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676418.1 True 3872 mRNA 0.53 26 32622181 32638918

Neighbor

gene id symbol gene type direction distance location
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding downstream 449241 32160819 ~ 32172940 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding downstream 503023 32074166 ~ 32119158 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding downstream 567009 32046109 ~ 32055172 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding downstream 626669 31973592 ~ 31995512 (-)
higd2a higd2a coding downstream 663725 31955606 ~ 31958456 (-)
rest NA coding upstream 10145 32649063 ~ 32658650 (-)
LOC103031569 NA coding upstream 95367 32734285 ~ 32750765 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding upstream 195578 32834496 ~ 32858295 (-)
LOC103029668 NA coding upstream 221765 32860683 ~ 32865337 (-)
LOC103029347 NA coding upstream 282107 32921025 ~ 32943593 (-)
G15206 NA non-coding downstream 746 32564362 ~ 32621435 (-)
G15095 NA non-coding downstream 171618 32450358 ~ 32450563 (-)
G15090 NA non-coding downstream 273387 32347350 ~ 32348794 (-)
G15050 NA non-coding downstream 488399 32121276 ~ 32133782 (-)
G15049 NA non-coding downstream 535256 32069162 ~ 32086925 (-)
G15233 NA non-coding upstream 77712 32716630 ~ 32716898 (-)
LOC103032939 NA non-coding upstream 127179 32766097 ~ 32766565 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding upstream 145271 32784189 ~ 32794342 (-)
G15249 NA non-coding upstream 156460 32795378 ~ 32795830 (-)
G15273 NA non-coding upstream 258509 32897427 ~ 32912129 (-)
nfkb1 nfkb1,LOC106536450 other downstream 462218 32122222 ~ 32159963 (-)
G14839 NA other downstream 1566678 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1698094 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1698932 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1729533 30889606 ~ 30892648 (-)
hopx hopx,LOC107552340 other upstream 175130 32814048 ~ 32820804 (-)
G15497 NA other upstream 1495674 34134592 ~ 34136732 (-)
evc2 NA other upstream 1512905 34151823 ~ 34172017 (-)
G15498 NA other upstream 1602408 34241326 ~ 34242318 (-)

Expression


Co-expression Network