rest


Basic Information

Item Value
gene id rest
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32649063 ~ 32658650 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676427.1
GCGAGCTGCAGAGCACGGGGATGTGTTGGAATGCGCGCGAGCTGCTGGAACTTCTGTAAACTAGTAAACTCGagttttacttaatttctgctcATAAAACCCCGATAATACCGAACTAAAGACCGGGATCAGCGCGCGGGAGGAGCGGAGAGACCCCGGCTGATTGAGCATGGCTGCTCAGGCAGTGTTCCCCGTGACCTCGGGCATTTTTGTGCCATCTTGTGGAATCCCATTGCCCGAAGATGGCCATGAAATCACCGAACTCCCCCGCACAGATCTGCAAACACCTCAGCTGGTGTTGCTGGCCAATGTGGCTTTGACATCTGAGGCATCTCCAGGCGAGTATGCTGCGGAGGAGAAGGAAATGGTGGAATTAAAGAACGTTGGCTGCAGCAGCTACTCGGACagcgaggaggaggagaacacgGTTTCCTACAACTATGAGAACTCTGAAAACTCTGCGTACCTTGAGGATGATGCTACAGAGCATGCCGAACCAGAGCCGGTGGAGGGAATTATCGTGAAGGTCACCGTCGGTGGCAGCGAGACCTCGCCAGAGGACCTCTCGAAATCCCCAAACTCAAGCCCGACTGAACGCACAACTGGCGGGAAACGTAAGCAGAACCAGGTGATTGGGCCCGCAGCCTCGGCAGAGCCtcccaagaagaagaagaagccttTCTACTGCAAACCCTGCCAGTTCCAGGCCGAATGCGAGGAGGATTTCATTCGCCACATCCGCACCCACAGTGCCAAGAAGCTCATCGTGGTCAACAGTATGGGAGAGTCCGACGACGAGGCGACGAACGACCCGGCTAAGCAGCAGGGTTCAGAAAACGGCGCTTCAACATCCAAGGGGGTGATCCGGTGTGAGCGCTGTGGCTACAACACCAACCGCTATGATCACTACATGGCTCACCTCCGGCACCACAAGAATGAAGGGGATGACCAGAGGGTGTTTAGGTGCACAATCTGCCCCTACTCTACCGTCAGCCAGTACCACTGGAAGAAGCATCTGAGGAATCATTTTCCCAGCAAGCTTTTTACCTGCAACCAGTGCTCTTACTTCTCTGACCGGAAAAATAACTACATACAGCACATTCGCACCCACACAGGTGAGCGTCCCTTCCAGTGTATATACTGTGACTACTCAAGTTCCCAGAAGACTCATTTGACCAGACACATGAGAACGCACTCAGGTGAGAGGCCTTTCAAATGTGACAGCTGCAGCTACTTGGCAGCCAATCAACATGAGGTGACCCGCCATGCCAGACAGGTCCATAATGGGCCCAAGCCGCTGAGCTGCCCTTACTGCCAGTACAAGACGGCTGACCGCAGCaactttaaaaagcatgttgaGCTACATGTAAACCCACGCCAGTTTTTGTGTCCAGTGTGCAAGTATGCGGCGTCCAAGAAATGCAACCTGCAGTACCACATCAAATCCCGACATCCTGGATGCTCAGATATCTCCATGGATGTTTCAAAAGTTAGGTTGAGGGTTAAGAAGGCAGATGGAGACGACTGTGCCAGTCCTACAAATGGAAAACAGTCCGAAGATTTGGGGCAGCAGAATGAAGAATTGGAGTCAGACACAGACTCATGCGGTGCCATCAATCTTTCAATCAAAAAGAAAGGTAGAGCTAGTTCTGTGCATACTGCAGACACAGGGACTACCAAGAAAACTACAGATGGACTTAGGAGAGAGAGATCTGGAAAGACTATTCATCACACATATGAGAAAAAGTCACAAAAGAAGACTGCACCGAagaatgaggggaaagaaatgAGTATCAAGAAAGTGAAAAGCAAAGCAGTACAGAAGCCTGACCCCACCGAGAAAGAACCGGCAAGCTCTGCTcgaaaacaaaacagtaaaaaggacaaggagctgaaaaaagtggaACGACCTACCCCTAAATCTGCTGAGAAAGTCATCAAGCGTCACTCCAGAAAAGAGAAGGCTACTGAGGACACCTGCGAGAAGGAGACAACTACCAGAGATCAGACTGTTACAGAAGAGGTGCAAATATTGGATCTGGAGAACAGACAAGAAACCGAAAGACTGCAAAAGGAAACAAGAGGAAACACTCAGAAGCAGAAAGAGGAGAACGAGAAGCTTCAGAAGGTGGATAAGAAAGAGAATAACGCCAAGGAATCCAAGAAAACTCAGCTCAAGAGGCAGTCGAGAGTGGCAAAGATTGATGCTGAAGAAAAGACTTGTGATATTGTTAAGACAAACGGACTAAAACGTAAAGCAGAGACCACAAACTCTCCACAGATCGATTCCTCCAACAAGGATGGCTCACCAGAAAAAGTAAAACGCAGGAAAGTGAttgaatctgattcagaaaagCCATCCTCAAGTGCTGCCACACCTGCAGAGGATAGAGTCTCAAAGGGTAACAGCAATAAGAGCAGAAAGAGTACAAATAAGGCAGATGTGTGTGTAGCAGAGTCTGAAGTACCTAAACAAGTGAAAAACGTCTCTGTAGGCAAAATAACAAAACCTTCACAAGTGGAAACATCACTTTCTACAGAACCTGAACGAGAACCTGAGCAGCCTACCCTAATGCAGCAACAGGTGGAGAAGCCTGCCTCACAGCAAAAGATGGAGAAGACTTCCTTGCCACCAAAGCTGAAGCAGCCTACCTTGCAGCAACATCTGGAGAAGCTTGCTTTACAGCGAAACGCAGAGAAGTCATCTGTGAAGCAGCATTCGGAAAAGACTTCCATGCAGCAAAACCCAGAGAAGCCTTCCTTGCAACAAAACCTGGAGAAGAGTGCCTCGCAGTTGGAGAAGCCTGTCCTGCAGCCACAGCTGGAGAAGCCATCTATGAAGCAGCAGCCGATGAAACCTGCCTTGCGACAACAGCCAGAGACGCCTTCCTTGCAGAAGTGCCTGGAGAAGCCTGCCTTGCGACAAGACCAAGAGAAGTCTGCCTCGCTGGAGCATCCAGAGAATCCTTCCTTGCAGAAACAACAAGAAAAGGTTGCATTGCAGAAACAGCCAGAGAAGGTTGCACTACAGCAACAGCCAGAGAAGCCTTCAATGCAGAAACATCTGGAGAAGCCTGCCTTGCAGCAGTGCCCAAATAAGCCTGTGTCGCAGAAACAGCCAGAGAAGCCTGCCTACCAGAAACAGGCAGAGAAGCCTGCCTCCCAGAAGCAGCCAGGGACTCCTGCTTCACAGCAACAGCCAGAGAAGCCTGCCTCGTGGAAACAGCCAGAGAATCCTGCTTTGCAGAAACAGCTAGAGAATCCTGCCTCCCAAAAACAGGCGGAGAAGTCTTCGTCACAGAAACAGCTAGAGAATCCTGCCTCCCAAAAACAGGCGGAGAAGTCTTCGTCACAGAAACAGCTAGAGAATCCTGCCTCCCAAAAACAGGCGGAGAAGCCTTCGTCACAGAAACAGGCGGAGAAGCCTTCGTCACAGAAACAGGCGGAGAAGCCTTCGTCACAGAAACAGAAACAGCCGGAGAAACCTGCCATACAGCAACACGTGGAGAAACCTATTTTACCACAAGACCTAGAAAAGCCCAGCTCAACAGAAGATAAGGCCACAAGTTGCTGCTCAACCGTAAGCAGTGAGACTGTTGCTACTAAACAGAAACCCACAATAAGAGAGACCTTACAGCAGGTTTCAGGGAAAGCCACAAAGAAGAAGGCCACTGCCAAAAGAAAGAACAGGACCACCGTTAAAGTGCAGGAAACATCACAAGTTGCTGTTGAAAGTGATGAGATCCCATCCCCGACTGAAAGTGAAGGTGACCCAGGGTTCAGCCAGGAACCCGTGGTTGAGAGTCCTACTCTGGAACTGCCTGGACCAACACGAGCCAGGCCAACAGACGCAGAGGACGACGAGGGTATCCACAGCCATGATGGAGGTAGTGACATGAGCGACTGTGCCTCGGAAGTAAGTTACGACTCAGGACTCAATGGGTTGGCGAACGGCATGGAGAAACTTCCGGAAACGCCCACTGAAGAGCTTCCGTCTCCCACCCAGCTCCTCAGTCACACTTGTGTCTTCTGTGACCGTACGTTCCCTCTGGAGATGGACTACCGGCGGCACCTGAACCGCCACCTTGTGAATGTGTATTACCTGGAGACGGCCACACAGAGAAACAAGTGATGTGTGGACTTTGTACGGAACAtttttcccttcttttttctttttaaaaactttctCAGCATTAAGCCAACAacattctctttttctggatTAATGTCCTGCACTCGTAGAACATTTTATACAATTGATGAAGTTCCAAGCAAAACATTTATTCAAGCataatcattcattcattatgtTCTGATTAACTGAGACTGTagtctttaaaagaaaagaaaatcttgtatgtttcacagtgttttaaatagtGGTGGTATTGTGCGCTTCTACGGTAATTTACGTTACATAAGAAAAAATTCCACCCACAAGATTTCTTGGGCAAAACAATGGATAATGTAAGCACTTTCTGAAGATCTGTAATGTggaaatacaatatataatttgaTCATTTGAACCATAATCAGGAAACATAGTCATAATCAGCTGAAATTTCATTTAGAAGCGCACATTTGAcacaaaactattttaaaaaacactgtagaCTACACAATTTGTGttttaatatgaaataattcaGTGGTGACAAGTAAAATTACGTAATTTAGAGGGcgttttgtgaaaaatgtttcGGTTTATTGTTGTGGTAATGCagctacactatatggacaaaagtcaAAAAAGTATTGGGAAACACCTGCTTGTTCTTGTACTAAATCAAGGGTATTGTCTTGTTTT

Function

NR:

description
RE1-silencing transcription factor

GO:

id name namespace
GO:0021785 branchiomotor neuron axon guidance biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0001764 neuron migration biological_process
GO:0021610 facial nerve morphogenesis biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09222 REST; RE1-silencing transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676427.1 True 4807 mRNA 0.48 5 32649063 32658650

Neighbor

gene id symbol gene type direction distance location
polr2b polr2b,LOC102791558 coding downstream 10145 32622181 ~ 32638918 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding downstream 476123 32160819 ~ 32172940 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding downstream 529905 32074166 ~ 32119158 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding downstream 593891 32046109 ~ 32055172 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding downstream 653551 31973592 ~ 31995512 (-)
LOC103031569 NA coding upstream 75635 32734285 ~ 32750765 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding upstream 175846 32834496 ~ 32858295 (-)
LOC103029668 NA coding upstream 202033 32860683 ~ 32865337 (-)
LOC103029347 NA coding upstream 262375 32921025 ~ 32943593 (-)
LOC103028197 NA coding upstream 297481 32956131 ~ 32959840 (-)
G15206 NA non-coding downstream 27628 32564362 ~ 32621435 (-)
G15095 NA non-coding downstream 198500 32450358 ~ 32450563 (-)
G15090 NA non-coding downstream 300269 32347350 ~ 32348794 (-)
G15050 NA non-coding downstream 515281 32121276 ~ 32133782 (-)
G15049 NA non-coding downstream 562138 32069162 ~ 32086925 (-)
G15233 NA non-coding upstream 57980 32716630 ~ 32716898 (-)
LOC103032939 NA non-coding upstream 107447 32766097 ~ 32766565 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding upstream 125539 32784189 ~ 32794342 (-)
G15249 NA non-coding upstream 136728 32795378 ~ 32795830 (-)
G15273 NA non-coding upstream 238777 32897427 ~ 32912129 (-)
nfkb1 nfkb1,LOC106536450 other downstream 489100 32122222 ~ 32159963 (-)
G14839 NA other downstream 1593560 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1724976 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1725814 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1756415 30889606 ~ 30892648 (-)
hopx hopx,LOC107552340 other upstream 155398 32814048 ~ 32820804 (-)
G15497 NA other upstream 1475942 34134592 ~ 34136732 (-)
evc2 NA other upstream 1493173 34151823 ~ 34172017 (-)
G15498 NA other upstream 1582676 34241326 ~ 34242318 (-)

Expression


Co-expression Network