LOC103031569


Basic Information

Item Value
gene id LOC103031569
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32734285 ~ 32750765 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676449.1
TGCCTCATTCTCTGCGCTCGGCCCCGAGCGACGGACCGCGGGCGAGCCGGCGATCCTCAGCCTCCCGGGTTCAGCAGAACTTCTGACGGTTCTGGTTTCAGTTCTGTGGAGAAGATGAACGCCCTGCTGATCTGTGGAGCTCTGCTGGGGTTATCTGGACcggctctggtttctgGTCTGATTACAGTAGATGATCGATGCAAATccaatcagagctgtgtgttttaTGGAGCTGTGGGACGCCCGCTGTACCTGCAGCTTCCTAAAGAGGAggaattaatattaaacaagaTCAACAGTGAAACTTCTACTGATCGTATTTTCCAatttaaaaaccaaacaatcAGAATAAAACCTCCAGATCCAAGATGGCAGTTTAATACTGAAAACAAAACCATGATAATAACCAGAGCAGAGAAAGAAGATTCAGGAAGATACGAATTAGAGACCTTTAATTCTGTAGATGGGAAAAGCACAGGCAAATTCTATCTCCATCTGATTATAGAAGCCGGGGTGTCGTCAGTGAAAGTGACGAACAGCTGTTTCTCCATTACGGAGAGAAAAGTTCACTGTTGGTCTGATGGAGATCAGATTCAGTTCAGTTGGACTCTGGATGGAAGTCCTCATAATCAGAATCTGACTGATGGGAATCAGACTCTCCTGCTGGGTGCAATATCTACTGGAAACTTCACCTGCACTGTAAAGAATCACGTCAGCAGCGGATCTGCTACTGTTATAATAGAGCCCTGTCCTGAGACTACGACTGCGGCCTCAACTACGAGTACAACGACCACTACGACCCCACCTCCTTTCAATGACTTACTTCTGATCGTGCTGGGCTTGTTTGCTGTATTGCTCATCGTGGTTGCCGTCATAGTGTGCCATATTTACAGGAAGAAACAAGCTCCAAAGACCACAGGATCACCTCAGAATGGGGAGGAACTGCTGTATGTTCATGTCAATCATAAACCCAAACCCAAAGACGGGGAGGAAGGAACCAGCAGACCAGCTCGAGTTCAGGAGGAGGAAGTGGAGTACGCCTCGGTCGACAGGCAGCccaagcagaagaagaagaagaagaaggagccGAAGGAGGAGGAAGTTCAGTACGGAGAGGTGGTCTTCAAAACCCCCGCCAAAAAGCAGCGAGAGCAGCCCGAGGAGGAGTGCGTTTACTCGCAGGTTCAGCACAAGCGGTGAGGACCACCCGCCAGCGCTAGCGCTCGGTTTACCGTCAATCTGAGAAACTCATGATCAGAAAACTGATTATGTTAGTGGTGAATGTTTATGGGTGCTTCTTAACatgttactgttttatttatacattattataccaTTAATTATAAAGCTATGTaagaaatgtacattttatgtttgataagaaacaaaaaaagggtattttttattaatgtgtaataaacCCTTAACTAAGTATCAATAACACATTAACTACATATCAGTGCATTAGCAGTAGTTTTAGCTTCATGAGTGAGGCTAAATACATTAATCAAATCTTAACCCAGTCTTACCCAAAgcctaattctaattctaatccTGGCCCTAGCCCTAATTTTAACCTCAACTCAGAACCTGATTCTAACCTCAACCTCAACTCAAAACCTAAAACCAAACATCATTCTAGTCCAAGTCATAACATTACCTTCAATTAAAACATAATCCTAAACTCAATCTCAACCCTTAATTCTAACTTTATCAATAACCTTAATCACAAACTTAATCCTAACCATCATCCTATCCCTGATTCTAATATTACCATCAATTACAACATAGtcctaaactcaacctaaacccaaattttgaacttaaacttaacctcaatcctaaacctaatcctaaccatcATTCTATCTCTGATTCTAACATTAAATCAATTACCCTCAATTAAAAAATAGtcctaaactcaacctaaaccCAAAAACTAGTGCAAACTATCATACTGATCTTCAAAATCGTCCTAAACTCATTCGCAACCCAAATTCTTACCTTAACCTCAACCTTAATCCCTAAGCCTAATTCTAGTCTCAACCTCAACCCCAAAACTAATCCTAACCATCATCCAATCCCTAATCCTAACATTACCCTCTATTTAAAAATAGTCCTAAAATCAATCATAACTGAAATTCTGACCTTAATTTCAATCTTaatccaaaacctaatcctaaacaTCATTCTTGCCCTAGTCCTATTCTAACCTCAACCTCatccctaaacctaatcctagtCCCAAACTCAAACTAAAAACTAATCCTAACCATAATCCTATCCCTGATTCTAACATAAAAAtcctaaactcaacctaaacctaaaatctaCTGAAAACTATCATCCTAGTCTTAGTCACGACATAAATAGtcctaaattctaaataaatctaaatcttAGCCTTAACTTTaatccaaaacctaatcctagaCATAGTTCTAGTCCTAGTCCTAATGTAACCTCAACCTCATCACTAAACCTAATCCCAGTCTTAACCTCAAACccaaacctaatcctaaccatcATCCTACTTCTAATTCTAATTAATTCTAAATACCTTTAACTaaaactcaacctaaacctaaaatctaCTGAGAACTATGATCCTAGTCTTAGTCACATTAGCCTCTATTAAAATAGTCTTAAACTCAATTGCAACCCAAATCTTAACCTTAACATCAACCCTAATTCAGAACCTAATCCCACACATCATTCTTTCCCTAGTCCTAAACTAACCCTAAGCCTGATCCTAACATTAACCTCAATTTAAAAAGTAGTCTTAAAATCACCTGTATTACAGTCGTTAGGTGATCAATAATTTCTCAGATTAACATCTGCAGATCTAATTTTTTATAATCTATATTGATAAAATCAACCCAATTGACAGTAAGTTCCTTTATGGtaattgtttatttcatttaaaaagtacCC

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676449.1 True 2934 mRNA 0.39 7 32734285 32750765

Neighbor

gene id symbol gene type direction distance location
rest NA coding downstream 75635 32649063 ~ 32658650 (-)
polr2b polr2b,LOC102791558 coding downstream 95367 32622181 ~ 32638918 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding downstream 561345 32160819 ~ 32172940 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding downstream 615127 32074166 ~ 32119158 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding downstream 679113 32046109 ~ 32055172 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding upstream 83731 32834496 ~ 32858295 (-)
LOC103029668 NA coding upstream 109918 32860683 ~ 32865337 (-)
LOC103029347 NA coding upstream 170260 32921025 ~ 32943593 (-)
LOC103028197 NA coding upstream 205366 32956131 ~ 32959840 (-)
LOC103027351 LOC108434533,LOC105893001 coding upstream 285084 33035849 ~ 33073381 (-)
G15233 NA non-coding downstream 17387 32716630 ~ 32716898 (-)
G15217 NA non-coding downstream 35317 32612881 ~ 32698968 (-)
G15206 NA non-coding downstream 112850 32564362 ~ 32621435 (-)
G15095 NA non-coding downstream 283722 32450358 ~ 32450563 (-)
G15090 NA non-coding downstream 385491 32347350 ~ 32348794 (-)
LOC103032939 NA non-coding upstream 15332 32766097 ~ 32766565 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding upstream 33424 32784189 ~ 32794342 (-)
G15249 NA non-coding upstream 44613 32795378 ~ 32795830 (-)
G15273 NA non-coding upstream 146662 32897427 ~ 32912129 (-)
G15272 NA non-coding upstream 155264 32906029 ~ 32908135 (-)
nfkb1 nfkb1,LOC106536450 other downstream 574322 32122222 ~ 32159963 (-)
G14839 NA other downstream 1678782 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1810198 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1811036 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1841637 30889606 ~ 30892648 (-)
hopx hopx,LOC107552340 other upstream 63283 32814048 ~ 32820804 (-)
G15497 NA other upstream 1383827 34134592 ~ 34136732 (-)
evc2 NA other upstream 1401058 34151823 ~ 34172017 (-)
G15498 NA other upstream 1490561 34241326 ~ 34242318 (-)

Expression


Co-expression Network