LOC103027351 (LOC108434533,LOC105893001)


Basic Information

Item Value
gene id LOC103027351
gene name LOC108434533,LOC105893001
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33035849 ~ 33073381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676559.1
cactcgcgcgcgcacacacacacacactcgagcGGGTATAGAGGGGAGCGTCACACTGCAGCTCTCCGTTAGAGAGAAACGACACACCGAGTCATTCTCTTCTCTGGTGAGctTTGACCAATCACGGACGATGATGTCGGTGCACAAGCCTTCGCTCAGGCGCAGCGCATCGACATTAGAATCGACCAATCGCAGCGGCTCTGGTGTGACCCCGCCCACAACCCTCAACCTGCGCTCCTCACACAACCAACAGCTGAGTCGTGACATCATAAAAGAGGGCGTGGTCTCCGTAGCCGCAGAGACACAGGGCTCAGGGCCACCTCCAAAAAGCCGCCATAAATATGCAACTACCAATCTGCAGAGCGCCATGGGATTGGAGGACACTGGCTCCGCCCCTTTTGGGCAGAACCGTACTAAACCCGCCCCTAAAAAGTCGGcctcctcctcgtctctctATTCGTCCTCTTGCGTCGCGCTTTCGCTATCTCTCTCGACGTCCAATCCGAAGCTGGCGAAGAACGGCACCAACCTGCAGCTGAAGGAGACGCAGCAGGACCTGAACAAGAAGGACAAGAACCGCAATGACGTCGGAGACTGGCCCGACAAAGAGAAGAGCGCCCCCTTCAGGCGGAGGACCAAGAGCTTCTTGGAGTACCATCGAGAAGAGGACGAAGAGACGTCCAACAGTCCAGCGGAGAAGCAGCCGGAGAGCCCGGTCCATGAAGTGGAGAAGCCACTCTTACCCCAGCTGGAGCCACAAGCCTGGGTCAAAGAGAACCGGGTGGAGGTCCACCTCACGCTGCCCCAGAACCACCTGCTCCTCCTACCTGGAGAAGACGAGGACCAGAGCCCCCCCGACTCACACCTGAGCCAGAGGGAGGGGCTCCACCCCAGCAAGGAGCAGCTGAACCGGGCGAAGGACACGGCCGGGGAGGACATGGGTTCTCCAGCCAGGCCCAGGCTGCAGGTTCTGTCCGGTCTGGGCCAGAGACTGGAGCGGGTGGAGGCGCCGACCAGGCAGGAGAagcaggtggaggaggaggtggaggaggaggaggaagactcCAGCTGGACGACTCTGTCTCAGGAGAGTCCGTCCATAGAGACGCCGCAGGAGACGGGTGTATGGAGTGACACAGTGCTGCCCCCTGGCTGGAGGGAGGTGGAAGACGTGTCTGACGTTTATTTTTGGCACATTCCCACCGGAACCACCCAGCGGGAGCGGCCCATAACCTCCACCAATCACCATCCGCCTGAGCCGGACCTGCAGCCGGAGGGGGCGCGGGGGCTCTCGTCCCTCTCTGTCCCGCCCCCCAAAACTCAGACTGAGagGCCTAGTAGCATCGTGTCGGATAGTTCTGTGGAGCCCGTGCCTTCATCATCTGCCTCTTCACCCTCCTCATCCTCACTCTGCTTGGAAGGGGCGGGGCCTGTGAACAGCTTCCTCAATAACAACTACCTGGACCTGAAGGAGGCCTCCATCCAGCCCAGCGAGtccagagagcgagagaggcgGCGAGTGGAGGAGCGGGGCGAGCGAGAGAGCGTTagagtggaggagaggagggagagagagagaggttgtgAGGGGGCTCGCTGCATGCCTTACAGCTACGTAAACCTGAGAGCGAGGGTGGGGCCTGCTCCCGCTGATACAGTCATCCCCATTGATGATCTGGAGTCTCAGgtgTACCGGGTGCGGTCTCTGGGCTGGATGGAGGTGTATGAGGCGGACATGGTGGCGGGCAGGAGCAGTGCGGTGGTCAGCGACTGCATCAGACACCTGCAGAACCCGGACACGCCCCCTTACACACCTTCACTCcgccggagagagagagcgagcgcgggagagagagaggaggggaAAGCGATGCTATTGGTTCTGCAGGACATCACGTTGACCCTGGTTGACCCCGTTGACCACACCCTTCTCCACTCCCAGCCAGTCAGCAGCATCcgtgtgtggggtgtggggcGGGACCACAGCAGGGATTTTGCGTACGTGGCTCGGGATAAGAACACGCGTGTGCTGAAATGTCACGTGTTCCAATGTGACAGTCCTGCAGAAGCTATCGCTGGCAGCCTGCACCAGATCTGCTCCAAGATTATGGCTGAACGGAAGAATGGCAAAGCGGCGGCGGGCGGCTCCTCCCTCCCCGGCTCCGACGTCCCGCTGCAAGTAGAGTTTCCCACACCAAAGACTGAACTACAACAGAGCTTCCACGTTCACTACCTGGGAGTGACTTCAGTGTCTCGCCCTATAGgcatGGACATTATAAATGGGGCGATCGACAGTCTGCTCTCGTCCACGGGGAAGGAGGACTGGACCGCAGTGCTGCTGAATGTGGAGGACGCTACGGTCAGCGTTATCAAGGAGAAGgaggaagaggaggaggaagtgcTGGTGGAGTGTCGTGTGCGTTTCCTGTCGTTTATGGGCGTGGGACGAGACATACACACTTTTGCCTTCATTATGGACACTGGGAACCAGCACTTCCAGTGTCACGTGTTCTGGTGTGAACCCAACGCAGGGACCGTGTCAGAAGCAGTGCAGTCTGCCTGCGTGctCCGGTACCAGAAATGCCTGGTGGCTCGCTCCCCCTCTCAGAAGGCAGGTTCCTCGTCTCCGCCCCCGCCGGACTCGGTCACGCGCCGCGTCACCACCAGCGTCAAACGCGGCGTCCAGTCCATCATAGACACTCTGAAAAAGAAGCCGTCCCCCGAACTGCCCAACCAATGACGGCGTAGCGCGGCCGAGCCGAGCCGGCGGGAGAACCTGTATATATACCAGTACCTCTGTACGGCCAGCGGGACGGACCTCacaacagataaacaaacaaacaaacagataaacaaataaacaaacacagagatcaAAGGAAGGAAGATCAGGAGCCCAGTGGGTGAAGCTCCACCGCTGACCATCGACCTCCGCCGTCTCAGCACGCTTCCTGAAGCATGCCCcggcctcacacacacacacacacacacacacacacacacacacactttaaggCGAGACACTGCAGACATTCGTTATATGGGCAAAATCGAAAAGAATCAGATTATAATAATCCAACTCAAAaaaatgtgtcatttttaaCCTGTCTTTATTCCCTGTTACGATTTCTGTTCtgaaaatatatgcaaattagctcatatttcattaaataatatattttatttgcatctaaacatctaaacaaaaAGTATCATTAAATTACAtgagaatttgttttatttcttttaatttgttCCTGGGCTCCCCCTTCAGTCAGGAATTAGAAATTGAACTGCAgttgtaatactgtatattgagaCTCCACTACAGGACACGCTGTGCACATGCTttcctggacaagctgagagattaaaggagtgagtgaataaaagtgagaaaaagcatgtggactgagacGGTAGAGTAAGATAACAGGATTTTACACTTATATTATGCAGTGTTACACAGTTGTGGAGAGtggagttacatagtgcagtagcaGCGTTTTTGACCCTTATTGCAGTCAATAGAGCATCACACTCATtttgattttcatttttgttttaaggACAAAATGTTACACTAAATAGCTCTATCCAGGAAGGATTCATTTCTCAGGGgattctggggtaattttctcccTTTTAtggggtttttatcctctgtgattttattcccgtccagaacgatcatgtaggt

Function

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676559.1 True 3700 mRNA 0.55 15 33035849 33073381

Neighbor

gene id symbol gene type direction distance location
LOC103028197 NA coding downstream 76009 32956131 ~ 32959840 (-)
LOC103029347 NA coding downstream 92256 32921025 ~ 32943593 (-)
LOC103029668 NA coding downstream 170512 32860683 ~ 32865337 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding downstream 177554 32834496 ~ 32858295 (-)
LOC103031569 NA coding downstream 285084 32734285 ~ 32750765 (-)
kiaa0141 NA coding upstream 1752 33075133 ~ 33084176 (-)
nudt6 nudt6,LOC107690594 coding upstream 19484 33092865 ~ 33101606 (-)
ankrd50 ankrd50 coding upstream 227852 33301233 ~ 33348173 (-)
LOC103022214 NA coding upstream 825477 33898858 ~ 33909077 (-)
LOC103031787 drd5,LOC107701828 coding upstream 966028 34039409 ~ 34041114 (-)
G15300 NA non-coding downstream 11913 33013370 ~ 33023936 (-)
G15302 NA non-coding downstream 17297 33016265 ~ 33018552 (-)
G15289 NA non-coding downstream 52489 32971537 ~ 32983360 (-)
G15276 NA non-coding downstream 122283 32912229 ~ 32913566 (-)
G15273 NA non-coding downstream 123720 32897427 ~ 32912129 (-)
G15319 NA non-coding upstream 56587 33129968 ~ 33130342 (-)
G15329 NA non-coding upstream 143027 33216408 ~ 33216763 (-)
G15330 NA non-coding upstream 145818 33219199 ~ 33219418 (-)
G15343 NA non-coding upstream 225281 33298662 ~ 33299321 (-)
G15363 NA non-coding upstream 427385 33500766 ~ 33501000 (-)
hopx hopx,LOC107552340 other downstream 215045 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 875886 32122222 ~ 32159963 (-)
G14839 NA other downstream 1980346 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 2111762 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 2112600 30914910 ~ 30923249 (-)
G15497 NA other upstream 1061211 34134592 ~ 34136732 (-)
evc2 NA other upstream 1078442 34151823 ~ 34172017 (-)
G15498 NA other upstream 1167945 34241326 ~ 34242318 (-)

Expression


Co-expression Network