CI01000009_10454695_10474253 (SLC12A8)


Basic Information

Item Value
gene id CI01000009_10454695_10474253
gene name SLC12A8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10454036 ~ 10474253 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10454695_10474253.mRNA
CTTTAAAAAATAAAACGCATCGGAATAATGTTTACAGAAGTTTAGGCCTACGTAAAAGAATAGTGGAATCTAAACGAAACCGTTGTTCTAAACGAACCGTTCAAAAGAACCGATTCACGGAAATGAGTTGGACCACCCAACCACTCAGGTGTGCCCGTGGCTCTCTCACATTCTCCACCTGCTGCTGCATCCGGGAGCATATCGCGATTACAGGTATGTGTGCGATTGTCTTTATGATTAACCAAGGAATTTACAGTTCAACAATTTCACAAAACAACATTTTATCAGTTTATTTAGGGTCGCTAGTCACTGGTGTTTTTAATATACTTCACAACGTGCCATTGCACTGTATAACTTTAGTAAAACACAAAGTCAGTACCACACAAGTTAGTCACGTGAACTTCAAATACTTTGTTTGCCTTTTATCTTAAATATTTAAATGTTGTTCAAATGCTGAATATGAATTGCCTGTCGATTGCTAGTAGTTCCCAATGTGTCACATATTAACAGACAGCTTTTGTTGCCTTTTAATGTATCTAAGCTACGTGGCCATCGCCTAGTTGGCAAATGTTGTTAAATTGCCTTTGTAAGGCAAAGTTTGTATATACTAAAGTCTTTACTTTTAGATCCAGCTACTGTAATCTTGCCCAAGAGGGAGCATGAGTCCTCAAGAATTATTCCATGAAGACGCACAGGGCTCCCAGAGTAATGCTCAACCTTGGTGGAAGGTGCAGCTCTTCGTCTGGGAGCCTGTGCTTTTCGGCACTTGGGATGGAGTCTTCACTACCTGCATGATCAACATTTTTGGGGTGGTGCTCTTTTTACGGACTGGTTGGCTTGTGGGTAACACAGGTGTGTTGCTGGGCATGCTTTTGGTGTCCATGGTGGTATTGGTCGCTGTGATTACGGTGATGTCAGGTATTGGTGTGTGTGAGTGTTGCAGCGTGGGTAACGGTGGGGTCTACTCCATGATCTCCACTGTGCTCGGAGGGAGGGTTGGAGGAACTGTGGGGCTCTTGTATGTGTTTGGACAGTGTGTGGCTGGAGCGATGTACATCACTGGTTTCGCAGAGTCCATTGCGCAGGTGCTGAGCTTACAGAGCATGTGGGCAGTGAGGGGCATCTCTGTGGCCGTTCTGCTTGGCCTGCTTGGGATTAACCTGGCCGGGGTGAAATGGATTATACGCCTTCAGTTGGTTCTGCTGGGGATATTAGCGATGTCCACTCTGGATTTTGTCATCGGGACATTTAGTCATCTAGATCCAGGGAGCTGGACTTGGGCTGCAGTGTGCACTGGCAGTGGGAAAAGGAGCTCTAAACTCAAAGACACTCTATTTAAGCGCCCAGAGTTGGACAGGAAACTGACATGCGCTCATAGTTTTGGGTTAAGGGTGTTGACCGGGCTCACCCACATTTTTGGCCTGAGACAAAAGAGCAGGCAGGAAGCAGATCCGAGTTCTTCACTAGCAGAGTCCACATCATCACTTCCTCTTCCAAATCTCTTCAGATCAGAAAGACTCACTATAAATATCCAAACTGCAATCAAAATGCTTAGAAAGGTGGCAGGGAGGGCAACAGTAATGCCCCTGCTCTTATCCGCTGTGTTAGTACGGCCTGTACTTCATGCGTATATGAAGAAAACTATTGAACTTGGCATGTATTCTCAAGAAAAAGGCCAGCCTTTGGTTTGCACGCATCTTGGCGGGGCGTCTGTCTCCCTGGGTTGTTACATAAAGGGTGGTGACGAGCATGGATTCATTGGCTATTCGGAGGAACTGCTGCGTAAGAACACCCTGCCAGACTACACAGCTGGCGAGACTTTCTTCACCGTGTTTGGGGTTTTCTTTCCTGCGGCGACAGGTGTGATGGCGGGATTCAACATGAGCTCAGATCTCCAGAGGCCCGAACACAACATCCCCGTGGGAACTCTCGCCGCAGTCTGCACCTCGTGGTTCCTGTATCTCGTCTTTGTGTTCTTACTGGGAGCCATTTGCACCAGAGAGGCGCTGCGCTATGATTTCTTGATAGCGGAAAAGGTCTCCTTGGTTGGTTTCCTGTTTTTGCTGGGCCTCTACATCTCCTCACTCGCCTCCTGCATGGGCGGCCTGTACGGTGCACCCAGGATCCTCCAGTGTATCGCTCAGGAGAGAGTCATCCCAGCTCTCGGATTTCTTGGAAAAGGGCGAGGGCCCAATAAGACGCCTGTGGCTGCCATCTGTCTGACCAGCTTGATCTCCATGGCCTTCATCTTCATTGGCCAGGTCAATGTACTGGCTCCCATTGTCACCATCAACTTCATGCTAACCTACAGCATAATTGATTATTGCTATTTCTGTGTGGTGAAATCCTATGAGCTGCAGGTCCAGCAAAGGAAGACGCTGATCAGGAGGTCGAGCTCCAGAAGATCACTCGTGTCCAGCACTCACCCCCATTATGGCAGCAGTGGAGCCATCAGTGACCCTGTGAACGGCACATTGCTGGAGTTCACCAAAGACATGGACCAAATATTTCCATTGCCCAGCACAGACACCGCTGAAGAACAGAGAGCGTCTATTCCTGCTTCCAAGGCCCGGGGCAGGAAGTCAAAGATTCCAGCTAAAGAAATGCTGATGAACAGTTTTGGGTTGGACTTGAACAGCAATGGGCCATTAGATAAAGGAAAAGATGAAAGGGAGGCGGAACAAGCTGTTGGATTAGATGATGATGCCACTAGCCAGATAGGACTTATGGAGTCTGACCTTACAGCAGGAGCCAAGAGGAAAGAGTCTTTGCCTAATTCTGGCCCAGTTGAACTTGAACAGCTCCCAAGAGAGCAGATAGACAGAAATGGTTCAGAAACAATTCTTGAAGGATCAGAAATCAGATCAATGCAAGGTTCGGTCTATGCCAGATTTTGCAATCACTGGGTTGCGTTAATTGGTTGGATGTACGCCTTGATTAACATTATATTCGCCCTTATCCTCTTTCTCTACATTGGAACAGCAAGCCCAGGTTTACCAACAGGTGCAGCAGCTCGCTTCAGTTTCTTCAGGTGGCTCAAGACCTCACTAAATAATTGGGGAAGGCGAGATGGGGCCCTTCAGGACCAGATTGTGGTGACACCCTCTTTGTCAGCTGTTGGCATGGAGACCAGGCAACTGACAGAGGAAAATGCAGACTTTGCCCTCCGTGATCGTTACCATCACTCCTCCTTTATCACCACCACAGACAAGATG

Function

symbol description
slc12a8 Predicted to enable potassium:chloride symporter activity. Acts upstream of or within cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC12A8 (solute carrier family 12 member 8).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K14428 SLC12A8, CCC9; solute carrier family 12 (potassium/chloride transporters), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10454695_10474253.mRNA True 3215 mRNA 0.48 16 10454036 10474253

Neighbor

gene id symbol gene type direction distance location
CI01000009_10445879_10449126 ZNF148 coding upstream 4786 10445879 ~ 10449250 (+)
CI01000009_10427119_10442186 SNX4 coding upstream 11785 10427119 ~ 10442251 (+)
CI01000009_10395109_10411388 OSBPL11 coding upstream 42415 10394885 ~ 10411621 (+)
CI01000009_10382813_10390177 LMLN coding upstream 63209 10382813 ~ 10390827 (+)
CI01000009_10376105_10382009 LSS coding upstream 71752 10376105 ~ 10382284 (+)
CI01000009_10477699_10485965 NA coding downstream 2405 10476658 ~ 10487353 (+)
CI01000009_10491868_10508777 NA coding downstream 17148 10491401 ~ 10509009 (+)
CI01000009_10555555_10560050 NA coding downstream 80097 10554350 ~ 10560398 (+)
CI01000009_10583435_10617169 MAP2 coding downstream 109182 10583435 ~ 10617169 (+)
CI01000009_10644080_10691030 CPS1 coding downstream 169827 10644080 ~ 10692050 (+)
G56564 NA non-coding upstream 100352 10352929 ~ 10353684 (+)
G56393 NA non-coding upstream 149551 10303482 ~ 10304485 (+)
G56540 NA non-coding upstream 161477 10290459 ~ 10292559 (+)
G56509 NA non-coding upstream 164524 10288850 ~ 10289512 (+)
G56507 NA non-coding upstream 169512 10283073 ~ 10284524 (+)
G56579 NA non-coding downstream 38160 10512413 ~ 10512640 (+)
G56567 NA non-coding downstream 44563 10518816 ~ 10533725 (+)
G56548 NA non-coding downstream 156845 10631098 ~ 10638452 (+)
G56594 NA non-coding downstream 221473 10695726 ~ 10696013 (+)
G56628 NA non-coding downstream 241357 10715610 ~ 10715888 (+)
CI01000009_09853929_09854476 SAP18 other upstream 597449 9853929 ~ 9856587 (+)
G56100 NA other upstream 1323750 9129300 ~ 9130286 (+)
G53651 NA other upstream 4205644 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4521235 5931718 ~ 5943899 (+)
G53388 NA other upstream 4914982 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1286533 11761606 ~ 11766944 (+)
G57811 NA other downstream 1459689 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 1958305 12432538 ~ 12436017 (+)
G57682 NA other downstream 2351216 12825469 ~ 12892339 (+)
G57691 NA other downstream 2432191 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location