LOC103041332


Basic Information

Item Value
gene id LOC103041332
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34213764 ~ 34216327 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676851.1
GATCAGAGCGGAGCTGAGGGAGCAGagTCATGATGCTGGTAAAATtgctgtgtgtgctgtgctgctTTGCTCTGCAGCCCTGGCAGCTGGAGGCAAAATCTCTTCTAAACGTGATCAAACAGGAAGacgTGGCTCCAGTCAGTATAGACGCTGAGAAGGCTAATGGTTTCCTGTCGGGCTCTAGGGGGCGCCGCAGTGTGGACCCCCGCTGGCATCGCCAGACTCCAGACTTCCAGGCTTATTATCGTTACTACAGCAGCATCGGACACACGGAGGGGCTTTACGAGATCGACCGGATCCGGATGATCTACCAGCAGATGCGTCACCTGGAGCAGGTCCACGGTCCAAACGCCGCGTACTACCAGAGCAAGCTGGGTGTTCCCGTCCTGCCCCCACTGCCCAAATGTGACCCGGCCAAAGACAAGAATTGTAAAAtgcccccccctcccccccctgaGGCACCCGCCCCAATTAAAGGCCACGCCCCCCCAGCCATGTCCCAGGCTGACGTTGTTTACCTGTGCAACGCTAAAGACCCCCTCTGCAAACCGCACATCGTATACATGCCCACAGGGGCCGTTCCTGTGCTGTGCGACCCGCGCTACCACCCCACCTGCAAACTCGAGGGACCACCACCCCCCGCCCCACCCAAGAAGGTAGCCCTGCCTCCTAAGGTAGCCCCGCCTCCAGCACCAATAATGTACAAAGGAATGGAGTATGACTGCGACCCTTACTGGGACCCCGACTGCCTGATTGATAACCCTCCCCGTCTCATCAAAGGCAAGCTGGCCCCTCCCCCTCCacctgaggaagaggaggaggaggtggagtcGACTCCGGCCCCGCCTCCCCCGCCTCTCCCGATTGCTAAGAAACACCCAGTCCCGTACTACGGTTACCCGTACTACCCGTACTACACCCCCAACTACCAGTCAGAGCTGTATGACGCTCACCGCTACGCCTACCCCTCCCCCAACACCGACAAATAAACACCACAAATACACAACACCGACCAATACACAACACCAACCAATATACAACACCGACAAATAAACACCCACAAATACACAACACCGACCAATAAACACCCACAAATACACAACACTGACCAATACACAACACCGACCAATACACAACACCGACAAATAAACACCCAGAGTGAGTAAATCTCTCACACAACAGTGTAAATCAGTgaattaaagtgtaaaataaagaaGTGTTGAATAAAATCTG

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676851.1 True 1233 mRNA 0.55 5 34213764 34216327

Neighbor

gene id symbol gene type direction distance location
crmp1 NA coding downstream 14879 34191147 ~ 34198885 (-)
LOC103038859 NA coding downstream 23370 34185628 ~ 34190394 (-)
cytl1 NA coding downstream 77192 34134586 ~ 34136572 (-)
stx18 stx18 coding downstream 110390 34090634 ~ 34103374 (-)
lyar NA coding downstream 135475 34071903 ~ 34078289 (-)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 3616 34219943 ~ 34228034 (-)
G15516 NA non-coding downstream 18536 34194775 ~ 34195228 (-)
G15513 NA non-coding downstream 35197 34177201 ~ 34178567 (-)
G15512 NA non-coding downstream 38386 34174200 ~ 34175378 (-)
G15510 NA non-coding downstream 45862 34167542 ~ 34167902 (-)
G15509 NA non-coding downstream 55602 34157327 ~ 34158162 (-)
G15523 NA non-coding upstream 17302 34233629 ~ 34234463 (-)
evc2 NA other downstream 41747 34151823 ~ 34172017 (-)
G15497 NA other downstream 77032 34134592 ~ 34136732 (-)
hopx hopx,LOC107552340 other downstream 1392960 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 2053801 32122222 ~ 32159963 (-)
G14839 NA other downstream 3158261 31053764 ~ 31055503 (-)
G15498 NA other upstream 24999 34241326 ~ 34242318 (-)

Expression


Co-expression Network