dcaf7 (dcaf7,LOC105030232,LOC105898766,LOC100702343)


Basic Information

Item Value
gene id dcaf7
gene name dcaf7,LOC105030232,LOC105898766,LOC100702343
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16275677 ~ 16285893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677363.1
AAGACATTTTCGATCAAAACCTCGAGCCGTCGTTTTTCAGCTGTGTGCTCCGCGGAAAGGCCCGGTGAGAGTTGGCggttatttactgatataaacGGTAATCCGCTGTTTTTGTTATGCGGGATATTTAGCGCTGTGTTCGAGATATAGAGAGACGCGGAGGGAGCGGGTCTGGCGGAGCGGAGCGGCGTCGTTTAGCTCGGCTGCTGCAGGAGAGCCGCGGGAGTGTTATGACATTCCCTTTGTCTGAATTAACGGGGCGTTTGGTCGTGTTTTGGTGGTAAACCCGTCGTGTCGCGCGTGTTCTGGGTTTATTTGGTCGTTAGGTTAGTCCGCTTTACTCGGTCGAGGTTCGCGTGGAGCGGAATAATCAGCCATGTCTCTGCACGGCAAGAGGAAAGAGATCTATAAATACGAGGCGCCATGGACCGTGTACGCGATGAACTGGAGCGTCAGACCCGACAAGCGCTTTCGGCTCGCGCTCGGCAGCTTCGTGGAGGAATACAACAACAAGGTGCAGCTGGTTGGCCTCGATGAGGAGAGCTCTGAGTTTGTGTGCAGGAACACGTTTGATCACCCCTATCCCACCACCAAGATCATGTGGATTCCTGACACTAAGGGGGTCTACCCAGACCTGCTGGCCACGAGTGGAGATTACCTGAGGATCTGGAGGGTGAATGACACAGAGACTCGTCTCGAATGCCTTctgaacaacaacaaaaattcAGACTTCTGCGCTCCTCTGACTTCTTTTGACTGGAATGAGGTCGACCCCAATCTTCTAGGCACTTCCAGTATCGACACCACCTGTACCATATGGGGTCTGGAGACAGGGCAGGTTCTGGGGAGGGTAAACCTGGTATCTGGTCATGTCAAGACCCAGCTCATCGCCCACGACAAAGAGGTGTACGACATTGCATTCAGTCGTGCGGGTGGAGGGCGAGACATGTTTGCGTCTGTTGGAGCAGACGGTTCAGTGCGTATGTTTGACCTCCGTCACCTGGagcacagcaccatcatctACGAAGACCCTCAACACCACCCGCTGCTCCGCCTCTGCTGGAACAAGCAGGACCCCAACTACCTGGCCACCATGGCCATGGATGGCATGGAGGTGGTCATTCTTGACGTACGTGTGCCCTGCACGCCGGTGGCTCGACTGAATAATCACCGTGCCTGTGTGAATGGCATCGCATGGGCCCCACACTCCTCTTGCCACATTTGTACTGCAGTAGCGGACGATCACCAGGCACTCATCTGGGACATTCAGCAGATGCCGCGGGCCATCGAGGACCCCATCCTGGCGTACACGGCTGAGGGAGAAATCAACAACGTGCAGTGGGCGTCCACTCAGCCCGACTGGATCGCCATCTGCTATAACAACTGCTTGGAAATCCTGCGGGTTTAACAGCGAAGCTGATACTGGCCCTGATTCTTCACCAAACGAGAGCAGGGCTAGTGCCAGCgagagagatgaagaggaggaggaggagggagaagATAAtagaggagaaggagaagaagaagaagaagaagaagaagaaaatgatgAAGAGGGTGGAGGAGATGGggaaggagaagaagaggaaggaggGAGTGGCTGGTTTCTGTGCTGTTGTAGGGGTCTAGAGGTTGCTGGTGGGTTTGGGTAGGGTGAGTGAGTGATtagtgtgtatgcgtgtgtgtg
>XM_022677369.1
AAGACATTTTCGATCAAAACCTCGAGCCGTCGTTTTTCAGCTGTGTGCTCCGCGGAAAGGCCCGGTGAGAGTTGGCggttatttactgatataaacGGTAATCCGCTGTTTTTGTTATGCGGGATATTTAGCGCTGTGTTCGAGATATAGAGAGACGCGGAGGGAGCGGGTCTGGCGGAGCGGAGCGGCGTCGTTTAGCTCGGCTGCTGCAGGAGAGCCGCGGGAGTGTTATGACATTCCCTTTGTCTGAATTAACGGGGCGTTTGGTCGTGTTTTGGTGGTAAACCCGTCGTGTCGCGCGTGTTCTGGGTTTATTTGGTCGTTAGGTTAGTCCGCTTTACTCGGTCGAGGTTCGCGTGGAGCGGAATAATCAGCCATGTCTCTGCACGGCAAGAGGAAAGAGATCTATAAATACGAGGCGCCATGGACCGTGTACGCGATGAACTGGAGCGTCAGACCCGACAAGCGCTTTCGGCTCGCGCTCGGCAGCTTCGTGGAGGAATACAACAACAAGGTGCAGCTGGTTGGCCTCGATGAGGAGAGCTCTGAGTTTGTGTGCAGGAACACGTTTGATCACCCCTATCCCACCACCAAGATCATGTGGATTCCTGACACTAAGGGGGTCTACCCAGACCTGCTGGCCACGAGTGGAGATTACCTGAGGATCTGGAGGGTGAATGACACAGAGACTCGTCTCGAATGCCTTctgaacaacaacaaaaattcAGACTTCTGCGCTCCTCTGACTTCTTTTGACTGGAATGAGGTCGACCCCAATCTTCTAGGCACTTCCAGTATCGACACCACCTGTACCATATGGGGTCTGGAGACAGGGCAGGTTCTGGGGAGGGTAAACCTGGTATCTGGTCATGTCAAGACCCAGCTCATCGCCCACGACAAAGAGGTGTACGACATTGCATTCAGTCGTGCGGGTGGAGGGCGAGACATGTTTGCGTCTGTTGGAGCAGACGGTTCAGTGCGTATGTTTGACCTCCGTCACCTGGagcacagcaccatcatctACGAAGACCCTCAACACCACCCGCTGCTCCGCCTCTGCTGGAACAAGCAGGACCCCAACTACCTGGCCACCATGGCCATGGATGGCATGGAGGTGGTCATTCTTGACGTACGTGTGCCCTGCACGCCGGTGGCTCGACTGAATAATCACCGTGCCTGTGTGAATGGCATCGCATGGGCCCCACACTCCTCTTGCCACATTTGTACTGCAGCGGACGATCACCAGGCACTCATCTGGGACATTCAGCAGATGCCGCGGGCCATCGAGGACCCCATCCTGGCGTACACGGCTGAGGGAGAAATCAACAACGTGCAGTGGGCGTCCACTCAGCCCGACTGGATCGCCATCTGCTATAACAACTGCTTGGAAATCCTGCGGGTTTAACAGCGAAGCTGATACTGGCCCTGATTCTTCACCAAACGAGAGCAGGGCTAGTGCCAGCgagagagatgaagaggaggaggaggagggagaagATAAtagaggagaaggagaagaagaagaagaagaagaagaagaaaatgatgAAGAGGGTGGAGGAGATGGggaaggagaagaagaggaaggaggGAGTGGCTGGTTTCTGTGCTGTTGTAGGGGTCTAGAGGTTGCTGGTGGGTTTGGGTAGGGTGAGTGAGTGATtagtgtgtatgcgtgtgtgtg

Function

symbol description
dcaf7 Acts upstream of or within cartilage development and embryonic viscerocranium morphogenesis. Located in nucleus. Is expressed in forebrain; head; hindbrain; and somite. Orthologous to human DCAF7 (DDB1 and CUL4 associated factor 7).

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 7

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677363.1 True 1687 mRNA 0.54 7 16275677 16285893
XM_022677369.1 False 1684 mRNA 0.54 7 16275677 16285893

Neighbor

gene id symbol gene type direction distance location
snrnp70 snrnp70,LOC106583923 coding downstream 311201 15952844 ~ 15964476 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding downstream 333133 15936522 ~ 15942544 (-)
LOC103031937 NA coding downstream 346984 15910391 ~ 15928693 (-)
aldh16a1 aldh16a1 coding downstream 536864 15722985 ~ 15738813 (-)
LOC103038450 LOC108427385,LOC100528069,LOC108427383,LOC108427382 coding downstream 562237 15711815 ~ 15713440 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding upstream 120058 16405951 ~ 16408493 (-)
ccdc43 ccdc43 coding upstream 142211 16428104 ~ 16437125 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding upstream 407529 16693422 ~ 16763105 (-)
LOC111194193 NA coding upstream 780503 17066396 ~ 17068055 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding upstream 951481 17237374 ~ 17512950 (-)
G11065 NA non-coding downstream 3528 16270600 ~ 16272149 (-)
G11036 NA non-coding downstream 50989 16169805 ~ 16224688 (-)
G11043 NA non-coding downstream 130377 16145041 ~ 16145300 (-)
G11017 NA non-coding downstream 188944 16085618 ~ 16086733 (-)
G11018 NA non-coding downstream 190420 16084156 ~ 16085257 (-)
G11069 NA non-coding upstream 1234 16287127 ~ 16290485 (-)
G11070 NA non-coding upstream 5067 16290960 ~ 16304539 (-)
G11071 NA non-coding upstream 21195 16307088 ~ 16312001 (-)
G11084 NA non-coding upstream 81321 16367214 ~ 16370193 (-)
G11077 NA non-coding upstream 132266 16418159 ~ 16420126 (-)
strada strada,LOC107693497,LOC107658471 other downstream 270958 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 373244 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 988942 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 997240 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 1294108 14960832 ~ 14981569 (-)
LOC103036671 LOC108427400 other upstream 35685 16321578 ~ 16353834 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 2822820 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 2955863 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 3500088 19785981 ~ 19802323 (-)
G11917 NA other upstream 3712547 19998440 ~ 20082442 (-)

Expression


Co-expression Network