ccdc43 (ccdc43)


Basic Information

Item Value
gene id ccdc43
gene name ccdc43
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16428104 ~ 16437125 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677441.1
GACCGCgctgctgtgttttttcttcaggCGCTCTGGGCGGCCGGCCGACTGTCGCTGTGAGGACCCCAGAGAGGCAGCATGGCGGCCCGGGCGGAGTTCGGCTCGTGGTTGGATTCTCGGCTGGACGCGCTGCAGGTGGACCGGGATGTTTACGGGACCTACATCTGCAgcctgctggaggaggaggagagcgaGGCCGAGCGCCTGGAGGTTCTGAGAGCCACCCTGTCCGCCGTGCTGGAGGAAGACACAATCGAAGACGTCTGTCAGCAGATATTAAACCAGTGGGCCGACTGCTCAGCTCGAGCCAAAGCTGCCAGCAGCCAAGCTGAAGATGAGGTTCAGGCCATCGCCAGTTTGATAGAGAAGCAGGCCCAGATTGTGGTGAAGCAGAAAGAAGTACCTGAGCTGgacaagaaaaggaaagaggCATTACTCGCTCAATACGCCAACGTCACAGACGAGGAAGATGAaggtgaagaagaggaggagttaGGAGCTGTGGGAATCCCCAGTGAGAAATCTCTCTTCAAGAACACCAACGTGGAGGACGTCCTGAACCGCCGCCGGCAGCAGCGGGAGCAGGCAAAGGAGGATTCgcataaaaagaaagagcagGACAAGATGCAGAGGGAGAAAGACAAGCTGTCTAAACAGGAGCGcaaggaaaaagagaagaaacgCACACAGAAGGGAGAGCGCAAGAGATAGGGGGCACCATTGGAATATGTTTTGGACTTGGTTACGTTCATCACTGAGAATGCACGGAAACAGTGGCACCTGTACGGACTGTTCTGGTGTAAGGTGTTGGCacccataatttttttttttcttttttttttttttttttaaatataaacatgaGTGACAAGATGTTGCTAATGAATCCAGGGCCTGGCTGACTAAACCATAACACACATACATCACCTCACCCCATTTCACACTTGTGTTTCCCTGCCCTAATAAAGGCTTAGATTGAGAAAATCCAGGGACTGGTTTAGGAAAGCATTctgaagaaataaacagaaaaacagactgGATCACAAGACAAACACCTATGTAGTATGTATTTACTGCTGAACTCAGTGTTTGAGTTGCAAACAAGTAACAGTGTCTTTACATGCACTTTACAATCTGATATCTGATACTGTCAAAAATCGGAGTTTGTCAGCAATCTATTCATTGTGTTTACATGAACTTGGGTAATTAGATAATGagaaaataatcagatttttgctttgcaGCCAGCCAATGAGATgtgtaaattatgtaaaatcCAAAGAGCACACcatgatcttttttttaacacatcaaGTCTAAATTTGTGCATAAATCAGTAAGAAAATTAAGTCTATTAATTTCCTGTTTCAGTTTTACTCTAAAAGAGTTTTGTTGCCATCCCCCAGGTGCTGTGTTAAATGCTGTTTGATCATTTTTTGCTACCAGGCTCCGTTTTCGCACATGCACCGactaaaaaaaagatacaaggATACTCTTTATCAGATTTCTTAAGTACTCTTAAGTAGATTTCTACAATACCAGTGTATCCTGTTTATATGACTACTTAAATGATCAGATAACGGCAGTAATCCGATTTtcaagtgcatgtaaacacactcactgttATGTTGCTGGGGTCTTCAGGACTAAAGCTGACGAACATTAGCAACTGCAACTAAACAAGGAATACGTAATGagtttttaaatcactgatCAGGTGAATAACTTTTAGCACATGAACTTTGTGCCACTTGCTTTATCTTATCTGGCATAGAGACCACTTTACACCTCACTGAATCATATGATTAGTATCTGGATTAGATTTGGTATCATGTTAAGATTTTAATCAGATGCATATACACAATAGTTGAGTTGgaaatctgaaatctgattaGTGTGTGGGCATATTGCACAGCAATTATTAATGGTGTTTTAGTTCTACTGGGAGAAGTTATGTTTGTCAGAAGCATTTACATTTGCAATAATGCGGCTCAAATGCATCTCCTCATAGAAACACATTTGAAAGTGGATTAAGCAATCAATTTTAAATGCCTCTTGggtgcacagtttttttttttctcgtccatataatcctgatactcaaaACACATTAAAGCAAAAAGGGCCCTAACATTTCAAACAAGA

Function

symbol description
ccdc43 Orthologous to human CCDC43 (coiled-coil domain containing 43).

NR:

description
PREDICTED: coiled-coil domain-containing protein 43-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677441.1 True 2145 mRNA 0.43 5 16428104 16437125

Neighbor

gene id symbol gene type direction distance location
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding downstream 19611 16405951 ~ 16408493 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 142211 16275677 ~ 16285893 (-)
snrnp70 snrnp70,LOC106583923 coding downstream 463628 15952844 ~ 15964476 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding downstream 485560 15936522 ~ 15942544 (-)
LOC103031937 NA coding downstream 499411 15910391 ~ 15928693 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding upstream 256297 16693422 ~ 16763105 (-)
LOC111194193 NA coding upstream 629271 17066396 ~ 17068055 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding upstream 800249 17237374 ~ 17512950 (-)
LOC111194274 NA coding upstream 1657914 18095039 ~ 18096516 (-)
LOC111194212 NA coding upstream 1788979 18226104 ~ 18229347 (-)
G11077 NA non-coding downstream 7978 16418159 ~ 16420126 (-)
G11084 NA non-coding downstream 57911 16367214 ~ 16370193 (-)
G11071 NA non-coding downstream 116103 16307088 ~ 16312001 (-)
G11070 NA non-coding downstream 123565 16290960 ~ 16304539 (-)
G11069 NA non-coding downstream 137619 16287127 ~ 16290485 (-)
G11094 NA non-coding upstream 46444 16483569 ~ 16483886 (-)
G11100 NA non-coding upstream 52900 16490025 ~ 16490226 (-)
G11102 NA non-coding upstream 53643 16490768 ~ 16491104 (-)
G11108 NA non-coding upstream 123999 16561124 ~ 16561363 (-)
G11116 NA non-coding upstream 167913 16605038 ~ 16618039 (-)
LOC103036671 LOC108427400 other downstream 74270 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 423385 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 525671 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 1141369 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 1149667 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 2671588 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 2804631 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 3348856 19785981 ~ 19802323 (-)
G11917 NA other upstream 3561315 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 4537957 20975082 ~ 20975154 (-)

Expression


Co-expression Network