LOC111194212


Basic Information

Item Value
gene id LOC111194212
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18226104 ~ 18229347 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677680.1
TGGGTTTATTTTCTAAATCTCTAAGCATCACTGCTTCATTGCCCATCATAGCAAGTTCATAGCCAACATAATTCTCAGTCATTAAGGTCAATATTACCACAGTGAATCTTCCTTACATCCCCTCATGCACACATGTTTAAGAACCTCTCATTAACAGATGCTCATCTTTGTCCACAGGGCAGGTTGCAGTATCTGGTCAAGTGGAGAGGCTGGTCAGCCAAGTATAACACATGGGAACCAGAGGAAAACATCCTAGACCCACATCTGCTGGTCACCTTCCAAAACAGagAGTATCAGGAGCAGATGATGGGTTTTCGCAAAAGGGGACGAAAACCAAAATATCATCTCAAACAGGTCCCCTCATTTGCTCGAAGACCTGGAATCCTCTCCAGTCTGCAGGAGGCGCTGTCCAATGGGAAAAAGAAGCACTGCTACCACCTGAAAAGCAGGAAACACCACCACAACCAGGTTGATGCCAAAATGTACCCAAAGGTAAAGGAGGAACCTAAAGGAAGCTGGAACCTTCCTCAGGTCCTGCATCAGCAGTGGATTCAGAATAAGGTTTCAGAGTGTTTGAACAATGTGAGGGACATTACCAAAGAACTTGAGAAGCTTCCAGCTTGTGTTATTGGTGGTGAGACATCTGAGCTAGGCTCTAACATCATTCCTAGAGAAGCTCCTGCAAGTGGAATGAGCAGCAAGCTGAAGATTGTGAAGAACAAGAATATAAATGGACGGATTGTGATTGTCATGGGCAAGTATGCGGAAGGGGGCACCCAGACTGGCAATAGTGTGGAAAACGAGTCAGATATAACAGGAAAGAATAGACACAGTGCTGAGAACGACTGCAAAGAGGAAAACGAAGATGAGATCGAGCTTTCTCCATGTAGATTTACTGTGGCCAATATGGAGAACAACCTCAAGGAGGAAGGTGTGACCAAGTCTATCCCGTTTCTAAATCCTTCAGAAAAGAGTATCCATCTCTGTTTAGATCCAAGAAGTGGACAAGGAGCTCAAAAGAGGCGTTTCTCAGAACCAGAGATTGAGCAGGACAGTGAGGTCAAAAGGTTCTTGAGCTCTGAGAATACAGGTGTACCAATTTCAGGGTTCAGTCAATGTCAAATCAAAAACTCCCACATTGACGGCCGCCAGCACTCAAACAAACaatgctttgaattatttgGCTGCCAGGATGAGCCAATAGATCTGAGCTATTCAAGAAAACTACGCAGTCCGATCCCAGACAAATCTCAAATTAACAGAAACTCTAAAGCATCtgaaaaacagatagagtctctgaaagaacagacagaaaaagaaccAGAATCTACATTGATTCAAAGCTTCACGCCTTTTCTTGGTGATGTAATAATAACAGATGTTACAACAAACTGCCTCACTGTGACGTTTAAGGAGTATGTTACTGTCTGgaaataatgacaaaaaaaactgcagagatCATAACAActacaaatgaaaaatgttttacatcatTGCAGCTAATCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677680.1 True 1511 mRNA 0.43 4 18226104 18229347

Neighbor

gene id symbol gene type direction distance location
LOC111194274 NA coding downstream 129588 18095039 ~ 18096516 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding downstream 713154 17237374 ~ 17512950 (-)
LOC111194193 NA coding downstream 1158049 17066396 ~ 17068055 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding downstream 1462999 16693422 ~ 16763105 (-)
ccdc43 ccdc43 coding downstream 1788979 16428104 ~ 16437125 (-)
mos mos coding upstream 7965 18237312 ~ 18238566 (-)
mrpl28 mrpl28,LOC107659942 coding upstream 37046 18266393 ~ 18274248 (-)
cul5 cul5,cul5a,LOC107714978,LOC107582587,LOC107554266 coding upstream 49811 18279158 ~ 18296062 (-)
itgae NA coding upstream 68209 18297556 ~ 18322614 (-)
tubd1 tubd1,LOC107581164 coding upstream 209793 18439140 ~ 18445800 (-)
G11365 NA non-coding downstream 88917 18136907 ~ 18137187 (-)
G11362 NA non-coding downstream 103007 18122824 ~ 18123097 (-)
G11299 NA non-coding downstream 410233 17815640 ~ 17815871 (-)
G11297 NA non-coding downstream 451425 17774218 ~ 17774679 (-)
G11285 NA non-coding downstream 535017 17687643 ~ 17691087 (-)
G11449 NA non-coding upstream 16896 18246243 ~ 18247171 (-)
G11466 dhx40 non-coding upstream 121237 18350584 ~ 18351976 (-)
G11473 NA non-coding upstream 138506 18367853 ~ 18369340 (-)
G11481 NA non-coding upstream 157708 18387055 ~ 18404593 (-)
G11482 vmp1,LOC107582631,LOC107701424,LOC107554262 non-coding upstream 164887 18394234 ~ 18412893 (-)
LOC103036671 LOC108427400 other downstream 1872270 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 2221385 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 2323671 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 2939369 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 2947667 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 879366 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 1012409 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 1556634 19785981 ~ 19802323 (-)
G11917 NA other upstream 1769093 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 2745735 20975082 ~ 20975154 (-)

Expression


Co-expression Network