LOC111194234


Basic Information

Item Value
gene id LOC111194234
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22309352 ~ 22318452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677708.1
AGTAGTTGAGAAGCTCTTGAGGAACAGAAGTAGCCATGCTGTATCTGACTCACGTAGCTCTGCTGCTCTTGTTCGGGATTAAAGGTGCTGCCAGCAGGAAAACAGCAGAAACACCAGAAGTTATTAAAGCAAGACTTGGAGAAGCTCTCACTCTAGACTGCAGCTACAACTGCTCCTCAGGGTTTGTTCGCGGTTATTGGAAATGGGAGGAAGAAGAAGCGCCGGCGTGTGAAAGCTGTCACTGGGAGAATAAACCCAATAAAAATGAAGACATGTGCACTCTGAGCTTATACACTCATAACCTGACCCTTCAGCAGACACTATACAACTACTCCTGCATCACTGAGCAGAGCGATGACCAGGACCTCCCTCTGAAAACAGAGCGGCTGATATCTCTGCAAATCCAAGaggTATCTATGAAGGTGGTGATTCATACGAATGCAGAAAACAACCCAGTTGAAGTGGTGTCATCACACTCCATTCAAGTGCCGGTGGGAGCCTACCTAGAACTGAAATGTCTTTCCACTGATAAACACTGTGAAGGCATGTGGATCAAGGATCAGGATCAACCAGACATTCGTCCTCCAGCAAACTCTGACCCACTACTCTGGGAGAAGATAACAGAGGAGGATGGAGGAAGCTACACATGCCATACAAAGCAGCTCTGTACCAGTCAGAGAATCACTGTCGAAATAGGAATAATTAAAGAcgAGGATTTTCGGCTGGATCAGGGCTTTAGCAGCTGTTGCAGTGTCTGCAGTCATGATGCTGATGATCATGCTGATCTACCTGTGTTACAAGAGGATGTGCAGTTTATCAGATCCAGAGGAATCATCTGACGCAATTTATGAGAACACAAGAACCAAAAATGCGATGACCGTCCTCAAACCTATTATACAAgAGTGCGAGACGGATCATGAGGTTCCCTACGCCGATATCGTGATTTCTGTGAGAGGGTCCAGCATTCCAGAACTGACGGGAACCCACGGTACTCAGGCCCCCAGGGACCACAGACTGagatggagagaggaggCCGCAGGAGGATCTCGTCTACAGGCCTGCCGCTCCGCTGACAGACTGCACGTTCACCCCAGGGAAGTCAGCAGGAAATTAAGCACAACTTCGGAGTACGCCATCATTACCTATTCAACAGAAGCACTTAGCTAGTGTTCAGatcagctgttttttatttgtatttttatttggttgtgTCCACTTTTTTCTGCCTCGCCCACTTTCAAAAGTGTGTTTCTTTCCCTCTTTGTATTTGAATATCTGGTCAGTTCATATTAAATGGTTTTAGGCTGTA

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677708.1 True 1309 mRNA 0.47 7 22309352 22318452

Neighbor

gene id symbol gene type direction distance location
ankk1 NA coding upstream 353508 21938389 ~ 21955844 (+)
LOC111194280 NA coding upstream 378048 21919218 ~ 21931304 (+)
ttc12 NA coding upstream 403957 21844765 ~ 21905395 (+)
LOC111194279 NA coding upstream 481970 21764958 ~ 21827382 (+)
LOC103031614 ppp2r1b,LOC104918016 coding upstream 712000 21574950 ~ 21597352 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding downstream 33917 22352369 ~ 22391001 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding downstream 87927 22406379 ~ 22435434 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 202790 22521242 ~ 22529283 (+)
LOC103038567 LOC108436528 coding downstream 215227 22533679 ~ 22614509 (+)
LOC103034742 grik4,LOC108439963,LOC108277597 coding downstream 829559 23148011 ~ 23500229 (+)
G12523 NA non-coding upstream 82202 22164761 ~ 22227150 (+)
G12514 NA non-coding upstream 175710 22130603 ~ 22133642 (+)
G12513 NA non-coding upstream 178352 22129179 ~ 22131000 (+)
G12496 NA non-coding upstream 226681 22030440 ~ 22082671 (+)
G12497 NA non-coding upstream 242998 22039853 ~ 22066354 (+)
G12562 NA non-coding downstream 157752 22476204 ~ 22519541 (+)
G12581 NA non-coding downstream 193078 22511530 ~ 22512347 (+)
G12585 NA non-coding downstream 254112 22572564 ~ 22615440 (+)
G12588 NA non-coding downstream 297130 22615582 ~ 22618917 (+)
G12592 NA non-coding downstream 319164 22637616 ~ 22637893 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 845703 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 1319288 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 1333075 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2864521 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 5166004 17139425 ~ 17143348 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 155200 22473652 ~ 22517780 (+)
G13067 NA other downstream 1535546 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2382390 24700842 ~ 24722676 (+)
G13237 NA other downstream 2537481 24855933 ~ 24857022 (+)
G13445 spcs2,LOC107677086 other downstream 2734061 25052513 ~ 25056103 (+)

Expression


Co-expression Network