LOC111194262


Basic Information

Item Value
gene id LOC111194262
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 2495303 ~ 2495956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677798.1
GAAGAGGCGCCCAAGGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCACCCAAGGAAATATTTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCACCCAAGGAAATATTTGAAGAGGCTCCTAAGGAAACACCTGAAGAGGCGCCTAAGGAAACACCTGAAGAGGCGCCTTATGAAACACCTGAAGACACAGACAAGCCTGTATCTTCGTCTGTGCTGAAGGGCGCCCCCTCTGCTCTGGAGCTGCCACAAGGAAACGTCTCTGCAGAAGCAGAGGAGGAACTTCCTGAGGAGACATCAAGACCAGAGAATCATATAGTAGATCAGACCTCACCTTCAGCTCCAGTGGAACTGACCATGACTGTAGAGCAGGAGACCACCAACGAGGAGACAGTCTACAGGAATGATGTGATGGCGTCAGTGAAGAATGCGCTGGATGAACTCAACGTTTTAAAGGAGAATGACATCAGATCTGCTCCAGACAGCAACAGATTTTCCTTTCCGGCTTTAATCGGCGCCGCTGCCATTCCAAGCGCCATTATCTGTTCTGGGCTCCTGCTTTACCATGGTATAAACTGGTTACGCACCCTGGTCTAGACAGCTCTCCAGGACTGTACCATGATttaaattgtccatgcaaatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677798.1 True 654 mRNA 0.49 1 2495303 2495956

Neighbor

gene id symbol gene type direction distance location
LOC111194261 NA coding upstream 221 2492574 ~ 2495082 (+)
LOC103036218 NA coding upstream 251789 2230650 ~ 2243514 (+)
LOC103039045 znf207,LOC108444040,LOC108278632 coding upstream 272035 2213921 ~ 2223268 (+)
LOC103039361 slc25a23b,LOC108444036,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC108274688 coding upstream 290724 2160815 ~ 2204579 (+)
LOC103036529 LOC108444037 coding upstream 334445 2153332 ~ 2160858 (+)
LOC111193070 NA coding downstream 391665 2887621 ~ 2902359 (+)
LOC111193073 LOC108412732 coding downstream 407119 2903075 ~ 2918837 (+)
LOC103026461 LOC103026461 coding downstream 478057 2974013 ~ 2975368 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding downstream 569319 3065275 ~ 3101997 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding downstream 610235 3106191 ~ 3136201 (+)
G7300 NA non-coding upstream 4990 2490092 ~ 2490313 (+)
G7298 NA non-coding upstream 32937 2462092 ~ 2462366 (+)
G7294 NA non-coding upstream 80455 2414624 ~ 2414848 (+)
G7291 NA non-coding upstream 94996 2393628 ~ 2400307 (+)
G7292 NA non-coding upstream 96662 2390216 ~ 2398641 (+)
G7306 NA non-coding downstream 16174 2512130 ~ 2512338 (+)
G7307 NA non-coding downstream 17096 2513052 ~ 2513286 (+)
G7329 NA non-coding downstream 197334 2693290 ~ 2693606 (+)
G7379 NA non-coding downstream 241917 2737873 ~ 2738225 (+)
G7383 NA non-coding downstream 247744 2743700 ~ 2743990 (+)
carm1 carm1 other upstream 414762 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 447740 2039387 ~ 2047563 (+)
G7109 NA other upstream 1149872 1340206 ~ 1345431 (+)
G6995 NA other upstream 1792983 700764 ~ 702320 (+)
G6901 LOC108436678 other upstream 2057915 413131 ~ 437388 (+)
G7296 sept9,LOC108411966 other downstream 34660 2530616 ~ 2558344 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other downstream 329172 2825128 ~ 2842214 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 953265 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 1428329 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 2256840 4752796 ~ 4802501 (+)

Expression


Co-expression Network