CI01000009_10644080_10691030 (CPS1)


Basic Information

Item Value
gene id CI01000009_10644080_10691030
gene name CPS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10644080 ~ 10692050 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_10644080_10691030.mRNA
CGGCAGCGGTTGAACTGAGCGCGGTGTGTTCACCGGTGCATGGAAATATTTTAAACCCTCTTCAAGCTGATATTCACATATACTTTGAAAATAGCGCACATTGTAAAGGAGAAAACAAAACTTCTGGACAGAATATGTCAAAAATCTTAACAGTCTGTGGAGTTGCCAAATCACTGAGGCTGGGATGGCGCAACTGGAGAACATCAACGAGGTTGCTCAGCTTTAAGTCTAACGTCCAGGCTCAGACTGCACACCTGGTGCTTGAAGATGGGACCAAGATGAAGGGATACTCCTTTGGCCATGATCACTCTGCAGCTGGAGAGCTAGTCTTCAACACAGGGCTAGTTGGCTATCCTGAAGCTCTGACAGACCCCAGTTACAGAGGGCAGATTCTGACCCTCACCTACCCCATTGTGGGAAACTATGGTGTTCCCAACACACAGGAGCTGGATGAGCTGGGATTGAAGAAAAATGTGGAGTCTGATCGCATTCAGGTGTCAGGATTGCTGGTTCAGGACTACAGTGCAGAGTACAGTCACTGGAACTCTGTAAAATCACTGGCACAGTGGCTTCAGGAGGAGAAGGTGCCGGCACTTTTTGGGATAGATACCAGGATGCTGACAAAGATTATTAGAGACAAGGGTACTGTTTTGGGGAAGATTGAATTTGATGGTCAGCCAGTGGAGATCACAGACCCTAACCAACGAAATCTAGTGGCTGAGGTCTCAACCAAGGATATTCAAGTGTTTGGGAAAGGTAACCCAATCAAAGTGGTTGCTGTTGACTGTGGAATCAAGCACAACATTATAAGACTACTTGTCAAGCGTGGAGCAGAGGTGCATTTAGTGCCATGGGACCAAGACCTGATGAGTTTGGAGTATGACGGTCTCTTCATTTCCAACGGCCCAGGAGATCCTTCACTGGCAAACACTTTGGTTCAAAATGTTCGCAAGGTGCTGGAAAGTGACTGTCCTCAGCCAGTGTTTGGTATTTGTATGGGGAATCAAATCACAGCTCTGGCAGCTGGTGCACAGTCTTATAAACTACCAATGGGAAACAGAGGCCAAAACCAGCCAGTTGTGAACGTGATGACGGGCCAAGCTTTCATCACAGCTCAGAATCATGGGTATGGCATAGACAGCGAGTCTCTTCCTCCAGGCTGGAGTCCTCTCTTCATCAACGCAAATGATGGAACCAATGAGGGCATTATGCATAATACCAAACCAGTGTTCACAGCGCAGTTTCACCCTGAGGCCAAGGGAGGACCCACAGACACAGAGTTCCTGTTTGATGCTTTCATCTCGCTGATAAGGAAGGGGAAGGAGGGGAGCATCTCATCTGTGATGCCAAAGAAACCTGTTGTTCCTCAGAGAATCCAGGTATCCAAAGTGCTGGTGCTGGGGTCTGGAGGCCTGTCCATTGGTCAGGCTGGAGAATTTGACTACTCAGGATCCCAGGCTGTCAAAGCAATGAAGGAGGAAAACCTGCAAACAGTGCTTATTAACCCCAACATTGCCTCTGTTCAAACTAACGAGGTTGGCACCAAGCAGGCAGACTCTGTGTACTTCCTGCCCGTTACTCCTGAGTTTGTGACGGAGGTGATCAGAGTAGAGCGACCTGACGGCATCCTGCTCTCCATGGGAGGACAGACTGCTCTCAACTGCGGGGTGGAGCTCTTTCAGAGTGGCGTCTTGCAGAAGTATGGAGTGCAGGTTTTGGGCACACCTGTGGAGTCTATCATGGCCACTGAGGACCGGCAGCTCTTTTCAGACAAACTAATGGAGATCAACGAAAAGATTGCTCCCAGTATCGCTGTTAAAACGGTGGCAGATGCCTTGAAGGCAGCAGAGGAGATTGGCTACCCTGTCATGCTGAGATCAGCTTATGCTCTGGGTGGCCTTGGTTCAGGCCTGTGTGCTAATAGAGAGAAGCTAGAGGACACCGCTCGCAAAGCCCTGGCCATGAGCAAGCAGATCCTGGTGGAAAAGTCCCTGCTTGGCTGGAAGGAAGTGGAATATGAGGTAGTGAGAGATGTCGCTGATAACTGTGTCACTGTCTGCAATATGGAGAACTTTGACCCTCTGGGCATCCACACAGGCGACTCCATTGTGGTTGCACCCAGCCAGACTCTGTCCAATGAGGAGTACCATATGCTGAGAGAGACCGCTATTAAGGTGGTGCGTCATCTGGGCATTGTGGGAGAGTGTAATATCCAGTATGCCCTGCATCCGTCCTCTCTGGAGTACTGTATCATTGAGGTGAATGCCCGACTCTCCAGAAGCTCAGCACTGGCGTCCAAAGCTACAGGGTACCCACTAGCATTTGTAGCTGCTAAACTAGCACTGGGCATTCCTCTGCCAGACATAAAGAACGCCGTGTCGGAGCAGACCACGGCCTGTTTTGAGCCCAGTTTGGATTACATTGTCACCAAAATACCTCGCTGGGATCTAGACCGCTTCCAAGGGATGTCTCGGGAGATCGGCAGTGCTATGAAGAGTGTTGGAGAGGTCATGGCAGTTGGCCGAACCTTTGAAGAGAGCATCCAGAAGGCTTTGCGAATGTGCCACCCCTCAGTGGACGGCTTTGTACCACGTCTGCCTCTGAAAAGAGCCTGGGCAGAGCAGCTTGACCTGCAGCGAGAGCTTTCCATGCCTTCAAGTACTCGTATATTCTCCCTTGCCCAGGCCTTGCACAGTGGTGTGACTGTTGATCAGATCCATGACCTCACTGCTATAGACAAATGGTTCCTGCACAAACTGAGGCACATCACTGAGATGGAACAGCACCTGGGTCAGTATAACAGCGCCACAGTGCCGAGAGATCTACTTCTGAAGGCCAAGAGGGATGGTTTCTCTGACCGACAGGTTGGCCAGGCTCTGGACATCTCGGAGGGAGAAGCTCGGGCACTGAGGCTCAACCAGAACATCCGACCTTGGGTCAAACAGATTGATACACTTGCTGCTGAATACCCCGCAGCCACCAACTATTTGTATTGCACTTACCATGGTCAGGAGCATGACTTGGAATTTAAGGATCATGGTATCATGATTGTGGGTTGTGGTCCATATCACATTGGCAGCAGTGTGGAGTTTGACTGGTGTGCTGTGTCAAGCATTCGTGCCCTCCGACAGATGGGCAAGCGTACAGTGGTGGTGAACCATAACCCGGAGACGGTCAGTACGGACTTTGATGAGTGTGACCGTCTGTACTTTGAGGAGTTAACCCTGGAGCGCATCCTAGACATCACACAGCAGGAGGGCTGCACAGGCTGTATAGTATCTGTGGGTGGGCAGATCCCCAATAACCTGGCCATGCCCCTGCACTTGAATGGGGTGAAGATTCTGGGAACCAGTCCTCCTCAGATCGATCGTGCAGAAGAGAGATCTGTATTCTCTTCCATACTGGATGATCTTGGTGTAGGCCAGGCCCCGTGGAGGGCTCTCAGCTCGCTGAGGTGTCAGAGTGCTTTCAAACAGCAAACATTAGAAGTGCTGAAACATGTTGACTGGAATCATGCTCGCTCGTCCGTTAGCTACATCCAGCCTTCTTGCCGTGGGCCATGGAAGCGAAGAGCTAAAGTCGGTGTGATGAAGGGGGAGAGAGAGAGGGCATTCTGCCCCACGGCGCTGCCCACTCACCCTCCGTTGGTTTCCGTCTCGCTGCTGAGGGAAGATGCTGTTTCTTTTGCCAGTAATGTGGGCTACCCATGCCTCCTGCGGCCATCCTACGTTCTGAGTGGCTCAGCCATGAATGTGGTGTACGGTGAAGATGAGATGAAACGTTTCCTTGAGGAAGCCACACAGGTGTCACAGGATCATCCTGTGGTCATCACCAAATTTGTCCGTGGTGCCAGAGAAGTGGAGGTGGATGCAGTGGCCAGAATGGGCAAGGTGCTGGCTCATGCTATCACAGAGCATGTGGAGGACGCAGGAGTGCACTCAGGAGACGCCACACTTATATTGCCCACCCAGACCATCAGCCAGGGAGCTCTGGAGAAGGTGATAGAGTGTAACCTGCGCGCCTCTCGATCCTTCCCTTTCGTCTCTAAAACTATTGGTGTGGACTTCATTGATGTGGCCACCAGGGTCATGGTGGGTGAGCCAGTGGACGAGTCTCATCTGCCGTCCCTAGAAAACCCAATCATTCCAGTCGACTATGTTGGCATTAAGGCTCCAATGTTTTCCTGGCCTCGGTTGAGAGAAGCTGACCCTGTCCTGCGTTGTGAGATGGCCTCCACTGGAGAGGTGGCTTGCTTTGGACCAAACATCTATTCTGCCTTCCTGAAGGCCATGCTCTCTACAGGATTCAAGCTTCCTCAGAAGGGGATTCTCATTGGGATACAATACTCCTGTTTTAATTTCAGTGAGTTGCACTTGACTGAGAATCAGAGTGAAATGTCTTGCCAAATTCGGCTAGTGCGACACAACCTCGTTCTGCAGGCACAAGATGTATTAAACAGGCTTTATAAAGAAATTCCTAAATGCTTAAAACACAAAGCACTTAATAGATATGATCTGATCTGTATCCTCAAATGGTTTTCTATAGGCAAAATGTTATTGTGGTTCTTTTTCCATGGGTGTAACTATGTTTACGATTCATGCCCACTCTCAGCATGGAAATCAAATATCTTGTCAGGGTCATTGACGATGCTCAGACAGCATTGTGTTCTAATGTCTCGGCTTCATGAGGAGGGCTTCAAGCTCTACGCCACAGAGGGTACGTCAGCTTGGCTTAATGCTAATGATGTTCCAACGATCCCCGTTGCTTGGCCGAGACATGAAACCAATAACACACCCTTACCAAGCATCAGCAGACTTATCAGTGAAGGACACATTGACCTAGTGGTCAACTTACCGAATAACAACACCAAGTTTCTCAAGGACAACTTCCAGATCCGGAGAATGGCGGTGGATTACGGAGTACCTCTTATCACAAACTTCCAGGTAGTAAAGCTGTTTGCAGAAGCCATTAGGTATTCCAGTGACTTGGACGCCACCAGCCTGTTCCACTACCGCCAACGTGAACCCAGACTGTCGGAGAGCTCTGCTGCATGGTTAACTTGTAACCTCTAAAACAGGAAACTCAAACTCAAAAGTTAGCTGAGGAGGTGTTATCCATCCACCGGGGGGCCAGTCGAACAGTTACAAGTATTTTAACAAACATAAATCTAAGTAGACAGGACTCAACATTAAGGCTTTTTTCTGTTGGCCCAGTCAGGACAGTAACTCAGGTTTCACTGGCCACATTTCTTCAGTAACTTTTTTTAAAAATTTCTATAATTTTATTTAATTTATTATAATTATACTACCGGTCTACTGGTTTTTAATGTTTGTGAAAGATTTATTTGATCAAAAATTCAGTGAAAACAGTAATGTGTTTTAGTATTATTGATTTTAAAATGTAATTTATTCCTGTGCTGGCAAAGCTGAATTATTTTCAGCTTCCAGTGTTCAGTATCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGACCTTAAACATTTATTATTATTATTATTATTATTATTATTAATGTTGAAAATATTTTTGTGGATTTTTTTGACACTGAAGACTGAAGTAATGCTGCCTGCTATAAATAAGTATATATTTAAATATATTTAATTTGATAACAAAAACAACTATAAATTCATACCAACACACTTTTGCAGGAAAACATTACTGATTGATCCTTATTGTTGAGCCCTGCTACAGTTATTGGCACAATTACAAGTTTTTATCAGTGTTTGTCCACTTCTCTTGAAACGGTCTCCTTCCTTTAAGGTAAAAACTAACAGATCAAGACAAGCTAGCTATCCTTAACCATAACCACACTGCTTATATCCAAAAATCTAGTGGGCTCAATGTGGCATGTGAGTGGGTTGAGACCGACTTGAATCTTTCTGGCTGTTCTTAACAGTCAGCACTGTCTGTTCAATGTACCAAAGAGCGAGAAACTGCTGCTCTCAGCACACAATAGCAGATATGCGTGTGATTACACAAAAAGAAAATCATTTCTATGAATGTGTCCATGTTTGTGTCTGTCTTACGAGAGTGAGAGTGGAGGAAACATCTAGACTTCATTCCTCA

Function

symbol description
cps1 Enables carbamoyl-phosphate synthase (ammonia) activity. Acts upstream of or within ammonium homeostasis and urea cycle. Predicted to be active in cytoplasm. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in carbamoyl phosphate synthetase I deficiency disease; persistent fetal circulation syndrome; and vascular disease. Orthologous to human CPS1 (carbamoyl-phosphate synthase 1).

NR:

description
carbamoyl-phosphate synthetase III

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_10644080_10691030.mRNA True 6092 mRNA 0.47 40 10644080 10692050

Neighbor

gene id symbol gene type direction distance location
CI01000009_10583435_10617169 MAP2 coding upstream 26911 10583435 ~ 10617169 (+)
CI01000009_10555555_10560050 NA coding upstream 83682 10554350 ~ 10560398 (+)
CI01000009_10491868_10508777 NA coding upstream 135071 10491401 ~ 10509009 (+)
CI01000009_10477699_10485965 NA coding upstream 156727 10476658 ~ 10487353 (+)
CI01000009_10454695_10474253 SLC12A8 coding upstream 169827 10454036 ~ 10474253 (+)
CI01000009_11342784_11347580 NA coding downstream 650734 11342784 ~ 11348827 (+)
CI01000009_11434018_11455253 NA coding downstream 741742 11433792 ~ 11455635 (+)
CI01000009_11493236_11526914 VWC2L coding downstream 801186 11493236 ~ 11526914 (+)
CI01000009_11669960_11702667 HIBCH coding downstream 977910 11669960 ~ 11703539 (+)
CI01000009_11711277_11714191 MSTN, GDF-8, MSTNB coding downstream 1019110 11711160 ~ 11714694 (+)
G56548 NA non-coding upstream 5628 10631098 ~ 10638452 (+)
G56567 NA non-coding upstream 110355 10518816 ~ 10533725 (+)
G56579 NA non-coding upstream 131440 10512413 ~ 10512640 (+)
G56564 NA non-coding upstream 290396 10352929 ~ 10353684 (+)
G56393 NA non-coding upstream 339595 10303482 ~ 10304485 (+)
G56594 NA non-coding downstream 3676 10695726 ~ 10696013 (+)
G56628 NA non-coding downstream 23560 10715610 ~ 10715888 (+)
G56633 NA non-coding downstream 29844 10721894 ~ 10722336 (+)
G56695 NA non-coding downstream 138942 10830992 ~ 10860154 (+)
G56725 NA non-coding downstream 194389 10886439 ~ 10926871 (+)
CI01000009_09853929_09854476 SAP18 other upstream 787493 9853929 ~ 9856587 (+)
G56100 NA other upstream 1513794 9129300 ~ 9130286 (+)
G53651 NA other upstream 4395688 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 4711279 5931718 ~ 5943899 (+)
G53388 NA other upstream 5105026 5522242 ~ 5540638 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 1068736 11761606 ~ 11766944 (+)
G57811 NA other downstream 1241892 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 1740508 12432538 ~ 12436017 (+)
G57682 NA other downstream 2133419 12825469 ~ 12892339 (+)
G57691 NA other downstream 2214394 12906444 ~ 12918465 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location