LOC111194280


Basic Information

Item Value
gene id LOC111194280
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21919218 ~ 21931304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677910.1
CTTCACAAAGCACTAAATTGCCCACAATAAAAGGGCACACAAGCATAATTATGGCAAACATTAATACACATGCTTTGGAGGTGCCATTTTCAATCACTGTTAAACCATATGTAACAAGTCCACTTGTTACATCTCCATTGACACCCAAGTTGTTGCAGAGAATTGTGCTTGCAGGAGTTGAAAGCGAAGGTGAACTGACAAGACCTTCAGTAGACACCTCAGCACCATTGGAATTATCTTTCCAGGAGGTAGTTAAGGGAACTTCACAAAGCACTAAATTGCCCTCAACCAAAGGGCACACAAGCATAATGATGGCAAACAGTAATACTGTGAATGAGAATTTCCTAGATTTTAAGTTTTCACATCCTGTGGAGGTGCCCTTTTCAACCACTGGCAAACCAGGAGATGAAAACGAAGGTGAACTGACAAGACATAGCACTTCAGCTAGAGACAGACAAGTGGGAACGACAATCTCCTCAACTTCTCAATCACTTCAAAGTACCACAATAGTGAAAGATGAAGGAATGCCCAAGTTGGTTGTAACCGTCCTCCCATCCAAGTTCACTGAAAGACCTTCACAAAGCACTAAATTGCTTACCACTGAAAGACATGCAAGCCTAATAATGGAAAACACTAATGATGTGGATAAGAAGTTCCCAGATTCTGAGTTTTCACATCCTTCGGAGGTGCCCTTTTCAACAACTGGCAAACCATATGTAACACAATCGTTTGTAACCTTGCCTTCGACACCCAGGTTGTTGCAGAGAATTGTGCTTGCAGGAGTTGAAAGAGAAGGTGAACTGACAAGCCGTAGCACTTCAACTAGAGACAGACAAGTGGGAACGACAATCTCCTCACCTTCTCAATCGCTTCAAAGTACCACAATAGTGAAAGATGAAGGAATGCTCAAGCTTGTAACCGTCCTCCCGTCCAAGTTCACAGACAGACCTTCAGCGTTAATCAAAGTTAAAAATGCCACTCAGCCTGGCAACAGTCTTCTCGGAGCCCATCAGGACATTTCATCCACTGACAGCCGTTCTTTCCGAATGTCTGAACACTGCTGTAAAGTTTCTATTGAAAATAGAACTTCACATCCTGAGGGGAATGAAAACAATGACAGTATAGCCCTGACAGATAACAGAACTGGACATTTTCACACATTAATCGATGAATTGATGCCAGCTGCCTCCAGCACAACTCAATTTCCCGTTGCTCAGAGGGTTATGACTATATCTGCCCAAagtaaaaatgattcagaattaGATTTAGCCGAACAGACTGAAAGGGTCGTAAGCAAATTGACCCAAAGCAAGCCTCTGATTTCTGCCTCCGACAGTATGCATCACTTGGCCACATCAGACCATCCTGATCAATCGCAGAAAATACCCACGACTCCCTCCCAGATCCCTCCAAGGGAGATACAGAACTTATCGCCAATCTTTGAAGGTCACGCTGTCACTTACAGTCCTGTCAGGCAGCGGCTAATTTCATCCCTGACGGGAAGAGCAAAGCCTTTGACTTTCCTATCAAGTCTGACCACCGGCCACACGCCATTTCATCATCCCGGCCGTGTGCTCAAAGGACATCCATCGATTGTGCCGTTAGGACATTCTGCATCTCCACCTGAATTGGTGACTTTTCAGGATTTAGAAAATACACAAGACTCGACAAGTTTCCAGACGGcgaacataaaaataaaaaatacagagccCACCGTGTTTCAGAAACTGCTAACTCCGCACTCTGAGAGGCTAATCAGGACCACAAACACCTGGCCAGTGACAGGAAGAAGCTCTGTAAATTCCTTTTCTGCACAGTTTACCAGCACAGCCGGGTCAGATAAAGGAAGTACAGTGCTTCTAAGTGTGTCTTCATTGAGCACTGCTCTTCTGCACCACTTTTTGGCAGCATCACATGAAAAAAGCAACGTAAAGAAAACAGACAAAGCAATGCAACAAGATTTGGTTTCAAATCGAAGTCAGACAgatgtccttttttttaaaccttcgCAAAGTGAAATCACTGAGCCACTAGGTGTAGATAGTGGAGATTTAGATGATGCAAATCAAATGGTAGTGACTGAGCAACCTCAACCCAAAGAAAACCATGATTTCATGAGTCATAGTGTCTCAACGTCTATGGAAAATATCCAAAGAAAGAAAGCTGCAGGAACGATGGATGTAAAGAGTATAGTTTCTACACAGTCGCCCTTAAAGCAAGAGTCAGAACAGAGTCGTTCAGCAGCTGAAACGAAAGCAGAAAGCTCCACTGGTGCGTTCATACTCGACCAAAATGCTCAGAACGCTTTCAGCATGCAAAACAAGGATCAGACCCCTGCGACAGTTCTAATGGAAAACACTGTGTCATCCTcgcaaagtcaaagtcaaagagGCAAGGATCTACGGAAAACTACCGAGGGCCAAATTGACGCATCTGTTACGCCAGCTGCCGTTGAGAGTTTACGCTCTACTCAACCTTTGGCTTCCCTGGCTGCTGCTGTCGCTGAAACTCCAAAAATGGTTGAGCAGATGATTAATCAGGCAAGTTCACCCGGCTCTACTTTATCATCCATCATAGATGCTGCGTCAGAGGGAaaagattttaataaaaaaagagtccTGCTATCAGTGAATCAAACAACCCAACGTGAACCCAACGCGTCTGCGATTAACCACCTTCAAGCCAAGGCAGCTTCAAGCCAAGCCCCTGGATACACAAGAGCCCCGAAGAGACACCTCATAAACAATGAAGCTATAAACCATCTGACCTTGAACCCCAAACCACCATCATATACTCCTCCTCCAGCACCTGAAGCAACTAGCATTTTGATGAGATCTGATCGTAACACATCCCAGTCCTCCTCATTTACACCTTTATTGCGCTCATCCCCTTCATTCCCTTCAACTCCTTCAAGGATCCTGACAAACTTCTCAACTACATCATCAACAAGTCATTCTcgattatataatatacaacagGATATTATACAGGAAGACTCTCCTCAGACCTCAAGGTCTTCTGTTACTCAAGCAACTTTCTTCAATTTCGATCACAACTATGGAAGCACAGCGAGTTTTGAGTCAACAGCAGCAGAATCCCCTCAAACAGCTTCATTACAAATACTGGAAACGATGGAAACGAGCGAGACAAGCGGAAGACAAAACGAAGGTCGTCTGTCCACCGTTTTCCCATCTGAGACCAGCCTTTCAAAGTCAGCTGAGATGATGTCAGACCTGCCAGTGATGCAGAGGAGGATGAGGATTGCATCGCCCGACTTTCTCAGTGGCCTGGCTCAGATCTCTGATGATATCTGCGGCAGTGGGAACTACACGGCGGAGATGCGTCTGACTCTGGAGAGAGACATCGAGCCGGGAGATCTGATTCCTGCTCTGGGAAACCTGCACGTGGTCATCAACCTGAAAACTAACAACACCCAGGTGAACCTGGAGATAAAGTCCTGCTGTCTGTCTCCCACCGTCACCCTGGACCAGTTCAACACCACCTGCTGCCTGTTCTCCAGGTTACCTATAGATCCTCAAGGCATCCGCCTGCTTCCCAGCGTTCTGTCAAAACGAGCCAGCTTCACCATCAGTCTCTTCCAGATGATTAACTACTCCACCGCCTACCTGCACTGTGATCTGAGCGTGTGCCTGAGGAACAGCTCTGAGTGTGAGCGGTGTCAGCAGAACAGGAAAGCTTGTCTTTCTGATGAAGAGGAGATCATCTTCAGCTATACAGCAAACCGGATTTCCTTCGGTCCAGTTTTAAAAGAAACAGGTGTTTCTCCATTCATAGAAACTACAGGATTGGACGGTGCCGAGGCGGCAGCGGTTGTGGTTTCGGTGTCGGGCTGTTTTCTGGTTTGTGTAGCTCTGCTGCTTCTTTGGACGTTTTACAGACGTCGCTCGGAAAGGTCTGGACACTGCTGGACTCCGTATGGCTGCTCACGCAACGGAGAACACGTCTTACCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677910.1 True 3974 mRNA 0.46 5 21919218 21931304

Neighbor

gene id symbol gene type direction distance location
ttc12 NA coding upstream 13823 21844765 ~ 21905395 (+)
LOC111194279 NA coding upstream 91836 21764958 ~ 21827382 (+)
LOC103031614 ppp2r1b,LOC104918016 coding upstream 321866 21574950 ~ 21597352 (+)
nkapd1 LOC103031305 coding upstream 370131 21544356 ~ 21549087 (+)
LOC103033418 ubash3bb,LOC108436514,LOC108278382,LOC107709118,LOC107586242,LOC107601707,LOC107677523 coding upstream 865363 20994106 ~ 21053855 (+)
ankk1 NA coding downstream 7085 21938389 ~ 21955844 (+)
LOC111194234 NA coding downstream 378048 22309352 ~ 22318452 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding downstream 421065 22352369 ~ 22391001 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding downstream 475075 22406379 ~ 22435434 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 589938 22521242 ~ 22529283 (+)
G12470 NA non-coding upstream 19498 21899470 ~ 21899720 (+)
G12445 NA non-coding upstream 176914 21741857 ~ 21742304 (+)
G12424 NA non-coding upstream 202829 21679840 ~ 21716389 (+)
G12428 NA non-coding upstream 233276 21685357 ~ 21685942 (+)
G12421 NA non-coding upstream 270575 21648352 ~ 21648643 (+)
G12483 NA non-coding downstream 6437 21937741 ~ 21984852 (+)
G12492 NA non-coding downstream 61039 21992343 ~ 21993142 (+)
G12496 NA non-coding downstream 99136 22030440 ~ 22082671 (+)
G12497 NA non-coding downstream 108549 22039853 ~ 22066354 (+)
G12502 NA non-coding downstream 132180 22063484 ~ 22065919 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 455569 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 929154 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 942941 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2474387 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4775870 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 369692 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 542348 22473652 ~ 22517780 (+)
G13067 NA other downstream 1922694 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2769538 24700842 ~ 24722676 (+)
G13237 NA other downstream 2924629 24855933 ~ 24857022 (+)

Expression


Co-expression Network