LOC111194282 (LOC108277600)


Basic Information

Item Value
gene id LOC111194282
gene name LOC108277600
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22258919 ~ 22269228 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677922.1
GGGGCACTGTGGAGGACATCCTCCCCTGCCCCCCAGGCACATACAGTCCCAAAGCAGGGCAGAGCCAAGTAGAGCAGTGTTCACTGTGCTCAGCTGGCATGTACTGTGAGGACTGGGGACTAGTGGAACCAACTGGTCCCTGCCAGTCAGGGTATTTTTGTCTAGCAGGCATAAATTTCAGGAACCCTGATGGGAATTTCAGCACTGGGGTTGGGGGAGCGTGTCCTTTAGGGCATTACTGTCCTGAGGGCACCAGTCTACCTCTACCCTGCCCACTCGGGACCTTTTCCAACAGCCTGTATGTCACAGATCGCTCAGGCTGCAGTTCGTGTCCTGCGGGCCAGTTCTGTGGCTCTGTGGGCCTCAGCAGGCCATCTGGACACTGTTATGAGGGATTCTACTGCCCGAGCGGAGCTACCTCCTCCACTGGCTCAGGCACAGAGGGTGGACTCTGTCCTCAAGCACATCACTGCCCAGCAGGCAGCGCACTGCCACTTCCCTGCCCAGCAGGCACCTACGCCAACCTTACTGGCCAGGTTATGTGTAGCATTTGTCATGCTGGATACTACTGCCCAGAAATCACCAGCAACTATACTCACTATCCATGCCCGCCTGGCTTCTACTGTCCTGAtgGCACAAAGCATGCTACGCAGTTCCCATGCCCAAGAGGCTACTATAACCCTGAGCCCATGACCCAGAGCCTGGACAGCTGCCTACCCTGCCCTCCAGGCCACTACTGTGAGAAGGAAAGACTGACAGCTGTGTCAGGGAAATGCAAAGCTGGCTGGTTTTGTGTCTCAGCTGCCTGGAACCCTCAGCCGTTTGACCTGGATAATTATACCAATGCTAACTGTCTGTGTCCTGCCACTTCTACCGGGGGGAGATGCCAGGCAGGGTACTACTGTCCATCAGGCAGCTCAGAGCCCATACCCTGCCCTCCTGGAGCCTTCTGCAATTCCACTGGCCTGGCCTTGCCAAGTGGTCCCTGTGCCTCTGGTTATTATTGCACTGGAGAAGCTACAGAATCTAAACCGACAGATGGCATCACTGGCAGCATCTGCCCTCAAGGCTCTTACTGTGTTGAGGGCTCCAGAGAGCCAGAGCTGTGCCCAGTGGGCACATTCTCCCTGGCATCAGGCTTAAAGAGCCAGGCTCAGTGTCAGCCGTGCAGAGCCGGGCACTACTGCAGCTCTCGAGGCCTAAGAGCTCCCACTGCTCGCTGCAGTCCGGGTTACTGGTGCCCCCCCGGTCAGACTGATGACCTAGCTCTTCCTTGTCCGGTCGGTCATCACTGTCCCCCAGGAAGTCCTGCCCCAGTTCTCTGCCCCTCTGGGACATACCAGGACAAACAGAAGCAGGCCAACTGCACAATCTGTGAAGAGGGTTTTTACTGTGATGAGAGGTTTGGAGTCTCTAATGCATCTGTCCTGCAGTCCTGTCCAAAGGGTCATTACTGCCCTAAAGGAACAAGTTATGCCACTCAGTTCCCATGCCCCGCTGGTACCTACAACCCATTAGAAGGCATGGATAGCCTAACTGGCTGTCTTCAATGCCCATCAGGACACTTCTGCCCAACAGTAGGCCTTATAGAGCCTGCAGGATTGTGCTTCCCTGGATACTGGTGTCGAGAAGGCTCCCACTCAGCCAGTCCATCTACTGGATCCTCCGGTTCAATTTGTCCAATTGGACACTACTGCCCCAAAGGTATTACTGCATGCGTTTTGCATCAGAATTACGTCTCAAACCATGAGAAGAAAGATGTATAG

Function

NR:

description
PREDICTED: neurogenic locus notch homolog protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677922.1 True 1766 mRNA 0.55 12 22258919 22269228

Neighbor

gene id symbol gene type direction distance location
LOC103037608 LOC108277452 coding downstream 11460 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 67382 22179416 ~ 22191537 (-)
scn3b NA coding downstream 94350 22141770 ~ 22164569 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding downstream 200083 21984434 ~ 22058836 (-)
LOC103032573 NA coding downstream 506024 21747420 ~ 21752895 (-)
LOC103035063 NA coding upstream 1381189 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 1497799 23767027 ~ 23775316 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 1590525 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 1640183 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 1659587 23928815 ~ 23947378 (-)
G12803 NA non-coding downstream 24057 22141079 ~ 22234862 (-)
G12813 NA non-coding downstream 28063 22221199 ~ 22230856 (-)
G12797 NA non-coding downstream 70581 22128005 ~ 22188338 (-)
G12743 NA non-coding downstream 119081 22133357 ~ 22139838 (-)
G12795 NA non-coding downstream 128872 22112579 ~ 22130047 (-)
G12834 LOC108436505,LOC108278373,LOC107586299,LOC107696005,LOC107709103 non-coding upstream 86616 22355844 ~ 22365170 (-)
G12849 NA non-coding upstream 200147 22469375 ~ 22470901 (-)
G12854 NA non-coding upstream 207076 22476304 ~ 22519510 (-)
G12856 NA non-coding upstream 224840 22494068 ~ 22517783 (-)
G12857 oaf,LOC107709135,LOC107586231,LOC107717291,LOC107657251,LOC107601720 non-coding upstream 245296 22514524 ~ 22525772 (-)
G12767 NA other downstream 264168 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1283765 20975082 ~ 20975154 (-)
G11917 NA other downstream 2176477 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2456596 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2985065 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1270029 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1515243 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1634955 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2781732 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 3204506 25473734 ~ 25496958 (-)

Expression


Co-expression Network