LOC111194286 (LOC108277598)


Basic Information

Item Value
gene id LOC111194286
gene name LOC108277598
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22269223 ~ 22283102 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677923.1
atgcaaGACGAGGGCTCAGATGAGTGCTCGCCGTGTCTGCCGGGTCACTACTGTAGTGACGAGACCACCAGTGAGGAGGCCATGTTACGGGTGATGGTCTGCCCACCAGGCTTCCTGTGCTCACAGGGTTTGGATCGGGAGCCCCAGCGTTCAGCCATTCTCTGCCCTATAGGCTTCTACTGCCCTGGGGGCGGAGTTAATCCACACCCCATAGCCTGCCCTAATGGCACTTACAGCCAACAGCCAGGTCTGCGTGACCCTTCAGACTGCACTAAGTGTCCTGTGGGAATGTACTGTTTCTCACACCAGCCCCAGGACAAGCCCATCACTGAACCAACTGGAGGCTGTCCTGATGGATACTACTGTCCTGTGGGAACCGGACATCCTCTTTCCTTCCCGTGTGAATCAGGATTTTTCAGGAATGAGTCTTACGGGCATGATGGAGGGAGTTGTGTGAAATGTCCTGCAAGATATTACTGTGCCAGTGTGGCGACACACACGCCTACAGTGTGCCCAGAGggTTTTTTCTGCCCCGAGGGCAGTTCTGCTGCAGAGCCGTGTGAGGAGGGTACTTACGGCTCTCGCTCAGCTTTGCGTGAGGCGTCAGAGTGCACCCCGTGTGGTGGAGGCAGGTACTGCGCTGGAGTTGGCCAGACAGAACCATCAGGAGACTGCGAGGCAGGATTTTACTGCATGCAGAAAGCCACCAGTGCAACTCCGCTTGATAGTCAGACTGGAGGTCTCTGTCCAGCAGGAAGTTTCTGCCCCCCAGGTTCAGCTCATCCAGAGCCCTGCCCCTCAGGAACTTTCAGCAACAGCTCCGGTCTCAGCCACGCCTCGCAGTGTGTCAGATGTCCTGCAGGCAATTACTGTCTGGGATCAAACAGCACTTCACCCACCGGGCTGTGCTCTGCTGGATATTACTGCACCGGCGGCTCTGCATCTCCTGTTCAGCATCAGGCTGAGGAAGGTCACTACTCTCTAGAGGGAGCTGTGAAGGCTGAACCCTGCCCTTTAGGCACTTTTCAACCTGGAAGAGGCCAAAGCTCATGTATTGAGTGCCAGCCGGGTCGACTGTGCAACACGACGGGTCTGTCCCAGCAGCCTCTCTGCCCATCAGGACATTACTGCCCAGCTGGATCTTTAATCGCACACCCGTGTCCTCCTGGTACCTACACGTCTAATGCAGGAGCAGAGAAGGTGCAGCACTGTGGTCCATGTGATGCTGGGCAGTACTGTCACTCTCCTGGTCTCTCGGCTCCTGAGGGACTCTGTGAGTCTGGATTCTACTGCAGCGGAGGAGCCATCACTGCCACGCCAGTGAACTTCAGGTCTGGAGATGTGTGTCCTGCAGGATATTACTGCCCTGAGGGCACCAGGCACCCCCGTCAGTACCCCTGTCCCCTTGGCACCTGGAGCAACATGATTGGAGCTCAGAACGTCTCTTCCTGCTGGCTCTGCCCACCAGGCTGGTTCTGCAACAACACGGCTCTCACTCAGCCCTCAGGCGTCTGCTCTGCAGGATTTTATTGCACCGCTGGAGCTAAAACCTCTATGCCTGAAGATGGAGTTACAGGAAACAGATGCCCCCCAGGATATTTCTGCCCATCAGGCTGCACTTCACCTAAACACTGCCCTGATGGTACTTACTCCAACACTACAGGTGCGGCAGAGTGCAGCGACTGTCCTCCGGATGGCTCTGTCTGGAAGGCGAGGAGGCCCAGCTGTGTCCAGAGGGCCATTACTGCCTAGGGGGCA

Function

NR:

description
PREDICTED: proprotein convertase subtilisin/kexin type 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677923.1 True 1758 mRNA 0.57 12 22269223 22283102

Neighbor

gene id symbol gene type direction distance location
LOC103037608 LOC108277452 coding downstream 21764 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 77686 22179416 ~ 22191537 (-)
scn3b NA coding downstream 104654 22141770 ~ 22164569 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding downstream 210387 21984434 ~ 22058836 (-)
LOC103032573 NA coding downstream 516328 21747420 ~ 21752895 (-)
LOC103035063 NA coding upstream 1367315 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 1483925 23767027 ~ 23775316 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 1576651 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 1626309 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 1645713 23928815 ~ 23947378 (-)
G12803 NA non-coding downstream 34361 22141079 ~ 22234862 (-)
G12813 NA non-coding downstream 38367 22221199 ~ 22230856 (-)
G12797 NA non-coding downstream 80885 22128005 ~ 22188338 (-)
G12743 NA non-coding downstream 129385 22133357 ~ 22139838 (-)
G12795 NA non-coding downstream 139176 22112579 ~ 22130047 (-)
G12834 LOC108436505,LOC108278373,LOC107586299,LOC107696005,LOC107709103 non-coding upstream 72742 22355844 ~ 22365170 (-)
G12849 NA non-coding upstream 186273 22469375 ~ 22470901 (-)
G12854 NA non-coding upstream 193202 22476304 ~ 22519510 (-)
G12856 NA non-coding upstream 210966 22494068 ~ 22517783 (-)
G12857 oaf,LOC107709135,LOC107586231,LOC107717291,LOC107657251,LOC107601720 non-coding upstream 231422 22514524 ~ 22525772 (-)
G12767 NA other downstream 274472 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1294069 20975082 ~ 20975154 (-)
G11917 NA other downstream 2186781 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2466900 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2995369 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1256155 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1501369 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1621081 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2767858 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 3190632 25473734 ~ 25496958 (-)

Expression


Co-expression Network