brip1


Basic Information

Item Value
gene id brip1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24567591 ~ 24687178 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677939.1
CACACAGCGAGGTAGAGATGGCTGGGAGTACAGTGGAGTACACTATAGGAGGAGTGAAAATCAACTTTCCCTGTAAAGCCTACCCCTCTCAACTCGCCATGATGAATTCAATTGTTCGGGGTCTGAATCACGGGCAGCACTGTCTGTTGGAGAGTCCCACTGGCAGCGGGAAGAGCCTGGCACTGCTGTGTTCAGCCCTGGCGTGGCAGCAGGCACAGTACGGAAAGCTCGGTCAGGATGGATCTTCCTGTGGTGTGAAGAAGCCGGGTGTGATCGCTccgtgtcagtgtgtgtgtcacaGCCGAGCTCCCGCTACACACActtcctccagcagcagcacagccttTAATCCAGCACGGATCGATAATAATCACACTCACACTGATACTCCTCTGAAGGCACAAGAGGACAATCCATCCCAGAGGACGACTCTGTCCTCCAGACTCTCCGAGAAGCTTCAGGCCTCCTGTGCTGCGAATAAAGAAGAAGAGAACGAGGAGGAAGACGGCGATTTCAGGAGCGACAGGAAGCGCATTCGGACTCCTGCTGCGGATCAGAAGCTCAATAGCGCTTTCCTTCCTCAATCCTTTGATGTTCAGCAGAGCAGGAAGAGAAGGTGTCTGGAGAAAGGCGTGGTTTATAtcgatgatgaagatgaagataagGCAGGAAGCTGCAGGGTGGAGCTGAGCAGTCAGGCAGAGCGCTGTtCTCCCGTGTCCTGTACCCTGTGCCCCTGTGCCACTCTGGGAGAAGCTCAGAAGACAGGGGAAAAGACGAAGGATAAAGAGAAGGATAAAGAGAAGGAGGGCAACATGAAGAAAACTGTACCTAAGATCTTTTTTGGAACTCGTACCCATAAACAGATCACTCAGATCGCCCGCGAGCTGAAGAGGACACTGTACTCCACCGTCCCCATGACCATCCTGTCCAGCCGAGACCATACCTGCGTCCACCCTGAGGTGATGCCCCACGCCAACCGCAACGAGCGCTGCAAGGAGCTGCTGGAGGCCAAAAACggTCTCTCTTGCCGGTTCTACCATAATGTGCATAAGATGCGGGAGCAGAGCAGTCTGCAGTGGGTGCACGGGCTGCACCAGGCCTGGGATATAGAGGAGCTGGTACGACTAGGCACTAAGCTGCGCTCCTGCGCGTACTACGCTGCACGGGAGCTCATGCAGGAGGCATGCATCGTCTTCTGTCCTTACAACTATTTACTGGACCCTCTTATTCGGGAGAGTATGGAGATTAATCTGCAGGGGCAGATCGTGGTTCTGGATGAAGCTCATAATATAGAGGACTGTGCCCGCGAGAGTGCCAGCTTCACCCTGAACCAGGCTCAGCTGCTTCAGGCCCGCGAGGAGATCGAGAGCCTGGTCTCCTACAACATCCGCCGCAGCAACCACGAGCCTCTGCTGGCCTTCTGCTGCAGCCTGCTGAAcTGGGTGCAGGAGAGCTCCGGTTCGCTGCGAGAGCGGGATTATGAGAGTGCGTGTAAGGTCTGGACGGGGAGGGAAGTTCTGGAGATTTTTCATGGTTTTGGAATCACAGCTGCCACTTTTCCACTGCTGCAGAAGCACCTGGAGGCGGTTCTGGAGAAAGAGGAAAGGATCGGATTGGTGAACGGGAGAGAGGACACCGTGCAGGTTCCCACCATCGCCTCCAGCACTCAGTCTGTGCTCAAGAGCCTCTTCATGGTGCTGGAGTTCCTGTTCCGACAGAACTGCAGgtttgcAGATGATTATCGTGTGGCCCTGCAGCAGAGTTATATCTGGAGCACTCAGCAGGACGCTCCTGATGCTCAGGGTTTTTTCGCTCGGCCGCAGCGCCGCCGTCAGACTCGCACTAAAACCATGGTGCACACTCTGAGCTTCTGGTGTCTTAACCCTGCTGTGGTGTGGGTTGGTACAGTTGGAATGGGTCCTCAGGGTCGGAGGCTGTGTGCTACGTTTCAGCACACGGAGACGTTTGCGTTTCAGGATGAGGTGGGGGCGCTGCTGCTGAAGGTGTGTCAGACTGTGAGTCGGGGAGTGCTCTGCTTCCTGCCCTCATACAAGctgcTGGATAAGCTGAGGGATCGCTGGATGAACACGGGTCTGTGGGAGAAGCTGGAGGAGTGTAAGGCCGTGATCACAGAGCCAAGAGGAGGAGCCAAGAGCGACTTCGATGAGCTTCTGCAGACTTACTATGAGGCCATACGGCAAAGTGGATCCAGAGatGGAGCTCTGCTGATCGCTGTGTGCAGAGGGAAAGTGAGTGAGGGGCTGGACTTCACTGATGATAACGCGAGAGCAGTGGTCACTGTCGGGATTCCCTTCCCCAACATCAAAGACCTTCAGGTTGAACTGAAGATGAAATATAATGATCAGCATTCCAAATCCAGAGGTCTTCTACCTGGAGGTCGCTGGTATGAGATCCAGGCGTATCGAGCTTTAAACCAGGCTTTAGGAAGGTGCATTCGGCATAAAAACGACTGGGGGGCTCTTATTCTAGTAGATGACCGTTTTAGATCCAACCCCAACAAGTACATCACAGGCCTGTCGAAGTGGGTCCGTCAGCTGGTGAGACATCACGAGAACTTCACCAGCGCCATGCAGTCCCTGCAGTCCTTCTCCCAGAGCCAACAGGGGGCGCTGCAGAGCCACGCCCAGGAGCCCGGACACATCGTCCCCGTGTCTCCTAGTGTCTCCAGGACCGAGACATCAGCTCTGTCCCCTCCTGAATTCCCCGACTTATCTCAACACCTGACCTCTCAGGATCACACGGCCCTGTGTCCCGTCAGCTTCCCATCTGAACCAGcaGGCGCCCAGTCGCTTTTACCTCCACCCTCTGATCCTCCAGTCCTCCAGAGTGAAGAATCCAAAATCAAATCCACATCACGACCTTCATTTAACCTCTTCACCTCCACTCCTGTCAGCACCCGCCTGAAAACACCTCTCTTTAAAACCAGGGACTTTAAAAAGAAGGATGCTGATCAGAGCCCCAGATCTCCAGCATCCTGTAAAAACCTCATCATTCCAGCAGCTGTGGAGGAAGAAGAAGCTCAGACGGGAagtggaggagaaggaggaggaagtgCTGATAAAAACGGACTAAAAGTGATAAGATCTGATCTTCCTCCTCAACAGTTCCTCTTATCTCCGGTAAGATCTGTCCCTGGatgcagcagcatcagcaccaccagcatcatcaccatcagtgctgctgctgctgctgcaggtcctgaagaagatgatgattatggaggaggagaagaagagcaGGACGAGAGGTCCTGCTTCACCCCAGAGCTCTTTGATaatgatgaggaggaggaagatggTGAGATAACTGTAGGAGATGAGAATAAAGCTCCTTCTGAGAGGGGACAGATCTCCTGTCCTTCTAGTTCGGTCACTGAGGGACATTCTGAGGACATGTCCTGCTTGGAGCAGATCAGGAAAAGGATCAGCCTTGAAATTACTGATACTAAGATCAATAATGATGTTTATAAAGCTGACTGTGTTTCTCTGAACAGAGAGTGTGTTATAGATCAGAGTGTAGCAGAGCAGACAGGGACGAGCTGTAGGACAGGACATGAGGACAGGGACAGAGGACAAAGACAGCGCAGTAATAGCAGATCACACAGGCTCTCCAGGTCTAGACAGAAAGCTCCCAGcaaatcagcagcagcttcagGTCAGGGATCAGTTCAGCAGGTCAGTGCAGGAGAAAGGAAGGGATTGAGAGCGTCCCGACGAGGAAAGCAAACCAGGGGTCAAGCGAGTTCTTCACCCTCAACAAACCGAACTCTAATAATCCCTCGTTCAGACTCGACCCGAGACGAACCGGTTCAGATCAGGGACAGGAAGGGGAAAGCAGGAGAATCCTCTGAAGCTCCTGAACCCCGGAGAACCTCCTGCTCTACAGAGCCCTCAGAGCCCTCAGCCTCCTCCCGCCTGCAGTACAGCAAAAACaccgctaacgctaatgctaaagctaaagttcGGTCAGCGAGACGCAGAGCAGGACTCGAGTCCTGCAGCACTGATACGGTTCTGCTGAAGAGCTCAGCTGATCAGGAGCAGGACGCTGTGAGATTTGAGATCATCACTCCGGAGAACAGGAGCAGAGAAGATCCAGAACTAACAGAGGAGGAGAATCAGGGATCAGGAgGGATTAGGATTCAGAGATCCTGTGTGAGGAACAGTAAGAAGATCAGAAAGGTGCAAAAAGGAGTTTGTAGAAGCAGATCTGCTCAGAGACAGAAGCAGTCTTCCTGCCAGACCCCCTGTATGAAAGGACTTCACTGTGCTTCCTGCCAGACTGAGCTCCTGCCCCAAACCCAAGgtgTTGTTCAGAGAGCAGAGTGTGGATCAGCTGAACTGTCCTGTTTACTGCAGATCTGCAGGAGGATAAACGAGACTCAGTGTTCATGCAGCCCCTCAGCATCCACCCAGAACACCAGCACATCACTATTACTGATCCAGAATAGTGACGCTCTACAGACCCTACGCTCCACTCTACAGCCTTACACAGCCCGCACTCTAACAGgTCTGTGTTCATATAACGCAGTGTGGAATCAGGCTCAGTGTTCAGTGATTCAGCTGCTTCAGTGTCGGTTCTGTCTGTCCTGCTGTCCGGATCCAGATCATGCTGCTGTCCTCGCTGCTGATATCCAGAACCCAACAGACCCGTCCCTGGACCAGATCTGGTTGGTTCCCTCAGCGCTTCGATTCTGCTGTAGGATCATCACTGATCAGGGAAGTAAACAGTGAGCTGATTTTCCACATTTGTTTTACCTAAATAAACtattattgtaaataattttctttataaataattagatGAACTGATGAATCAgttgtatgttttatttgatCAGAACTCTGAATGTGTCTGTTCGTGTTGAACAA

Function

NR:

description
Fanconi anemia group J protein isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677939.1 True 4895 mRNA 0.52 24 24567591 24687178

Neighbor

gene id symbol gene type direction distance location
nlrx1 nlrx1 coding downstream 620213 23928815 ~ 23947378 (-)
LOC103036322 LOC108439975 coding downstream 640215 23909411 ~ 23927376 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 672516 23859753 ~ 23895075 (-)
c1qtnf5 c1qtnf5 coding downstream 792275 23767027 ~ 23775316 (-)
LOC103035063 NA coding downstream 842823 23650417 ~ 23724768 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 2897 24690075 ~ 24699460 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 299888 24987066 ~ 25003911 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding upstream 319814 25006992 ~ 25038802 (-)
rnf169 rnf169 coding upstream 375509 25062687 ~ 25072518 (-)
LOC111193727 NA coding upstream 532031 25219209 ~ 25225815 (-)
LOC111193726 NA non-coding downstream 80863 24477718 ~ 24486728 (-)
G13341 NA non-coding downstream 422355 24108652 ~ 24145236 (-)
G13331 NA non-coding downstream 495625 23992719 ~ 24071966 (-)
G13330 NA non-coding downstream 578124 23988935 ~ 23989467 (-)
G13327 NA non-coding downstream 651303 23915713 ~ 23916288 (-)
G13393 ccdc9,LOC107743647 non-coding upstream 20308 24707486 ~ 24712985 (-)
G13419 NA non-coding upstream 88630 24775808 ~ 24809071 (-)
G13427 NA non-coding upstream 281114 24968292 ~ 24968831 (-)
G13444 NA non-coding upstream 304743 24991921 ~ 24993523 (-)
G13476 NA non-coding upstream 356062 25043240 ~ 25043516 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 658820 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 714293 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 1013621 23539257 ~ 23553970 (-)
G12767 NA other downstream 2572840 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 3592437 20975082 ~ 20975154 (-)
spcs2 spcs2,LOC107677086 other upstream 363782 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 786556 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 836609 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1037735 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 1315153 26002331 ~ 26016396 (-)

Expression


Co-expression Network