LOC103046348


Basic Information

Item Value
gene id LOC103046348
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30967269 ~ 30970158 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678009.1
ACCAAGAACTTATCAAATAACAGTAGCGTaacagtattaaaaatgtaacaaaataaagtaatgcAACAACAGAAATATTGCGGAATTGCAGAATTTATTTCACGCATATAAAcagcagacaaacaaacaaaagtaaatacagtgaaTTGCAAAGCAAATACAAACAATATCTgctttctatttatatatttttttgttttgacatTTGACATTTATATGTCAAAAATGGTGCAAATCAACTGAGAGCAGCTGGTAGAGCTAAAATCAATTTAGGATGGTTGGGGTCAGTAACCCCTTCAATGATACGTAACCGAATAAGTGTGTGGCTAAAGTCCAGTCagtttacacacacatttagtcCTGACTCCCGGGGGGAACTGACGCAGACCGGACCTCTCTCTCTGCATATCTCCACTGGTGCTGAAGCTTATCAGGAAAGAAAGAAGATGATTGCATCCAAACTGCCTTTGCTGATGCTGATACTGAGTGGGGTCTCAGGACTGTTGAGGACTCATGCAATCCCAAGGCTTGAAGAAAGAAATGTGGCCCTCGGAGCCGAGGCGGTACAGTCTTCCACCGGTTATGGAGGTTTGGCCAGGTATGCTGTAGATGGCAGCCTGGAAACGAATTACCACCTTAAGAAGTGCACTCACACTGCACAACAGGATAACCCCTGGTGGAGAGTGGACCTGAACAGAACCTACAACATCAGCAGGATTGTCATCACCAACCGAGGGGACTGCTGTGTAGAGCGAATCAGTGGAGCCCAGATCCGTGTCGGCCAGAGCCTGAGGAACAATGGCAACAGCAACAAGAAAGTTGCTGTTATAGAAACTATTCTAAGTGGCCACTCGCAATCATACCAGGTACAGAACGCAGTGGGGAGCTATGTGAACATTTTCCTACCAGGAGTGGAAAAAATTCTGACGTTATGTGAGGTGCAGGTGTTTGTCggtaactatctatctatctcatttCATGCTAATGGTACATTTATCATAATTGTGGAAGTTATAAAAATCAGCCTAACCACACTGTTCCACTGGTTCAACTAG

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678009.1 True 1055 mRNA 0.43 4 30967269 30970158

Neighbor

gene id symbol gene type direction distance location
LOC111193897 LOC108413061 coding downstream 327 30964548 ~ 30966942 (-)
LOC103046043 NA coding downstream 4737 30956193 ~ 30962532 (-)
LOC111193890 NA coding downstream 13153 30946765 ~ 30954116 (-)
LOC103033392 NA coding downstream 21877 30937286 ~ 30945392 (-)
LOC103032739 NA coding downstream 82929 30882104 ~ 30884340 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding upstream 88610 31058768 ~ 31083292 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding upstream 136150 31106308 ~ 31125146 (-)
LOC107197536 LOC107086207 coding upstream 246074 31216232 ~ 31222423 (-)
pdlim7 pdlim7 coding upstream 910636 31880794 ~ 31943297 (-)
higd2a higd2a coding upstream 985448 31955606 ~ 31958456 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 38880 30924840 ~ 30928389 (-)
G14778 NA non-coding downstream 62571 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 199449 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 294800 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 300820 30661819 ~ 30666449 (-)
G14820 NA non-coding upstream 13382 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 78198 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 210828 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 211668 31181826 ~ 31229953 (-)
G14879 NA non-coding upstream 242411 31212569 ~ 31214056 (-)
trnap-agg_1 NA other downstream 43182 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 44020 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 74621 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 241348 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 698919 30261018 ~ 30268350 (-)
G14839 NA other upstream 83606 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1152064 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1843890 32814048 ~ 32820804 (-)
G15497 NA other upstream 3164434 34134592 ~ 34136732 (-)
evc2 NA other upstream 3181665 34151823 ~ 34172017 (-)

Expression


Co-expression Network