LOC107197536 (LOC107086207)


Basic Information

Item Value
gene id LOC107197536
gene name LOC107086207
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31216232 ~ 31222423 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678020.1
ATGCCACCCCTCTTCCAAATCACTAAAACAAGGCCGGTCTCTGATGCTGctactgatgatgatgatgatgatgatgaagagccGGGGCCGGCGGAGAACTCCTGCTATTGGCTGCACCTCCCAGGGGAgggggtggaggtggtgggCGGGGGCACTAAAAAGGCAATCAAGGAACCTGGAGGGAGGCAAGACAGGACCAAGAGGAGGCAAGACAGGATCTCAGGAGGCTTCATCTTCACTGCAGGATCAGGAGCTGAGTTCCTTCAGAGAGTCAGAATCAGATCAGgctgttttctgtattttctcagtgttAAAGTTCAGGCCTGGACATCTGTGGAGTTCACAgatctgctgcttctgctgctgttcttcACACCCTCTGCAGGAATGACTTCCAACACTAAAGTCCTGAGCTGGTCAGATGTGAACATGCCCAAACAGCTGGAggctttctctctgtctgaacATCCCAGAGTGACCTGCGCTGACCTGCGAGGCTGGATCAGCCCTGCTGGACACTCCTATACACCCGCCGGACTGCGCTCAGTGTACACCCACGCCTCGTTGGACGTCACGCTGGATAAATGTGCAGGAAGCCCCGCCCCTACTGTTCCAGAAGAGGAAAACAACAGAGACAAAGAGTCCGGGGccaaacagcaacagcagcagcacctgAGCGCCCCCCAGAGGCACCGGCGGGTGGCGGCGAACGCCCGGGAGAGGCGGCGGATGCACGGTCTGAACCGGGCTTTCGATAAGCTGCGGAGCGTCATTCCGTCTCTGGAGAACGAGAAGAAGCTCTCCAAGTACGACACGCTGCAGATGGCCCAGATCTACATCGCCGAGCTGTCCGAGCTGCTGGAGGGCGTGGTCAGGTCCGAGTGCAGGAGCCCCTATCAAACGGAGCGGATCATAAGGACATGTCCGGTGGAGACGCCCACTCTGGCTCCGGCGTGCCTCGAACGAGACGCCGGCGTCCCTGAGGGACGTCTGCTCATCCTGTCCACACCTACTGTCCACTACAGTCCAGAGAAGAAGAGCGAGGTCATCACACTGTCCAGCGCCAGCGACGGAGAGTCGTCCCACTTCAGCGACGCCGAGGACGGACAGTCCAGGGGGTGCTGACCCGCTGCATAGTGGTGCATAGTGGTGCATACGTGCGAAAAGAGGCACTCTTATGATGATGTCATCTGATCTGTCTGTGTTTTAGTAGACGTTAAGAGGGACCAAATAGTGCGGGTAGATGTTTAGTAGACTATTGAGAATTATTACCTgagaaaaatggacaaaaaactaagaaaaagaaaagaaaagaaaagacgaACAACCTGCAACGGCACACAGAATGTTAACCATGGCTGCGTCCCAATTGCATACAATACActta

Function

NR:

description
PREDICTED: protein atonal homolog 1-like

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0042668 auditory receptor cell fate determination biological_process

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678020.1 True 1387 mRNA 0.55 3 31216232 31222423

Neighbor

gene id symbol gene type direction distance location
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding downstream 91086 31106308 ~ 31125146 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding downstream 132940 31058768 ~ 31083292 (-)
LOC103046348 NA coding downstream 246074 30967269 ~ 30970158 (-)
LOC111193897 LOC108413061 coding downstream 249290 30964548 ~ 30966942 (-)
LOC103046043 NA coding downstream 253700 30956193 ~ 30962532 (-)
pdlim7 pdlim7 coding upstream 658371 31880794 ~ 31943297 (-)
higd2a higd2a coding upstream 733183 31955606 ~ 31958456 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding upstream 751169 31973592 ~ 31995512 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding upstream 823686 32046109 ~ 32055172 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding upstream 851743 32074166 ~ 32119158 (-)
G14879 NA non-coding downstream 2176 31212569 ~ 31214056 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding downstream 22439 31180986 ~ 31193793 (-)
G14834 NA non-coding downstream 167625 31048356 ~ 31048607 (-)
G14820 NA non-coding downstream 232201 30983540 ~ 30984031 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 287843 30924840 ~ 30928389 (-)
G14882 NA non-coding upstream 33562 31255985 ~ 31256204 (-)
G14883 NA non-coding upstream 38345 31260768 ~ 31260986 (-)
G14885 NA non-coding upstream 45237 31267660 ~ 31268093 (-)
G15023 NA non-coding upstream 306914 31529337 ~ 31621297 (-)
G15037 NA non-coding upstream 622759 31845182 ~ 31876961 (-)
G14839 NA other downstream 160729 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 292145 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 292983 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 323584 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 490311 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 899799 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1591625 32814048 ~ 32820804 (-)
G15497 NA other upstream 2912169 34134592 ~ 34136732 (-)
evc2 NA other upstream 2929400 34151823 ~ 34172017 (-)
G15498 NA other upstream 3018903 34241326 ~ 34242318 (-)

Expression


Co-expression Network