LOC111193166


Basic Information

Item Value
gene id LOC111193166
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 5332883 ~ 5333994 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650295.1
GGCCCTTTTCACAGAGCTTGATGACGTGTTTCCGGTTTGGTTTAGCAGGGTAAACACAGCGGCGCTAGAATGGAGTTCACTGCTGTCTCTGCACAAACTTCTATTGATTTCTTTCTCCGACATCTCACTGATTATAGATGAGGTATCAGTAGCGAAAATATCGAAGGTTGAAAAGGATTACAAGCTTTTTGTCGAGGAATACATCTTTAATTTTGAGGGTGACTTCATACCACCCAGATCCTGTGGAGGTAATAAAGACATCGTGCAAGTGTTGCGGGGAAGGCCTTTTCCAATCATACTATTGCTCTGCTTTATCAGATTGCCCATTAAAGCACCATGGGCTTTAAAACAGTCTCTCTCCCAGCAGCATGTTCTGTtatagtttgttttttgtggaaatatGGAATTTTCTAAATAAACTTGTATTCTTTGCTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650295.1 True 438 lncRNA 0.41 2 5332883 5333994

Neighbor

gene id symbol gene type direction distance location
LOC103033010 sta5b,stat5,LOC108444239,LOC106607295,LOC108279147 coding upstream 250156 4919473 ~ 5082727 (+)
stat3 stat3,LOC107653351,LOC107731003,LOC107754129 coding upstream 424722 4854378 ~ 4908161 (+)
cavin1 NA coding upstream 495868 4806334 ~ 4837015 (+)
LOC103021349 LOC103021349,LOC108444243 coding upstream 600559 4705449 ~ 4732324 (+)
LOC103021882 LOC108412577 coding upstream 686757 4639227 ~ 4646126 (+)
kcnh4 kcnh4,LOC107568301 coding downstream 8639 5342633 ~ 5408162 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding downstream 88184 5422178 ~ 5450200 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding downstream 118258 5452252 ~ 5467730 (+)
dhx58 NA coding downstream 140820 5474814 ~ 5500346 (+)
znf385c znf385c,LOC107590592 coding downstream 205947 5539941 ~ 5686852 (+)
G8157 NA non-coding upstream 180376 5146370 ~ 5152507 (+)
G8155 NA non-coding upstream 189528 5143000 ~ 5143355 (+)
G8141 NA non-coding upstream 207715 5118048 ~ 5125168 (+)
G8133 NA non-coding upstream 224090 5089628 ~ 5108793 (+)
G8134 NA non-coding upstream 231624 5093961 ~ 5101259 (+)
G8181 NA non-coding downstream 77846 5411840 ~ 5412408 (+)
G8250 NA non-coding downstream 267628 5601622 ~ 5642847 (+)
G8263 nkiras2,kbrs2,LOC106607286 non-coding downstream 369371 5703365 ~ 5705039 (+)
G8291 NA non-coding downstream 571426 5905420 ~ 5905619 (+)
G8292 NA non-coding downstream 576276 5910270 ~ 5910650 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 4016 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 530382 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 1403641 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 1880217 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 2490669 2825128 ~ 2842214 (+)
G8287 ttc25,LOC106601019 other downstream 394928 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 1023408 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 1375091 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 3104792 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 3130122 8464116 ~ 8485936 (+)

Expression


Co-expression Network